| mature miRNA: ACCTTGGAAGGTTCATTATAT species: Gossypium raimondii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|48819476|gb|CO120789.1|CO120789 GR__Eb024J10.r GR__Eb Gossypium raimondii cDNA clone GR__Eb024J10 3', mRNA sequence ACCTTGGAAGGTTCATTATAT EST sequence (targeted fragment marked with yellow): ACTTGGAGAAGTTCTCAAACTCAGTGTAATCACTGTCCGAGATCATAGTCTTATACCATGCTTTGCCTGCATGACTTGATTGCTGTTGCGTCCTCCTTAGACACGGGCTTCCTCTTCTTGTCAAGCTTCTCCTTCTTAGCGTTAACACGTTGTGCCTCAGCCAAAAGAGCCATCCTCCTTGCTGTCTTAGCATATGGGTTCAAGTTCAGCATAGCATTCAAGTTCTTAAGAGGATTGTTCTTCAATGGTGCCCTCTTGATATCCTTTTTAATTGGCTTCACCACGGACTGCACCTCATCGGAGTTAATTATCGTACCGAGATCCGCATTCACCATCTTAGAACGAGGCAAGATGTACCGTTTCTTCTTCTCGGAAGGCTTCTCAAATGACCCATAAATCGAATCCAGCTTCTTGTAAGCCGATTTGGTCCATATAATGATCCTTCCAAGGTGTCCTCCAGGAGGGAGTTTCAATAGATTAAGTCTCTCTACATTGGCAACCTTGACTCCAGGAATGTTACGAAAGGCCTTAACGAGCTTTGCCCCCTCTGTTCCATAAACAATCAATGGACCTTTACGGGAAATGTACCTCCGGTTTCTCATTTTCCCTTTCCCGGGTCGGATTCCAACTGCTGTAAGGGAGCCTTTTCGCACG | |||||||||
gi|48753288|gb|CO083807.1|CO083807 GR__Ea49A20.r GR__Ea Gossypium raimondii cDNA clone GR__Ea49A20 3', mRNA sequence ACCTTGGAAGGTTCATTATAT EST sequence (targeted fragment marked with yellow): AGACTAATTCAACATTGAATATTTGGGAAAAAAGAAATCTGAGCAGCAAAGTATCAACATGGAAGTAACAATATATGTAAATCAAGATGTCATGACCACCAAATCTATTTCTTTATAAGCAATAATTGGACAGTAGCATATAGGTGAAAATCAAGTAAAAGTTTTAAATTAAGTGGAAATCTTTCACTTTCCTAAAGGGAAAAAAGATGAGAGAGAGAGAGAGAGAAACACCTTTTGAAGAACATAACCATCATGTACTGGGGCAACAGTAGTTGATCCTCCACCACTGAAAGGTTTAACAGTTATTCGTAAAGACATGTTAGTAAAAGAACGCGAGGAAAATTATACCAGTATAGAGAAGTGGAGATACTGCTTCATTTATACGAAAGTAGACATAGGCAACTGATCCATAAATCTCAGATTCTCATAATTCACAGTCCAAATATGAAAATAAGCAACCTTTCAAGGTTCTCTCACTTTTCTACAGATTAATATTTAAGTTGAATGAGAGTTGTTGTTACTCTTACACGCAACTTCCAGCATTCTATATTCAACCTTCAACAAAGTAATATTGACAGCTGGATAAAAGAAGTCCCAAAGGAAAAGAAAAGAATGGTAATAATAGGAGTAGGATCTGATGCCAGTAATATCAGTCCGAGTTCAGTATAGTTTATGGGGAAGATGGCTATTTTATTTATTTCC | |||||||||
gi|48797349|gb|CO098663.1|CO098663 GR__Ea23B17.r GR__Ea Gossypium raimondii cDNA clone GR__Ea23B17 3', mRNA sequence ACCTTGGAAGGTTCATTATAT EST sequence (targeted fragment marked with yellow): CATGATATTTCACTAATNTTCTTTCCACCCACAACTCAAAACACCAAAATAACTAAAAGGACAACACCATAACAAAGCTGAAAACATTGTCTGCAACAAATATCTAAATCAAAAACTAAAATTACTGAGACACACCCAACCACTTAGAGAAGTTCTCAAATTCTGTGTAGTCACTGTCGGAGATCATAGTCTGATACCATGCTTTGCCTGCTGACTTGATTGCTGTTGCCTCCTCCTTAGAAATGGGCTTCCTCTTCTTGTCAAGCTTCTCCTTCTTAGCCTTAACACGTTGTGCCTCGGCTAAAAGAGACATCCTCCTAGCAGTCTTCGCATATGGGTTCAACTTCAGCATAGCATTCAAGTTCTTGAGTGGGTTCTTCTTCAAAGGTGCCCTCTTGATCTCCTTCTTAATGGGCTTCACAACCGACTGCACCTCATCAGAGTTGATAATCCTACCCAGATCAGCATTCACCATCTTAGATCGAGGCAGTACGTACCCTTTCTTCTTCTCAGAAGGCTTATCAAATGACCCGTAAATCGTATCCAGCTTCTCGTAAGCCGATTTGGTCCAAATAATGAACCTTCCAAGGTGACCACCAGGTGCCAGTTTCAACAGATTAAGCCTCTCCACGTTGGCAACCTCCACTCCAGGAATGTTACGGAAGGCTTTAACAAGCTTAGCTCCCTCAGTTCCGTAAACAATCAAAGGACCTTTACGGGAAATGTACCTCCGATTCCTCATTTTTCCTTTTCCGGGTCGGATTTCTTGGCTGTCCTTAGCCTTTTCAACATCAGGATATGCTCCGATGGGTTTCAAAACCTTGATTGCACCCGAGATCCC | |||||||||
gi|48799940|gb|CO101254.1|CO101254 GR__Eb0027H07.r GR__Eb Gossypium raimondii cDNA clone GR__Eb0027H07 3', mRNA sequence ACCTTGGAAGGTTCATTATAT EST sequence (targeted fragment marked with yellow): AATCGAGTCAAGTTTCTCGTAAGCTGATTTGGTCCAAATAATGAACCGTCCAAGGTGTCCACCAGGAGCGAGTTTCAACAAATTGAGCCTCTCCACATTGGCAACCTCGACTCCAGGGATGTTACGGAAGGCTTTAACAAGCTTTGCCCCTTCAGTTCCATAAACAATCAAAGGACCTTTTCGAGAAATGTACCTACGGTTCCTCATTTTCCCTTTTCCGGGTCGGATCCCTTGACTGTCCTTAGCCTTTTCCACATCCGGATATGCTCCGACCTGTTTCAAAACCTTAATTGCAGCCGAGGTCTTTTCCACACTCTCCACAGCGTCCGATATGACCAGAGGCATCTCCGGAACAGACTCGATACGGTGACCACGTGCCATCACGAGTGAAGGAACAGCAGAAGCGGCGATTGCGGAGGCAACGGCGTACCTCTTCTGGTTAACATTGATCTTCCGGTGCCAACGGCGCCAGATCTTGGTAGGAGCAAACATACGGCCTCCACGACACATGTTCCCAAAAGCACCTTGGCCAGCACGGTGAGTACCACCACCAGGAACACGCGGGATACGGGAGACGGCACGGCCAGTTCCCCACGATTCAGCTGAGGTCTGGTGACCAGCACGCTTGGAGACAGCGTAAGGCTGGCGGCTGTTCTTGGAAATGTTATCGTGGACGAAGGTGACGATGTCTGGTCGGATGGAGGCTTTCATGACATCAGCGAGAGGAACAGTAGGCGTAGCGTCGGTAGCCATATCGGACTCTATGGTTTGCACCGAAACCAGAGGACGGGCGGCAACGGCTGCCATTGTTAGGGTTTTGGGCTTTGAGGATC | |||||||||
gi|48879729|gb|CO130751.1|CO130751 GR__Eb33K14.r GR__Eb Gossypium raimondii cDNA clone GR__Eb33K14 3', mRNA sequence ACCTTGGAAGGTTCATTATAT EST sequence (targeted fragment marked with yellow): TCAAATGACCCGTAAATCGTATCCAGCTTCTCGTAAGCCGATNTGGTCCAAATAATGAACCTTCCAAGGTGACCACCAGGTGCCAGTTTCAACAGATTAAGCCTCTCCACGTTGGCAACCTCCACTCCAGGAATGTTACGGAAGGCTTTAACAAGCTTAGCTCCCTCAGTTCCGTAAACAATCAAAGGACCTTTACGGGAAATGTACCTCCGATTCCTCATTTTTCCTTTTCCGGGTCGGATTTCTTGGCTGTCCTTAGCCTTTTCAACATCAGGATATGCTCCGATCTGTTTCAAAACCTTGATTGCACCCGAGGTTTTCTCAACGCTCTCAACAGCGTCGGAAATGACCAGCGGCATCTCCGGTACAGCCTCAATGCGGTGGCCACGTGCCATGACGAGGGAAGGAACAGCGGAGGCGGCGATGGCAGAAGCAACGGCGTAACGCTTCTGGTTAACGTTGATTTTCCGGTGCCAGCGGCGCCAGATCTTGGTAGGAGCAAACATGCGTCCACCGCGACACATGTTTCCGAAAGCACCTTGGCCTGCACGGTGAGTACCCCCACCAGGAACACGAGGGATACGTGAGACGGCACGACCGGTACCCCAGGATTCAGCTGAAGTTTGGTGACCAGCGCGTTTGGAGACGGCATAGGGTTGACGGCTGTTTTTGGATATATTGTCGTGAACGAAGGTGACGATGTCGGGTCGAATCGAGGCTTTCATCACATCAGCGAGAGGAACGGTTGGAGTGGCATCAGTAGCCATGTCGGACTCTATGGTTTGGACGGAGACAAGAGGGCGCGCGGCGGCGGCCATTTTGTAGGGTTTGGGTGAGGAGGGGGAGTGAAGATGGAGTAGAATG | |||||||||
gi|48749192|gb|CO079711.1|CO079711 GR__Ea42L01.f GR__Ea Gossypium raimondii cDNA clone GR__Ea42L01 5', mRNA sequence ACCTTGGAAGGTTCATTATAT EST sequence (targeted fragment marked with yellow): CAATAACATAAAGACTGAACATGCTTTTTAAGCTATTCAATTCTTTCTCATTTTAATAGAAACTATTCTCATATTCAGTTCTTTTACTCATTTTAATAGTAACTATTCTCACTGTCGCAGGGTGGAGGCCAAAAGAGCACGGCACAGGAGCATGCCATTCCCACCCTTTCTCTTGCACAAAATTGAAACAGCAAATACAAATAAAAATGTTAATACCAAACCAAAACTGATGCCGACCTTCATAATTTCTAAAGCCAAAAGCTAAATCACTGCGATACACCCAACCACTTGGAGAAGTTCTCAAACTCAGTGTAATCACTGTCCGAGATCATAGTCTTATACCATGCTTTGCCTGCTGACTTGATTGCTGTTGCCTCCTCCTTAGACACGGGCTTCCTCTTCTTGTCAAGCTTCTCCTTCTTAGCCTTAACACGTTGTGCCTCAGCCAAAAGAGCCATCCTCCTTGCTGTCTTTGCATATGGGTTCAACTTCAGCATAGCATTCAAGTTCTTAAGAGGATTCTTCTTCAATGGTGCCCTCTTGATCTCCTTTTTAATTGGCTTCACCACGGACTGCACCTCATCGGAGTTAATTATCCTACCGAGATCCGCATTCACCATCTTAGAACGAGGCAAGATGTACCGTTTCTTCTTCTCGGAAGGCTTCTCAAATGACCCATAAATCGAATCCAGCTTCTCGTAAGCCGATTTGGTCCATATAATGAACCTTCCAAGGTGTCCTCCAGGAGCGAGTTTCAATAGATTAAGTCTCTCTACATTGGCAA | |||||||||
gi|48828158|gb|CO126548.1|CO126548 GR__Eb10K03.f GR__Eb Gossypium raimondii cDNA clone GR__Eb10K03 5', mRNA sequence ACCTTGGAAGGTTCATTATAT EST sequence (targeted fragment marked with yellow): AACCAAAAACTCTTTTTTAACACTCTGCCTCTTTTCCCCATTTATGTAAAATTCATAAAAGCAAAGAAGCACAAAAAAAAAGCTCATTGATTTCTTCAAAGTGATTTGTTTGTTTAATAATGTGGGCCAAACACAACATGTTATCATCAACAACAACAAGAGCCAACATGTTGTTCATGTTATGGCTATTGTTTTCCTCTTGGGTTTTTTCCTTGGTTTCAGCCACTGTTTCTTACGATAGCAAAGCTATCATCATTAATGGCAGAAGAAGGATTCTCCTTTCTGGTTCTATTCATTACCCCAGAAGCACGCCTGAGATGTGGCCTGATCTTATAGCAAAGGCTAAAGAAGGAGGGTTAGATGTTATACAAACATATGTTTTCTGGAATGGACATGAGCCTTCCCCTGGAAAATATTATTTTGAGGATAGATATGATCTGGTTAGATTTGTTAAGCTGGTCCAACAAGCTGGTCTTTATGTTAATCTCAGAATTGGTCCCTATGTTTGTGCTGAATGGAACTTTGGGGGATTCCCTGTTTGGCTCAAATATGTTCCTGGTATTGCTTTCAGGACAGATAATGGACCTTTCAAGGCTGCAATGCAAAAATTCACAGCGAAGATAGTCAACATGATGAAAGCAGAGAAGCTGTTTCAGACTCAGGGAGGTCCAATAATTATGGCTCAGATTGAGAATGAGTTTGGTCCAGTCGAATGGGAAATCGGTGCTCCCGGCAAATCTTACACCAAATGGGCTGCACAAATGGCAGTCGGACTCCGGACCGGTGTCCCGTGGATTATGTGTAAGCAAGACGATGCACCTGACCCTGTGATAAACACCTGCAATGGATTCTACT | |||||||||