| mature miRNA: ACCGGTCTGACCGGCTGATGG species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|218479018|gb|FG964768.1|FG964768 MA_LYP9_03552 Mature embryo cDNA Library of LYP9 Oryza sativa Indica Group cDNA 5', mRNA seq ACCGGTCTGACCGGCTGATGG EST sequence (targeted fragment marked with yellow): ACGCGGTGGCGGCGCCTAAACTAGTGGATCCCCCGGGCTGCAGATGGATTACAGGTAGTCGCAGTTATCATTTTATGTGGACCGGTCAGACCGGGCTCTGGTAGCCGGTCAGACCGGCGTGTATCGCACGGTCAGACCGGCGCACCCGCGGTCTGACCGCGCCAACATTGTGTCGGTTTCGGTTTCGGGTTGTTTATTTGGATATCCGAGTTTATTCCATGATTATGACTTCTAGATGGATACTATACGTATGTAATACTATTGTTTGCTGCTAATGAGTCAAGTTGGAGATAGCTTGGTCTCGGAATATGGTTTCTTTGTTTGTTCCATGTATAGGTGACTCGATGTCTCGGGAGAGTATTTGTGGTGATGGACCGGGAGTCGGCTTGGAGATAAGACGACGTCCGTGGTGGTCAAAGATCATGCGGGATTCTTAGGCAAGAGTTGATGCACGTGGTTGATGGAGATTCCATATGGCATACGATGGAGTTATTGTGTGCGTATGGGATGCGGAGTCGAATTTGGAAGGAGTCCAA | |||||||||
gi|87032318|gb|CI264099.1|CI264099 CI264099 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat ACCGGTCTGACCGGCTGATGG EST sequence (targeted fragment marked with yellow): ATAAAGTCGTCATCCACTTTAAGAGTTCTTCGATTTGTGTTTCACCGGGTTTCGGCGGTCTAACCGGCGGCGCACCGGCGGTCAGACCGGCGGCATCGCGACGGTCCAACCGGCGGGCACACGGCGGTCAGACCGGTGGCGACAGGAGTCGACGACAGGCGTTCTCGACGGTTCGACCGATCGATCTACTTCGGTCAGACCGACGTTCATCAGCGGTCAGACCGGCGCAACTACTTCGGTCAGACCGCGATCCATCGATTTTGAGGGTAACTTTTATTTCCGCTAAAAGTTTTCGGTTTTTGGGTATACTAACCATTCACCCCCCTCTGGTTGGCTTAGTTCTTGTGATTTGATTCTACAGGATGATCCATTGTAATACGATGAAGCCGTTGATTGGCCGTTGTTTTCTTTGTAGGAGTTGCCGTGGTTTGTTGTTCCATGTTGTTTCGGCTTGGAGTTCGAATGCCCTTTTGAGTAGTAGTACGTCCATTTTGATCTTCTCAGGTGTTGTGCAACCGTTTCCTTCTGATCGAGATGCTTGAAAATGCTTGATCGAAGGGGGTTATCCA | |||||||||
gi|88221106|gb|CI221062.1|CI221062 CI221062 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft ACCGGTCTGACCGGCTGATGG EST sequence (targeted fragment marked with yellow): TTATATAAAAGAAAAGAAAAAGAGTTTGCAGGCAGTAAAGTACATCGGGTACAAAAAGGGAAGAATCACACCATTCTATGCTTCAAGATCCCCCCGAACCCATTTCTTGACGCATCTATCTTTTGCACTTCCCACATCCTCTGCTTCCCCATCACCCGGTCATACCGGGCAGGGTATCATCCCCATCCCCAGTATAGCTACAGGTGTTAGATAATTCGCTAGGGGCGAGTTATCTATTTGAACTTCTTGCCGAAGAGGATCAGCTGGACCTGATCGTAGATGGACAGGACACCAGCACCGGCAACACCACGGAGGATGTAGGCACCGGCACCCTTGAACAGGGACTTGGTACCCTCCTTGGCGATGATCTGGCGGGCAGCATCCATGGAGGAGGAGTACTTGACGGCCTCACCGGAGGTCATCATCATACGACGACGGATAGTGTCCAGAGGGTAGGAAGCAACACCAGCAGCA | |||||||||
gi|88372882|gb|CI640333.1|CI640333 CI640333 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro ACCGGTCTGACCGGCTGATGG EST sequence (targeted fragment marked with yellow): GGACGGTCTCCCANTTTCCGCCTCTTCCCCACCACCATCGTTCTCCTTCTCTTCTCCCTCTCCCACCTTTCTCCCCCCGGGCGCCCGATCCTTCCCTTCCCCCAANTCCCTCTCGCATTTCCCAGCTCGGATCCTCTTCTGACTTCTCTCTCTCTCTCCGTCTGTCTCTCTCCTCTTTCGAGGTCTTCAGTCTTCAGTGTTCTTGACGACCTTGCTGCTTCTTGCCTCTGTTTCGCCTCCTACTTGCCGTCTTCTTCTTCTTCTTGCTGCTGCTGCTGCTGCTGCTGAATTTCTCTTCGGTCAGTCACTCGGTCAGGCCGGTGCCGGTCTGGGAGCGATNTCCGCGGACGCACGCATCAANAGTGGAGGGAGGGGAGGGGAGGAGCT | |||||||||
gi|117232356|gb|CT860074.1|CT860074 CT860074 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD ACCGGTCTGACCGGCTGATGG EST sequence (targeted fragment marked with yellow): GTCCGGTCAGCGCTGGCGTCACCCTCCACTCCCTCTCCTTCCGCCCTTGCCTCCTCCTCCGCCTAATGCGATCCGACGCACGCCACCACCACCTCCTCCTCCGATCCCGCATGCGCCCGGTCCACCGCGCCTCGCCTCGCTGACCCACGGGGGCCACCTGCTGCTGGTGGTGGTGGACGGACGGAGTTGTCCGCGACGGTCTCCCACTTTCCGCCTCTTCCCCACCACCATCGTTCTCCTTCTCTTCTCCCTCTCCCACCTTTCTCCCCCCGCGCGCCCGATCCTTCCCTTCCCCCAACTCCCTCTCGCATTTCCCAGCTCGGATCCTCTTCTGACTTCTCTCTCTCTCTCCGTCTGTCTCTCTCCTCTTTCGAGGTCTTCAGTCTTCAGTGTTCTTGACGACCTTGCTGCTTCTTGCCTCTGTTTCGCCTCCTACTTGCCGTCTTCTTCTTCTTCTTGCTGCTGCTGCTGCTGCTGAATTTTTCTTCGGTCAGTTAGTCGGTCAGGCCGGTGCCGGTCTGGGAGCGATTCCGCCGGACGCACGCATCAACAGTGGAGGGAGGGGAGGGGAGGAGCTTCCCCTTTTTGATCTAGCAAGTCGTCGTCTCCAAAAATACACTTTTTTTTGTTGGGTCTTTGGAACAAAAGGGTCTCCTCCTTTTGATCTTTCTGTCTCATCACTAAATTAGCAAAGCTTTGTGCTTCGCGGCGATCTCTTTTCAGCTAATTCAGTCTCTGTTGATAGCTTCGTTGCCCAAGAGAGATCCCCCATGTCAGAGGCGAGCGGATGACACCGCAATTCGGGTCCGGTTCTTCCGCCTGAGCTGCAGAATTTTAAGCTTCCTCCGTGGTGCCGCCATGGATGCCCTTCCTGACGCCGCCGACGCGGCGCCGTTGGCGGCGGCGGCGGCGCCGCCGCAGAACCGCGACGAGTGGAGTGAGAGCGGCA | |||||||||
gi|58586031|gb|CF984339.1|CF984339 23154rsicee_13724.y1 Oryza sativa cv. LYP9 tillering whole plant cDNA library Oryza sativa In ACCGGTCTGACCGGCTGATGG EST sequence (targeted fragment marked with yellow): GCACGAGGGCATTCCAGCTCGGATCCTCTTCTGACTTCTCTCTCTCTCTCCGTCTGTCTCTCTCCTGCGGCGAGGTCTTCAGTCTTCAGTGTTCTTGACGACCTTGCTGCTTCTTGCCTCTGTTTCGCCTCCTACTTGCCGTCTTCTTCTTCTTCTTGCTGCTGAATTTTTCTTCGGTCAGTTAGTCGGTCAGGCCGGTGCCGGTCTGGGAGCGAGTCCGCCGGACGCACGCATCAACAGTGGAGGGAGGGGAGGGGAGGAGCTTCCCCTTTTTGATCTAGCAAGTCGTCGTCTCCAAAAATACACTTTTTTTTGTTGGGTCTTTGGAACAAAAGGGTCTCCTCCTTTTGATCTTTCTGTCTCATCACTAAATTAGCAAAGCTTTGTGCTTCGCGGCGATCTCTTTTCAGCTAATTCAGTCTCTGTTGATAGCTTCGTTGCCCAAGAGAGATCCCCCATGTCAGAGGCGAGCGGATGACACCGCAATTCGGGTCCGGTTCTTCCGCCTGAGCTGCAGAATTTTAAGCTTCCTCCGTG | |||||||||
gi|58695108|gb|CK083795.1|CK083795 79910rsicen_4141.y1 Oryza sativa cv. LYP9 booting whole plant cDNA library Oryza sativa Indic ACCGGTCTGACCGGCTGATGG EST sequence (targeted fragment marked with yellow): TGGATCCCCCGGGCTGCAGGCTCTTTCGAGGTCTTCAGTCTTCAGTGTTCTTGACGACCTTGCTGCTTCTTGCCTCTGTTTCGCCTCCTACTTGCCGTCTTCTTCTTCTTCTTGCTGCTGAATTTTTCTTCGGTCAGTTAGTCGGTCAGGCCGGTGCCGGTCTGGGAGCGATTCCGCCGGACGCACGCATCAACAGTGGAGGGAGGGGAGGGGAGGAGCTTCCCCTTTTTGATCTAGCAAGTCGTCGTCTCCAAAAATACACTTTTTTTTGTTGGGTCTTTGGAACAAAAGGGTCTCCTCCTTTTGATCTTTCTGTCTCATCACTAAATTAGCAAAGCTTTGTGCTTCGCGGCGATCTCTTTTCAGCTAATTCAGTCTCTGTTGATAGCTTCGTTGCCCAAGAGAGATCCCCCATGTCAGAGGCGAGCGGATGACACCGCAATTCGGGTCCGGTTCTTCCGCCTGAGCTGCAGAATTTTAAGCTTCCTCCGTGGTGCCGCCATGGACGCCCTTCCTGACGCCGCCGACGCGGCGCCGTTGGCGGCGGCGGCGCCGCCGCCGCAGAAGCGCGACGAGTGGAGCGAGAGCGGCATTGTGCGGCTGCTGGAGGCGTACGAGGCCAAGTGGCTGCTGCGGAAC | |||||||||
gi|58677866|gb|CK066553.1|CK066553 75130rsicem_14530.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G ACCGGTCTGACCGGCTGATGG EST sequence (targeted fragment marked with yellow): TACGATGGAGGTTTCGGCGGTCTAACCGGCGGCTCACCGGCGGTCAGACCGGTGGCATCGCGGCGGTCAGACCGGCGGCGACAGGAGTCGGCAGCAGATCATCTCGGCGGTTCAACCGGAGTTCGATCGCTGTCAGATCAACGTTCATTAGGCGGTCAGACCGGCGCATTCACTTCGGTCAGACCGCGATCCATCGAATTCGAGGTTTACTTTTTTTTCCGCTAAAAGTTTTCAGTTTTTGGGTATACCAACCATTCACCCCCCCTGGTTGGCTTAGTTCTTGTGATTCGATCCTACATATGGTACTGAATTAATTAAGTCACCATTCTGGGTACTACCCAGCAGAGTTTCCCGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAACTCAAGGGGGGGCCCGGTACCC | |||||||||
gi|88309266|gb|CI655274.1|CI655274 CI655274 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro ACCGGTCTGACCGGCTGATGG EST sequence (targeted fragment marked with yellow): AACTCCCTCTCGCATTTCCCAGCTCGGATCCTCTTCTGACTTCTCTCTCTCTCTCCGTCTGTCTCTCTCCTCTTTCGAGGTCTTCAGTCTTCAGTGTTCTTGACGACCTTGCTGCTTCTTGCCTCTGTTTCGCCTCCTACTTGCCGTCTTCTTCTTCTTCTTGCTGCTGCTGCTGCTGCTGCTGAATTTTTCTTCGGTCAGTTAGTCGGTCAGGCCGGTGCCGGTCTGGGACCGATTCCGCCGGACGCACGCATCAACAGTGGAGGGAGGGGAGGGGAGGAGCTTCCCCTTCTCGATCTACCCAGTCGCCGTCTCCAAAAATACACCTTCTTTTGTTGGGTCTTTGGAACAAAAGGGTCTCCCTCTTTCGATCTCTCTGTCTCATCACTA | |||||||||
gi|218500557|gb|FG970530.1|FG970530 MA_LYP9_09314 Mature embryo cDNA Library of LYP9 Oryza sativa Indica Group cDNA 5', mRNA seq ACCGGTCTGACCGGCTGATGG EST sequence (targeted fragment marked with yellow): TGTAACGGATTGCTAATAGCGCTGTACTATCAAGAGGGGTCTATGAAGCGAGCTTGTGGATGATCTTGTGCCATATTAGTTCATATGCATGTAGGTGCATTTTGTGGGCTTGTCTAACCAAGTGTGATGAGTTTTCTCAAGTCCTAAACCAGGAGAGAAGTGGGCATGTCCAATAGGAGTGAGTGACATCTTGTGGGTATGTCCGGTGGATATCCTTTGGAGTGTGAGCCCTTTATCCTTGACTTAAGTTGTGTTTCTTGGATGGATTTTTCATGGGTTGGATGGCCCTTTGAATAAGCTTTCCATAGAGTCCAAGAACACCAAATTCTGAGACCCGAGTCAAGAGATATCGCCATTTTACTAACGGTCGGTTGAGCTGAAAAGTGACCTGCAGTCTGACCGTGGGCCTTAGGCCGGTCTGACCGGGTCTGTTAGCCGGTCTGACCGGCGTGGTAAGACCGGTCTGACCGGCCCCACTGGTTTGTTGTACTGGTTTGGTTTTTGGTGGCGATACAGAGCCGCCAGAGCCGCAACCAGTCAGACCGAGCCGACGGCGGTCTGACCGAGCCGTGGACGGTCTGACCGGCCACTACACTGCGGTCAGACCGGCCAGGTTGAGTGGGCTCAATGATTGCCCTGTTCTAGCCGTTACAAAGTAATCCGTTCTGACCGGCC | |||||||||