| mature miRNA: ACCGTTAGATCGAGAAATAAA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|117226747|gb|CT853359.1|CT853359 CT853359 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD ACCGTTAGATCGAGAAATAAA EST sequence (targeted fragment marked with yellow): GCGTGTTTAATCACAAGGACTAGTCAATTAAGGAAGGGATAAGATAATAAGACCAGCTACTAATAATTAAGAGGATTTTTTTTTGTTGTCTGCATAGCATTAGCCTGCAAATGATTGGAGGGAATGAAGAACAAATCACACACACAACCAAAAACTAAATAGATAGTGGTGACGTCGTAGTCTATGAAAAGATGAGAAAATTTCTAGGAGGAAATCGACAGGATATGCATCTCCCCTGCCTTTTTTGCATTATATATGCTCGTGTGTTTAATCACAAGGGTAAGATCATAGGACGAACCGCTAATAATAATTAAGAGGATTTTAATGTACTCTTCTTTCTTTCTTTCTCTTGATGCATAGTAGCCTGCTTGTGATTGGATTGGAGGGAATTAGTGAACTAAGTCAAACACAACCAATTGCTAGTCGTGTGTTGAGAAATATTGGAAAATAGGCAAAGAAAAAAAAAGAAAAATAAACAATTGGTTGTGTCTGAGGGGAATTTGAGGGAATTAATGTTGCATTTCTATTTAGAGACTTCTCAATACTACTTCTTCTGTTCATGTATTGTAGACGTTCTATGATTTGAATTCACATATCTATTTCATATAGGAAAAATATGTTGTGCAAACCACATATGTAGTGGAAACTTAATTAGAACTCATAGTGACGTGGACGAATCTCGGACCGTCATTTCTCGATCCAACGGTAGTTTTTAAGTTCCCACTACATATATGGTTTGCATTACATATTTATATGTGTCCCAAATTCAGGATTTGGGAACCATCCGGATCATTTTCAAGATAAAAATCACATTTACATTTCCAAAGTAGGGAACAAGGAACACAATTTGGCTCATACCTCCCTATACAAGCGGGGAATGGGGGATGGCATCGGTAAATAAGGGCGATGGCATGGAGCAATGGGATTCAAACCAAATACCCGGTAATTTAAAGCTTTATTCATGGAAATGTGAGGCCCCCCCCACAAAAAAAACCGGCTGGCCCCGCAACACCCCAAACAAAACACCCAAAAAATTGAAAAATTTAAAACCCCCACCCATGGAATGGGGGGGGGGGTTTTTTTTGTCCCCCACCCCACCCCCTTTTTTGGCCCCCCCCTTTAC | |||||||||
gi|88234617|gb|CI234466.1|CI234466 CI234466 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft ACCGTTAGATCGAGAAATAAA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTGATCCAACGGTTCATAATTTGCAAGATTTAGGGAGGTTTTTTCTGTCAAAAGACCCCTAGAAAGTCCCATATATTAATCCGAATAGTAATTTGGGAATGCAGAGGCAGCTACATGCCTACATGGTGATATAATCCCAGTAGTTGTTGTTGGTGGAGCCAAGGATCCTCCCGCCGACGTCGGGGAAGAACTCGTGCCCGCGCAACTCGCTGATCTTGCCGTCGTCGCCGACGTCCACCGGGTACCTCATGAGGTGCCCCTGCATGGCGACATCGTCGTCGTCGGCGGCGTACCTCCTCCAGTTCTCCGCCGCTATCTCGTTCACCCGCTTCACGCACTCCGGCGACTCCGGCGACCTCAGCTCCCGCCACTCGCTGCTGCCCAGGTGCTCCTCCCACAGCAACATCCTGAAGCCGAACACCTGGCCGTCGCCGGCGCCGGCGCCGGCGCGGAGATTGGGCTGGTAGGCGCCGACGGAGATCTCGGTGTCGCGCGAGCCGGCGAGAGAGCGCTGGTTGATGTTGGCGGAGCCGACGAT | |||||||||
gi|88721731|gb|CI745030.1|CI745030 CI745030 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro ACCGTTAGATCGAGAAATAAA EST sequence (targeted fragment marked with yellow): TTAGGTTTGATTGGATGGGAAAATATGTAGTGGAAACCACATATGTAGTGGAAACTTGAAAACTACCGTNGGATCGGGAAATGTACATCCGAGATTCATCCACGTTACCATGAGTTAAAATTTAACTCCCAGTAAAATTTTAACTCATGAGTGAATCTGCGAGTTAAATTTTAACTCATGGTGACGTGGACGGATCTCGGGCGTCCATTTCACGATCTAACGGTAGTTTCCAAGTTTCTACTACATATGTGGTTTGTGTTGAGAATATAGGCATATAATGATCTAATATATGCCATAAATAAATCATGACATTACAGATGTATACTAGCATCAACGCATCATTAGATCTACACATGTAAACTAAGCAGTANAC | |||||||||
gi|88693758|gb|CI735335.1|CI735335 CI735335 Oryza sativa (japonica cultivar-group) 1 nuclei stage anther Oryza sativa Japonica G ACCGTTAGATCGAGAAATAAA EST sequence (targeted fragment marked with yellow): TGGTGAAGTGCCTCGTCAACAGCCTCTTCCAGTGGGGCGGATGCTACCAGCGCTGCAGGTCCGACAACTGCAACGACTGGTGCACCAGAGGCTAACGTAACCTAGCTGATGAACGGATCCATCCTTCGGATCGGACGGCTTGCGTTCGTTTAGCCCTCGATCTGACGGTTACAGCTGCAGTACTAATTTTTTTGGACAAAGATGATGGTATATACCAGCTTGTTTTTTTTTTCAAAAGATAGAAAATGGTATTACTTATGTGCTCAGGATAGATCCAGCATGGGTGTGCCAGAGGGACTTGAGTCCTCCGTGCCCACTAGATCATCATTGATAAAAGGAGAGAGAGTCGAAAGAAAAAGAGAGAT | |||||||||
gi|58680000|gb|CK068687.1|CK068687 75396rsicem_21215.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G ACCGTTAGATCGAGAAATAAA EST sequence (targeted fragment marked with yellow): CGGCACGAGGGAGAGAGAGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTGGTTTTTTTTTTTCGAGCTAACGGCATATGCTTAACTCCAGAATG | |||||||||
gi|86500210|gb|CI142843.1|CI142843 CI142843 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa ACCGTTAGATCGAGAAATAAA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTCGAGCTAACGGCATATGCTTAACTCCAGAATTGTTGATATGATTACAGAACATATCGCAATAACGCGATCGATCAGAGATTCAGAGACATGACGAAGACACAGCAAATATCAGCTACACCATTTTTTTTGTTACATTTTCGAGGGACATCAGCTACACCTTGATGACACCAAACCGAAACATCATCAGAGCAGTAGAGATCCTAAGTGCCCAGCTTTGTGGTAGCACCTCGTACAATGCCCTGCCAACCTTGTCACACACTCTGTGGACATAATAAACTTCCAGTGAACACACTTGCTCCAGTGTAGATACTAATCTGAATTATATCCGAGGAAGTGTCAGTTACTGGATCATAAATCTGCACAACCCCTTTTGATCCCATCTGCATCGAGAGTACTATCTTTCCCTCATCCGTCACAAGCAAAGGTTGCACTTTCAGATAATCTCCAATCCCATGAAAAACAGCATCAACATTAATCCTATGATCTTTGGACCATGTACCCTTTTCAGAATCAGTTAGAAACCATAGATCCACGGTATAAAATTGATCATTCCAGTGCGATGTACACAAAGTGCCTTTAAGTCCAGATAACATAAGCTGATTGGCAAGGTCATGATAGCTGAGCGTGCCATTGGATTC | |||||||||
gi|117246867|gb|CT843708.1|CT843708 CT843708 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD ACCGTTAGATCGAGAAATAAA EST sequence (targeted fragment marked with yellow): CGCTGCCGCCCCCTCCGCTGCGTCGTCCTAGGCTCCTAGCTATGTAGCCTTCGTGTCAACGTGCTTGCGTGTCATTGTGTGTAACCGTGCAAGGAGAGGCGTTTGGTGTGCGCCGTTTTGGGGAAAATATGGGGGTGGAAACCACGTACACGATGGAAACTTGAAAACTACCGTTAGATTAAATAATAGACGCTTGAGATTTGTTCACGTCATCACGAGTAAAAATTTTACTCACAGATTTACTCGTGAGTAAAAATTTTACTGTGCGTGATAACGTGGATGATTCTCGAACATTTATTTCTCGATCTAACGGTAGTTTCCACAACATATATGGTCCACTGTATATTTTCTTCCGTTTTGGCGTGTGCGCCATCGATGGAGCAATAACAGTGGACCGTCATGGGTCGTGGGCCTGTGATAGGTTATGTGGGCCACCTCGAATTGGGCCCTTCTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAATAAAAAAAATATGGAAAATTTAAAAAAAAA | |||||||||