| mature miRNA: ACCTTGGAAGGTTCATTATAT species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73861089|gb|DT463828.1|DT463828 GH_CHX14E04.r GH_CHX Gossypium hirsutum cDNA clone GH_CHX14E04 3', mRNA sequence ACCTTGGAAGGTTCATTATAT EST sequence (targeted fragment marked with yellow): GATTTGGTCCAAATAATGAACCTTCCAAGGTGACCACCAGGTGCCAGTTTCAACAGATTAAGCCTCTCCACGTTGGCAACCTCCACTCCAGGAATGTTACGGAAGGCTTTAACAAGCTTAGCTCCCTCAGTTCCGTAAACAATCAAAGGACCTTTACGGGAAATGTACCTCCGATTCCTCATTTTTCCTTTTCCGGGTCGGATTCCTTGGCTGTCCTTAGCCTTTTCAACATCAGGATATGCTCCGATCTGTTTCAAAACCTTGATTGCACCCGAGGTTTTCTCAACGCTCTCAACAGCGTCAGAAATGACCAGCGGCATCTCCGGTACAGCCTCAATGCGGTGGCCACGTGCCATGACGAGGGAAGGAACAGCGGAGGCGGCGATGGCAGAAGCAACGGCGTAACGCTTCTGGTTAACGTTGATTTTCCGGTGCCAGCGGCGCCAGATCTTGGTAGGAGCAAACATGCGTCCACCGCGACACATGTTTCCGAAAGCACCTTGGCCTGCACGGTGAGTACCCCCACCAGGAACACGAGGGATACGTGAGACGGCACGACCGGTACCCCAGGATTCAGCTGAAGTTTGGTGACCAGCGCGTTTGGAGACGGCATAGGGTTGACGGCTGTTTTTGGATATATTGTCGTGAACGAAGGTGACGATGTCGGGTCGAATCGAGGCTTTCATCACATCAGCGAGAGGAACGGTTGGAGTGGCATCAGTAGCCATGTCGGACTCTATGGTTTGGACGGAGACAAGAGGGCGCGCGGCGGCGGCCATTTTGTAGGGTTTGGGTGAGGAGGGGGAGTGAAGGTCGACGCGGCCGC | |||||||||
gi|109854561|gb|DW483540.1|DW483540 GH_RMIRS_042_D08_F Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq ACCTTGGAAGGTTCATTATAT EST sequence (targeted fragment marked with yellow): AAAGATAGGGTTTCCACCATTGTTGTAAGGCACACCAAGGAAGAAAGAGATAAAATATGGCACCCATTTCATTACCTAACAAGCCCCATGCAGTATGCATCCCCTTCCCGGCACAAGGTCACGTAAACCCGATGCTCAAAGTGGCCAAACTCCTCCATTTCAAAGGCTTCCGCATCACTTTCGTCAACACCGAGTACAACCACAAACGCTTGCTCAAATCCAGGGGCCCCCACGCCCTCGACGGCTTGCCTGACTTCCGGTTCGAGACAATCCCCGACGGCCTTCCTCCGCCCGACATCGACGCCACGCAAGACATCCCCGCGCTTTGTGACTCCACTAGCAAGCATTGTTTGGCTCCCTTTCGCCGACTCCCTGTTGAGCTAAATGTTAATTCCCGTGTCCCTCCGGTCACTTGTATCGTCGCTGATGGGAGCATGTCGTTCACTCTCGAGGCGGCTAAAGAGTTAGGGATTCCCAGTGTGTTGCTTTGGACACCCAGTGCTTGTGGTTTCTTGGCTTATTGCCATTTCCGACGGCTTATTGATGAGGGTTTTACACCATTGAAAGATGAATCCTATTTGACAAACGGGTATTTGGATACCGTCATTGACTGGATCCCGGGCATGAAACACATCCGTATAAGGGACCTTCCAAGCTTTGTTCGAACAACGAATCCAGACGATATAATGTTGAATTTCTTTGCGACGGAGTGCGACAGAGCTTCCAAAGCTTCCGCCATTATCGTAAACACCTTCGATGAATTGGAACATGATGTCATCAAAGCCCTCTCCTCTATCTTCCCTAAATTTTACACTATTGGACCCCTTCACTTGCTCCTCAACCACATCCCCACTTGTCTCGTCCTCTGCCTGATGTAAA | |||||||||
gi|109854220|gb|DW483199.1|DW483199 GH_RMIRS_040_E09_071_F Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA ACCTTGGAAGGTTCATTATAT EST sequence (targeted fragment marked with yellow): ACACCAAGGAAGAAAGAGATAAAATATGGCACCCATTTCATTACCTAACAAGCCCCATGCAGTATGCATCCCCTTCCCGGCACAAGGTCACGTAAACCCGATGCTCAAAGTGGCCAAACTCCTCCATTTCAAAGGCTTCCGCATCACTTTCGTCAACACCGAGTACAACCACAAACGCTTGCTCAAATCCAGGGGCCCCCACGCCCTCGACGGCTTGCCTGACTTCCGGTTCGAGACAATCCCCGACGGCCTTCCTCCGCCCGACATCGACGCCACGCAAGACATCCCCGCGCTTTGTGACTCCACTAGCAAGCATTGTTTGGCTCCCTTTCGCCGACTCCTTGTTGAGCTAAATGTTAATTCCCGTGTCCCTCCGGTCACTTGTATCGTCGCTGATGGGAGCATGTCGTTCACTCTCGAGGCGGCTAAAGAGTTAGGGATTCCCAGTGTGTTGCTTTGGACACCCAGTGCTTGTGGTTTCTTGGCTTATTGCCATTTCCGACGGCTTATTGATGAGGGTTTTACACCATTGAAAGATGAATCCTATTTGACAAACGGGTATTTGGATACCGTCATTGACTGGATCCCGGGCATGAAAAACATCCGTATAAGGGACCTTCCAAGCTTTGTTCGAACAACGAATCCAGACGATATAATGTTGAATTTCTTTGCGACGGAGCGCGACAGAGCTTCCAAAGCTTCCGCCATTATCGTAAACACCTTCGATGAATTGGAACATGATGTCATCAAGGCTCTCTCCTCTATCTTCCCTAAATTTTACACTATTGGACCCCTTCACTTGCTCCTCAACCACATCCCACCCTTGTCTCGTCCTCTGCCTGAT | |||||||||
gi|164248044|gb|ES802754.1|ES802754 UFL_529_09 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence ACCTTGGAAGGTTCATTATAT EST sequence (targeted fragment marked with yellow): AGGCTCGACACTAGTTAGGATCCANAAGAATTGCGGCACGAAGGATTTATATACACTTCGTTCCAAGAAAGGGCAACTTTTATCTCCCATGGGAATACAGGCAGGCTCGCCAAGGAGTATGGGGATATTAAATTGGCTCAAATTTGCGGTAGCATTGCCTCAGATGAGAAGCGCCACGAGACAGCCTATACCAAAATCGTTGAAAAGCTGTTTGAGATTGATCCTGATGAAACAGTTCGGGCATTTGCTGACATGATGAGGAAGAAAATCACCATGCCAGCTGAGTTCATCTATGATGGCCGAGATTACAACCTATTTGACCACTACTCAGCTGTCGCCCAAAGGATCGGGGTTTACACTGCCAAGGACTATGTTGATATAGTAGAGCACCTGGTGGATCGATGGAAGGTAAAGGAGCTAACTGGCCTTTCAGCCGAGGGGCGTAAAGCTCAGGACTATGTGTGTGCACTTCCTTCGAGAATTAGAAGGCTGCAGGAGAGAGCACAAGAAAAGGGCCAGGAAACCCCCCGTATTCCATTCAGTGGGATCTTTGATAGAGAAATGAACCTTCTAAGGTCTTGAAAATGCCCTCGAGGGAACCAACTTGGAACAACCTGAATTCCACCCGTCTTTGGATTCTGCATGAAATGGTTGCTGGCGTGTGTGGTTAAAAGGAATAATGCCTGGCCCTCCATAAAATCTAACATGTCTTGGCGCGCTTACAATGCACCATCTAGCTGGCCTATACCTGTCCGAAATCACATGTGCCCGGCTCAAATTAAGATTCTCTGGCTACACCAAAACCCTGGGTGGGCACCACCCGATGACTCCCCCCTCCCCT | |||||||||
gi|109839833|gb|DW238394.1|DW238394 GH_RTMF_20R_B05_InvR_02Aug04_045 Root (free) - 3 weeks after planting Gossypium hirsutum cDN ACCTTGGAAGGTTCATTATAT EST sequence (targeted fragment marked with yellow): CCCTTGAATTGAGTTTACGTGACACAAAAACAGAAGCGTATTAAAGCATGATATTTCACTAATTTTCCTTCCACCCACAACTCAAAACATCAAAATAACTAAAAAGACAACACCATAACAAAGTTGACAACATTGACTGCAACAAATATCTAAATCAAAAACTAAAATTACTGAAACACACCCAACCACTTAGAGAAGTTCTCAAACTCTGTGTAATCACTGTCGGAGATCATAGTCTGATACCATGCTTTGCCTGCTGACTTGATTGCTGTTGCCTCCTCCTTAGAAATGGGCTTCCTCTTCTTGTCAAGCTTCTCCTTCTTAGCTTTAACACGTTGTGCCTCGGCTAAAAGAGACATCCTCCTAGCAGTCTTCGCATATGGGTTCAACTTCAGCATAGCATTCAAGTTCTTGAGTGGGTTCTTCTTCAAAGGTGCCCTCTTGATCTCCTTCTTAAAGGGCTTCACAACCGACTGCACCTCATCAAAGTTGATAATCCTACCCAGATCAGCGTTCACCATCTTAGATCGAGGCAGTACGTACCCTTTCTTCTTCTCAGAAGGCTTATCAAATGACCCGTAAATTGTGTCCAGCTTCTCGTAAGCCGATTTGGTCCAAATAATGAACCTTCCAAGGTGACCACCAGGTGCCAGTTTCAACAGATTAAGCCTCTCCACGTTGGCAACCTCCA | |||||||||
gi|164256515|gb|ES812105.1|ES812105 UFL_263_89 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence ACCTTGGAAGGTTCATTATAT EST sequence (targeted fragment marked with yellow): GGCACGAGCAATATCAAAAAGACAAAAGAGACTTGTAAACTGATTAATTTCTTGTTCTCATATTATAGAAACTATTCCACTAGCCATAGAATGTCGAAAACAGGGGAGGAGGACAAAACAGAAGCGTATTAAAGCATGATATTTCACTAATTTTCCTTCCACCCACAACTCAAAACACCAAAATAACTAAAAGGACAACACCATAACAAAGCTGAAAACATTGTCTGCAACAAATATCTAAATCAAAAACTAAAATTACTGAGACACACCCAACCACTTAGAGAAGTTCTCAAATTCTGTGTAATCACTGTCGGAGATCATAGTCTGATACCATGCTTTGCCTGCTGACTTGATTGCTGTTGCCTCCTCCTTAGAAATGGGCTTCCTCTTCTTGTCAAGCTTCTCCTTCTTAGCCTTAACACGTTGTGCCTCGGCTAAAAGAGACATCCTCCTAGCAGTCTTCGCATATGGGTTCAACTTCAGCATAGCATTCAAGTTCTTGAGTGGGTTCTTCTTCAAAGGTGCCCTCTTGATCTCCTTCTTAATGGGCTTCACAACCGACTGCACCTCATCAGAGTTGATAATCCTACCCAGATCAGCATTCACCATCTTAGATCGAGGCAGTACGTACCCTTTCTTCTTCTCAGAAGGCTTATCAAATGACCCGTAAATCGTATCCAGCTTCTCGTAAGCCGATTTGGTCCAAATAATGAACCTTCCAAGGTGACCACCAGGTGCCAGTTTCAACAGATTAAGCCTCTCCACGTTGGCAACCTCCACTCCAGGAATGTTACGGAAGGCTTTTACAAGCTTAGCTCCCTCAGTTCCGTAAACAATCAAAGGACCCTTTACGGGAAATGTACCTCCGATTCCTCATTTTTCCTTTTCCGGGTCGGAATTCCTTGGGTGGCCCTATGCCTTTTTCACCTTCAGGGTATGGCTCCGATCTGGTTTCAAAACCCTTGATGGCACCCCAAAGGTTTTCTCAACGCTCCTCAACAGCGGTCAAAAATTGACCAGGGGCATCCCTCGGGCACGCCCTCATGGGGGGGGCCCCGGGGCCTTGAACAAGGGAAGGAGCAACCGGAAGGGGGGAAGGGGAAAAACACCGGGGGAACCCCTTTGTGGTAACGTTTGATTTTCCCGGGGCCCCGGGGCCCCCAAATTTGGTAGGAGAAGAAAACAGGGGTCCCCCCCGGGAACCATGTTTTCCCCAAAGACCCCCTTGGGCCCGCGGCCGGGGGGGGAGACCCCCCCCCCCCCCAGGAAAAACAAAGAGGGGAAAAATAGGGGGAGAAAAAAGCGCCCACCCACCCCCGGGGGAACCCCCCCC | |||||||||
gi|109874783|gb|DW503757.1|DW503757 GH_TMIRS_077_D05_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc ACCTTGGAAGGTTCATTATAT EST sequence (targeted fragment marked with yellow): ATCTCCATTTCATCAACAAAAAAACCTTATAACAAGGTTTAAGTCAACATGAAAATGTGTCGTTTATTTCTTCAACTATGCCTTGGTTTAACTCTCTTATCGGGTCTTGCTAAACCAGACATTGACCCCCTTCAAGATTACTGCATTGCAGACACTAAATCCCCTTTTTACCTCAATGGTGCACCCTGTCTCAACCCAACTCTGGCTCATTCCTCCCACTTCACCACCTCGGCTTTAGCCAAAGCTGGTGACACCAAGGCTAACCAATTCGGCTTCAGTGTCACCCTCACCACCCTTGCAAATTTGCCTGGAATTAACACCATGGGCCTCACCATGGCCCGTGTCGACATAGCAGCTGACGGCCTTGTTCCACCCCATTCCCACCCTCGTGCTTCCGAAGTCACCATTTGTCTTCAGGGTGTTGTCCTTGTGGGCTTTGTGGATACCTCTAACCGCTTATTCACTCAAAAACTTGAGCCCGGTGACTCATTCGTTTTCCCCAGAGGACTCATCCATTTTCTGTATAACATGGAGCCAAAGAAGCCTGCTTTAGCTATCTCTGGGCTCAGCAGCCAAAACCCAGGCACACAAATAGCTTCAAGGGCCGCTTTCGTGTCCAATCCACCCATTCCCGAAGTTGTTTTGGAAAAGGCATTTCAAATCAGCCACCAGGACGTTGCCAAGATACGTAAAAACCTTGGCGGCTGACCTATGTGATTGTGTGTTTCTCAGAAATGGGATCGTTGCATATTATTATTTGATTCTTACCTTTGATTATGATGTAGGAAAAAAATGGTAGTTCAAGTCTTTATTCACATAAAATAGACCTTCCAACGTCGTATAATGTGTATTATTAT | |||||||||
gi|109854112|gb|DW483091.1|DW483091 GH_RMIRS_039_H12_082_F Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA ACCTTGGAAGGTTCATTATAT EST sequence (targeted fragment marked with yellow): AAAATTCATAAACCAAAAACTCTTTTTTAACACTCTGCCTCCTTTCCCCATTTATGTAAAATTCATAAAGGCAAAGAAGCAAAAAAAAAGCTCATTGATTTCTTCAAAGTGATTTGTTTGTTTAATAATGTGGGCCAAACACAACATGTTATCATCAACAACAACAAGAGCCAGCATGTTGTTCATGTTATGGCTATTGTTTTCCTCTTGGGTTTTTTCCTTGGTTTCAGCCACTGTTTCTTACGATAGCAAAGCTATCATCATTAATGGCAGAAGAAGGATTCTCCTTTCTGGTTCTATTCATTACCCCAGAAGCACGCCTGAGATGTGGCCTGATCTTATAGCAAAGGCTAAAGGAGGAGGGTTAGATGTTATACAAACATATGTTTTCTGGAATGGACATGAGCCTTCCCCTGGAAAATATTATTTTGAGGATAGATATGATCTGGTTAGATTTGTTAAGCTGGTCCAACAAGCTGGTCTTTATGTTAATCTCAGAATTGGTCCCTATGTTTGTGCTGAATGGAACTTTGGGGGATTCCCTGTTTGGCTCAAATATGTTCCTGGTATTGCTTTCAGGACAGATAATGGACCTTTCAAGGCTGCAATGCAAAAATTCACAGCGAAGATAGTCAACATGATGAAAGCAGAGAAGCTGTTTCAGACTCAGGGAGGTCCAATAATTATGGCTCAGATTGAGAATGAGTTTGGTCCAGTCGAATGGGAAATCGGTGCTCCCGGCAAATCTTACACCAAATGGGCTGCACAAATGGCAGTCGGACTCCGGACCGGTGTCCCGTGGATTATGTGTAAGCAAGACGATGCACCTGACCCTGGATTGTCT | |||||||||