| mature miRNA: ACCTTGGAAGGTTCATTATTT species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|164364579|gb|ES840296.1|ES840296 UFL_063_52 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence ACCTTGGAAGGTTCATTATTT EST sequence (targeted fragment marked with yellow): GTGGATCCAAGAATTCGGCCGAGGAAAATTTCGATGAAAATTGGAAATGAGGATATTTTTAACATTCGGTGTTGGTCTTTTTTTGTGTGTTTTCCTTTGATCAAGTTCCTTAGCACAAGAATCAGATGCTTTAGTCCCCAACTATTGTGCATTTTCCATAGTCTAGACTCTAGAACAATGTATTTAGCCAATCAAGTGCCAAGTTCTAGCACCATGAATGCCTTGAGTTCGAAGGACCCCAAGGCAAAAAGTGATGGGAGAATGATGCTTAATTTATCTACTTAATAATCTTTACAGCTAACAAGTTTCTTAACCATAGGTTGTTTGATTTAAAAATATAAAGCTATGTTAGCAGAAGCCAGAAAGTAAAGCTTTTGGAATAATCCACCTTCCAAGTTACAAGTCATGTATATAGGGATACTCATTGGGGGAAAAGGTCACTTCTAAGAAAGAACGGTTTCTACCTGGCAGAGTCACATGGGGTTCTGTTTGTGATTGGAAAGTGGAAAAGGGTGTGGAATAACAATTTCTTGTTCAAGCGGAGAACTACGATTTCAGTTCGGACCCTGGTTCCTAGTGAGCCCCACTGCCCAACATTACCTCGCTAGGCCATTGGCCCATCTTCATGTTTAGATTGCCTAAGAAAATGTCTTTTCTTTGTGCCTTCTATTACTGCCTTGTATCTTATGAAAGGCTTTACAGGTCCAAGTGGAGTCTATCACTTGGTCATTGTTCCTCCATTTTCCTTTTTAGCACTGATTTTACTCATACCGTGTTAGAAATCTGAGATGTTCTCTTTACTAAATTTGTTGGGTATATTTTGCAGGTCACGGAAGTTTGTGTATTTTCCAGGAAGTAAGATGGTAAGCAACAAGACGAGAACCGGTTTTAAACTCAACGGAAGTAAATGGGTGGAACCTAAAAGGGTAAAATTTCAACACTTTTCCGCGGGCAGCCAAAATAAGTGGAAACTACTGGTAGAATTCTGTAATTTTTGTATACTCATTCCTTTTTGGTATCCACTTCGATGGAGGAAGGAAAAAATAAA | |||||||||
gi|164256515|gb|ES812105.1|ES812105 UFL_263_89 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence ACCTTGGAAGGTTCATTATTT EST sequence (targeted fragment marked with yellow): GGCACGAGCAATATCAAAAAGACAAAAGAGACTTGTAAACTGATTAATTTCTTGTTCTCATATTATAGAAACTATTCCACTAGCCATAGAATGTCGAAAACAGGGGAGGAGGACAAAACAGAAGCGTATTAAAGCATGATATTTCACTAATTTTCCTTCCACCCACAACTCAAAACACCAAAATAACTAAAAGGACAACACCATAACAAAGCTGAAAACATTGTCTGCAACAAATATCTAAATCAAAAACTAAAATTACTGAGACACACCCAACCACTTAGAGAAGTTCTCAAATTCTGTGTAATCACTGTCGGAGATCATAGTCTGATACCATGCTTTGCCTGCTGACTTGATTGCTGTTGCCTCCTCCTTAGAAATGGGCTTCCTCTTCTTGTCAAGCTTCTCCTTCTTAGCCTTAACACGTTGTGCCTCGGCTAAAAGAGACATCCTCCTAGCAGTCTTCGCATATGGGTTCAACTTCAGCATAGCATTCAAGTTCTTGAGTGGGTTCTTCTTCAAAGGTGCCCTCTTGATCTCCTTCTTAATGGGCTTCACAACCGACTGCACCTCATCAGAGTTGATAATCCTACCCAGATCAGCATTCACCATCTTAGATCGAGGCAGTACGTACCCTTTCTTCTTCTCAGAAGGCTTATCAAATGACCCGTAAATCGTATCCAGCTTCTCGTAAGCCGATTTGGTCCAAATAATGAACCTTCCAAGGTGACCACCAGGTGCCAGTTTCAACAGATTAAGCCTCTCCACGTTGGCAACCTCCACTCCAGGAATGTTACGGAAGGCTTTTACAAGCTTAGCTCCCTCAGTTCCGTAAACAATCAAAGGACCCTTTACGGGAAATGTACCTCCGATTCCTCATTTTTCCTTTTCCGGGTCGGAATTCCTTGGGTGGCCCTATGCCTTTTTCACCTTCAGGGTATGGCTCCGATCTGGTTTCAAAACCCTTGATGGCACCCCAAAGGTTTTCTCAACGCTCCTCAACAGCGGTCAAAAATTGACCAGGGGCATCCCTCGGGCACGCCCTCATGGGGGGGGCCCCGGGGCCTTGAACAAGGGAAGGAGCAACCGGAAGGGGGGAAGGGGAAAAACACCGGGGGAACCCCTTTGTGGTAACGTTTGATTTTCCCGGGGCCCCGGGGCCCCCAAATTTGGTAGGAGAAGAAAACAGGGGTCCCCCCCGGGAACCATGTTTTCCCCAAAGACCCCCTTGGGCCCGCGGCCGGGGGGGGAGACCCCCCCCCCCCCCAGGAAAAACAAAGAGGGGAAAAATAGGGGGAGAAAAAAGCGCCCACCCACCCCCGGGGGAACCCCCCCC | |||||||||
gi|109839833|gb|DW238394.1|DW238394 GH_RTMF_20R_B05_InvR_02Aug04_045 Root (free) - 3 weeks after planting Gossypium hirsutum cDN ACCTTGGAAGGTTCATTATTT EST sequence (targeted fragment marked with yellow): CCCTTGAATTGAGTTTACGTGACACAAAAACAGAAGCGTATTAAAGCATGATATTTCACTAATTTTCCTTCCACCCACAACTCAAAACATCAAAATAACTAAAAAGACAACACCATAACAAAGTTGACAACATTGACTGCAACAAATATCTAAATCAAAAACTAAAATTACTGAAACACACCCAACCACTTAGAGAAGTTCTCAAACTCTGTGTAATCACTGTCGGAGATCATAGTCTGATACCATGCTTTGCCTGCTGACTTGATTGCTGTTGCCTCCTCCTTAGAAATGGGCTTCCTCTTCTTGTCAAGCTTCTCCTTCTTAGCTTTAACACGTTGTGCCTCGGCTAAAAGAGACATCCTCCTAGCAGTCTTCGCATATGGGTTCAACTTCAGCATAGCATTCAAGTTCTTGAGTGGGTTCTTCTTCAAAGGTGCCCTCTTGATCTCCTTCTTAAAGGGCTTCACAACCGACTGCACCTCATCAAAGTTGATAATCCTACCCAGATCAGCGTTCACCATCTTAGATCGAGGCAGTACGTACCCTTTCTTCTTCTCAGAAGGCTTATCAAATGACCCGTAAATTGTGTCCAGCTTCTCGTAAGCCGATTTGGTCCAAATAATGAACCTTCCAAGGTGACCACCAGGTGCCAGTTTCAACAGATTAAGCCTCTCCACGTTGGCAACCTCCA | |||||||||
gi|164248044|gb|ES802754.1|ES802754 UFL_529_09 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence ACCTTGGAAGGTTCATTATTT EST sequence (targeted fragment marked with yellow): AGGCTCGACACTAGTTAGGATCCANAAGAATTGCGGCACGAAGGATTTATATACACTTCGTTCCAAGAAAGGGCAACTTTTATCTCCCATGGGAATACAGGCAGGCTCGCCAAGGAGTATGGGGATATTAAATTGGCTCAAATTTGCGGTAGCATTGCCTCAGATGAGAAGCGCCACGAGACAGCCTATACCAAAATCGTTGAAAAGCTGTTTGAGATTGATCCTGATGAAACAGTTCGGGCATTTGCTGACATGATGAGGAAGAAAATCACCATGCCAGCTGAGTTCATCTATGATGGCCGAGATTACAACCTATTTGACCACTACTCAGCTGTCGCCCAAAGGATCGGGGTTTACACTGCCAAGGACTATGTTGATATAGTAGAGCACCTGGTGGATCGATGGAAGGTAAAGGAGCTAACTGGCCTTTCAGCCGAGGGGCGTAAAGCTCAGGACTATGTGTGTGCACTTCCTTCGAGAATTAGAAGGCTGCAGGAGAGAGCACAAGAAAAGGGCCAGGAAACCCCCCGTATTCCATTCAGTGGGATCTTTGATAGAGAAATGAACCTTCTAAGGTCTTGAAAATGCCCTCGAGGGAACCAACTTGGAACAACCTGAATTCCACCCGTCTTTGGATTCTGCATGAAATGGTTGCTGGCGTGTGTGGTTAAAAGGAATAATGCCTGGCCCTCCATAAAATCTAACATGTCTTGGCGCGCTTACAATGCACCATCTAGCTGGCCTATACCTGTCCGAAATCACATGTGCCCGGCTCAAATTAAGATTCTCTGGCTACACCAAAACCCTGGGTGGGCACCACCCGATGACTCCCCCCTCCCCT | |||||||||
gi|109853555|gb|DW482534.1|DW482534 GH_RMIRS_036_H07_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq ACCTTGGAAGGTTCATTATTT EST sequence (targeted fragment marked with yellow): ATCAGGCAGAGGACGAGACAAGACCACTTTTCTCCTTTTAACTCTATCCTAATCATTGCACTGCAGCTTTCAGCAGACCTTTTCAAACCCTCTCTGCCACAGACAAACTCCCTAGCAACTATTGTCCCATCAGTTTTATACTGTGAAGAAAAGTGACCGGCTTTGGAGCTAAATCCCATACGTCTAGCATACTCATCATAGAAAGTTCTAGCAGCATCTTCAGAATTAAATTCCATGCCCACATATGGTTCAGAAATCCCATCTTCTTCACAAGCTAAAGAATTCTCCACATGATTTGCTTCTCCACCTTCACTAGGTTCAGCATCCCCGTCATCTGACATTCCATGATGGCTCAAGCCCCCTTCTGAATCAATCACATGAAAATCCATACTAATCCAGCATTTAATACTATCTCACCATAGTGCATTAGATTATCCCTTGGCCCTTAGAATATTCTATTATTTTTTTAAGCATTCTTCATTTGTTTTCTGGAAATGTAAATCTCGAGAACCCTGAATGACAAAACTGTGAGTTGAAAGGGGAGAGGAAAGACCTTCAAGTAAAAATAAAAATAAAAAAGGAGCCTTCGAAGGTTTGGGAGTGAAATTATTTTTTCAAAGTTAGAAAACCCTAAACTCAGGCTTGTTTAAACATTTCAAATTTGCT | |||||||||
gi|164274449|gb|ES847765.1|ES847765 UFL_147_71 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence ACCTTGGAAGGTTCATTATTT EST sequence (targeted fragment marked with yellow): CAAACACCTCCAAAATATACAATTTCTTCTCTCTCCACGCTCCACACATTCTCTTCAATTTCAATAAATTAAATCTTTTATGAAATGTTTCTCTTCTTCTTCTTCTTCCATACTTCCTTTCCCTTCATCATCCTCCTCCGGCCTAGTACTTCCCAAAAACATGTCTCCGATTTCAACTCTTTCCCACCCTCTAGTCTTCAAATTCAATCTTAATTCTTCACCTAAGCTTCTTAAATCGTTTGACCCAGAGTTTTTCCTCCATCTCCGAACCCGCAAAACAAGTTCTCTTGGAGGAATTTTGACCGACAAAACTGGGGTGCGCGACTCTTCAAGAACTATGATTAAAACTTCTGTGTTAAAGGAGTCTAGGGACAGAGACGATGGGATTCAAGCGCTTGAACAAGAAGTAGAAGGTTTCATTGACGGATCAATGCGGGTTCAAGGTTTCGAGTCCACTTTGAATCGTCTGAGCAAGTGGTTGGTGTCAGCTTTGTTTGGTGGGGTGATACTTTGGAGGCATGACGCGGAGGCTTTATGGATGGCGATGGGGTCGATTGTGAATGCGGTGCTCTCAATTGGACTGAAACGGTTGCTGAATCAGAGAGCAACAAGGTGGCGGCCTTTAGTCCGACCCGTGGAATGCCGTCTGTCTCATGACGAGATCAATAATGCATAAGTGGGCGGCGTTGACTAGAAGCGTACAAAGTTGGAAAGGGCTAAGGAAAAAATGAACCTTTTAAGGGG | |||||||||
gi|54124251|gb|CO499760.1|CO499760 G.h.fbr-sw09150 G.h.fbr-sw Gossypium hirsutum cDNA, mRNA sequence ACCTTGGAAGGTTCATTATTT EST sequence (targeted fragment marked with yellow): GCTTAGCGTGGTCGCGGCCGAGGTACTCCTCAGATGTGGCCTGATCTTATAGCAAAGGCCAAAGAAGGAGGCTTGGATGTTATACAGACTTATGTTTTCTGGAATGGACATGAGCCTTCTCCTGGAAATTATTATTTTGAGGATAGATATGATCTGGTTCGATTTATTAAGCTGGTCCAACAAGCTGGCCTTTATGTTCATCTCCGGATTGGTCCCTATATTTGTGCTGAATGGAACTTTGGGGGATTTCCTGTTTGGCTCAAATATGTCCCCGGCATTGCTTTCAGGACTGATAATGAACCTTTTAAGGCAGCAATGCAAAAATTTACAGAGAAGATAGTGAGTATGATGAAAGCTGAAAAGCTGTTTGAGACTCAAGGAGGTCCAATAATAATGTCTCAGATTGAGAATGAATTTGGTCCGGTTGAATGGGAAATCGGTGATCCAGGTAAAGCTTACACCCAATGGGCAGCACAAATGGCAGTGGGGCTCGACACCGGTGTCCCATGGATTATGTGCAAGCAAGATGATGCTCCTGACCCTGTGATAAACACCTGCAATGGATTCTACTGCGAAAACTTCACTCCCAATGCAAAATATAAGCCAAAGATGTGGACTGAAAACTGGACTGGCTGGTATACGGAGTTTGGTGGTGCAGTGCCTACCAGACCAGCAGAAGACATAGCATTTTCAGTTGCAAGATTCATACAGAATGGTGGTTCATTTGTTAATTATTATATGTACCTGCCCGGGCGGCCGCTCGAAGC | |||||||||
gi|109849285|gb|DW478264.1|DW478264 GH_RMIRS_013_C04_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq ACCTTGGAAGGTTCATTATTT EST sequence (targeted fragment marked with yellow): GGTATCTCACCGGACAGCTTATTCTTGAAGAGATAAACATGCGTTAGATTCTTCAAAGAAAACAGCCTACTAGGTATTGGACCTTCCAAGTTGTTTCTAGCTAAGTCCAAGTGCTGCAGATTGGTAAGGTTGTTGAAAGATTCAGGGATTTCGCCTACCAGATTGGTGAATGTCATCCACAAAAAGGACAACTTCGTTAACTGACCAAATTCCTGAGGTATCTTCATGGGGGTAAAGTCATTATAAGCCAAACCCAAAACCTCGAGATTGGATAAGTTTCCAATTTCCTTAGGAAATGTCCCGTTGAACTGGGTTTGGTACATGTACAAGGTTTGCAACTCTGGTAGTCTTCCAATACTTGATGGAATATTACCAGAGAAATTATTAGCACCAACATCCAAGTAAACCAGAGCTGACAACCGGTCAATCTCGTCAGGAATTGGACCAACAAAATAGTTTTGAGAGAGGTCTAAGGTCTGGAGCTTTGAACAATTGTAAAGAGCTGGGAACTCTCCAGGGATGTAATTGAAAGCAAGGTCAAGGAAAGTGAGGTTTTTAAGGTCGCATATTGTTGAAGGAATCGGTGTGGTAATGTTCTTGTCACGGAGATGAACTTCGGTGACAGAATTGGCGGTGCAGTTGATCTCCGGCCAATCGCACGGTGAGGAAGATGAGTTCCAGGATTGAAGGAATGGTGGATTGCCCAGTTGCTGTTTAAAGTTGAGAAGAACATCTCGTTCGGCATTTATGTCTTGTGAGGTTACTTTGA | |||||||||
gi|109854112|gb|DW483091.1|DW483091 GH_RMIRS_039_H12_082_F Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA ACCTTGGAAGGTTCATTATTT EST sequence (targeted fragment marked with yellow): AAAATTCATAAACCAAAAACTCTTTTTTAACACTCTGCCTCCTTTCCCCATTTATGTAAAATTCATAAAGGCAAAGAAGCAAAAAAAAAGCTCATTGATTTCTTCAAAGTGATTTGTTTGTTTAATAATGTGGGCCAAACACAACATGTTATCATCAACAACAACAAGAGCCAGCATGTTGTTCATGTTATGGCTATTGTTTTCCTCTTGGGTTTTTTCCTTGGTTTCAGCCACTGTTTCTTACGATAGCAAAGCTATCATCATTAATGGCAGAAGAAGGATTCTCCTTTCTGGTTCTATTCATTACCCCAGAAGCACGCCTGAGATGTGGCCTGATCTTATAGCAAAGGCTAAAGGAGGAGGGTTAGATGTTATACAAACATATGTTTTCTGGAATGGACATGAGCCTTCCCCTGGAAAATATTATTTTGAGGATAGATATGATCTGGTTAGATTTGTTAAGCTGGTCCAACAAGCTGGTCTTTATGTTAATCTCAGAATTGGTCCCTATGTTTGTGCTGAATGGAACTTTGGGGGATTCCCTGTTTGGCTCAAATATGTTCCTGGTATTGCTTTCAGGACAGATAATGGACCTTTCAAGGCTGCAATGCAAAAATTCACAGCGAAGATAGTCAACATGATGAAAGCAGAGAAGCTGTTTCAGACTCAGGGAGGTCCAATAATTATGGCTCAGATTGAGAATGAGTTTGGTCCAGTCGAATGGGAAATCGGTGCTCCCGGCAAATCTTACACCAAATGGGCTGCACAAATGGCAGTCGGACTCCGGACCGGTGTCCCGTGGATTATGTGTAAGCAAGACGATGCACCTGACCCTGGATTGTCT | |||||||||
gi|73861089|gb|DT463828.1|DT463828 GH_CHX14E04.r GH_CHX Gossypium hirsutum cDNA clone GH_CHX14E04 3', mRNA sequence ACCTTGGAAGGTTCATTATTT EST sequence (targeted fragment marked with yellow): GATTTGGTCCAAATAATGAACCTTCCAAGGTGACCACCAGGTGCCAGTTTCAACAGATTAAGCCTCTCCACGTTGGCAACCTCCACTCCAGGAATGTTACGGAAGGCTTTAACAAGCTTAGCTCCCTCAGTTCCGTAAACAATCAAAGGACCTTTACGGGAAATGTACCTCCGATTCCTCATTTTTCCTTTTCCGGGTCGGATTCCTTGGCTGTCCTTAGCCTTTTCAACATCAGGATATGCTCCGATCTGTTTCAAAACCTTGATTGCACCCGAGGTTTTCTCAACGCTCTCAACAGCGTCAGAAATGACCAGCGGCATCTCCGGTACAGCCTCAATGCGGTGGCCACGTGCCATGACGAGGGAAGGAACAGCGGAGGCGGCGATGGCAGAAGCAACGGCGTAACGCTTCTGGTTAACGTTGATTTTCCGGTGCCAGCGGCGCCAGATCTTGGTAGGAGCAAACATGCGTCCACCGCGACACATGTTTCCGAAAGCACCTTGGCCTGCACGGTGAGTACCCCCACCAGGAACACGAGGGATACGTGAGACGGCACGACCGGTACCCCAGGATTCAGCTGAAGTTTGGTGACCAGCGCGTTTGGAGACGGCATAGGGTTGACGGCTGTTTTTGGATATATTGTCGTGAACGAAGGTGACGATGTCGGGTCGAATCGAGGCTTTCATCACATCAGCGAGAGGAACGGTTGGAGTGGCATCAGTAGCCATGTCGGACTCTATGGTTTGGACGGAGACAAGAGGGCGCGCGGCGGCGGCCATTTTGTAGGGTTTGGGTGAGGAGGGGGAGTGAAGGTCGACGCGGCCGC | |||||||||