| mature miRNA: ACGAAGATCTGCATCATAAC species: Physcomitrella patens database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|208385282|gb|DC915082.1|DC915082 DC915082 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp ACGAAGATCTGCATCATAAC EST sequence (targeted fragment marked with yellow): GAATTTGTTACTTTCTACCTCTTGATTGTGGAAGTGAGTAGGAGAGGTTCGTGTTGCTGTGAAGAAGCTNGCGTGAGAGGGAGCTTGGGTTTTTCTCTTACNTATCTCCTCNATTACTGCTTTCANTTATCTTTTAGTTCAAGATGCAGATCTTTGTAAAGACCTTGACTGGAGAAGACCATCACCCTCGAGGTGGAGAGCTCCGATACAATCGATAACGTGAANACGAAGATCCAGGATAAGGAGGGGATTCCTCCTGACCANCNCAGGTTGATCTTTGCGGGCAAGCAATTGNAGGACNGTANAACGCTGGCGGATTACAACATACAGAAGGAGTCCACCTTGCNCTTGGNGCTTANGTTGCGGGGAGGCATGCAGNTCTTCNGGAAGACCCTGACGGNNAAGACGATTACCCTCGAGGTCGAGAGCTCANACNNNNTTGATAACNTGAAGACNAAGATTCNNGACNAGGAGGGNATCCCNCCCNACCAGCANANATTGANCTTTGNANGTNAGCNGNTGGAAGACNGGNGCACCCTTGCTGACTACNACATACATGAANGAGTCCNCNTTGCACTTGGNGCTTAAGTTGCNNGGAGGNNTGCATATCTTCGTGNCCACCCTGACTGGAAATACNATNACNCNCGANGTCGAGAGCTCTGACCCTGNTGACAACGTGANNANGA | |||||||||
gi|208389835|gb|DC938355.1|DC938355 DC938355 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. paten ACGAAGATCTGCATCATAAC EST sequence (targeted fragment marked with yellow): GGATTGTGCGCTTCTAGATACTGAATTTGTTTCGACCCTGCCTTGTTGAGTGGCCGTAGAGGCTCGACAGTTAGGATCAGTGTGCCGTTGAATTTAGTGATCGTGTAGCGACCAGTACGTCCTGTAAGGATGCAGATCTTCGTGAAAACTCTGACGGGGAAGACAATTACCTTGGAGGTCGAGAGCTCGGATACCATCGACAACGTCAAGACCAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCAGCAGCGATTAATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACGCTCGCCGACTACAACATCCAGAAGGAGTCTACCCTTCACTTGGTGTTGCGTCTTAGGGGAGGGATGCAGATTTTCGTGAAAACCCTAACGGGCAAGACGATCACCTTGGAGGTCGAGAGCTCCGACACAATTGACAACGTTAAGACCAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCAGCAGCGATTGATATTTGCTGGAAAGCAGCTAGAGGATGGCCGCACGCTCGCCGACTACAACATCCAGAAGGAGTCTACCCTTCACTTGGTGTTGCGTCTTAGGGGAGGGATGCAGATTTTCGTGAAAACCCTAACGGGCAAGACGATCACCTTGGAGGTCGAGAGCTCCGACACAATTGACAACGTTAAGACCAAGATTCAGGACAAGGAGGGAATTCCTCCTGACNAGCAGCGATNGATATTTGCTGGAAAGCAGCTAGAGGATGGCCGCACGCTCGCCGACTACAACATCCANAAGGAGTCCACTCTTC | |||||||||
gi|208400643|gb|DC904843.1|DC904843 DC904843 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp ACGAAGATCTGCATCATAAC EST sequence (targeted fragment marked with yellow): GATTGTGCGCTTCTAGATACTGAATTTGTTTCGACCCTGCCTTGTTGAGTGGCCGTAGAGGCTCGACAGTTAGGATCAGTGTGCCGTTGAATTTAGTGATTGTGTAGCGACCAGTACGTCCTGTAAGGATGCAGATCTTCGTGAAAACTCTGACGGGGAAGACAATTACCTTGGAGGTCGAGAGCTCGGATACCATCGACAACGTCAAGACCAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCAGCAGCGATTAATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACGCTCGCCGACTACAACATCCAGAAGGAGTCTACCCTTCACTTGGTGTTGCGTCTTANGGGAGGGATGCAGATTTTCGTGAAAACCCTAACGGGCAAGACGATCACCTTGGAGGTCGAGAGCTCCGACACAATTGACAACGTTAAGACCAAGGTTCAGGACAAGGAGGGAATTCCTCCTGACCAGCAGCGATTGATATTTGCTGGAAAGCAGCTAGAGGATGGCCGCACGCTCGCCGACTACAACATCCAGAAGGAGTCTACCCTTCACTTGGTGTTGCGTCTTANGGGAGGGATGCAGATTTTCGTGAAAACCCTAACGGGCAAGACGATCACCTTGGANGTCGAGAGCTCCGACACAATTGACAACGTTAAGANCAAGATTCAGGACNAGGAGGGAATTCCTCCTGACCANCAGCGATTGATATTTGCTGGAAGCAGCTAGAGGATGGCCGCACGCTCGCCGACTACAACATCCANAAGAAGTCCACTCTTCT | |||||||||
gi|208384143|gb|DC919657.1|DC919657 DC919657 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp ACGAAGATCTGCATCATAAC EST sequence (targeted fragment marked with yellow): CTCTTGAGCTTTTATCTGTTGCGTGTTTGTAATTCTAAGGGTGTGTCACCATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATTACTCTCGAGGTTGAATCATCAGATACTATCGATAATGTGAAGACGAAAATCCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGAGGCTCATTTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTTGCTGACTACAATATCCAGAAGGAGTCCACTTTGCATTTGGTGCTCCGCCTTCGAGGAGGTATTATTGAGCCTTCGTTGATGGCTCTGGCTCGCAAGTACAATCAGGAGAAGATGATATGTCGGAAGTGCTATGCCCGCCTACACCCCCGAGCCGTCAATTGCAGAAAGAAGAAGTGTGGACATAGCAACCAGCTCCGCCCTAAGAAGAAGATCAAGTAGAGTGGCGGCCTTCTGTATTGGTGCAGTGTGTGCAATGCAAGCTCAGGAAATGTGATAGATCTTCACTGGTCTTTGAGCAGGTTTAAGCTACACGGAGACCAATATAGCTTGTTTAACTGCCTTTGTAATGCGTCACACTGCCCCAC | |||||||||
gi|208399004|gb|DC912163.1|DC912163 DC912163 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp ACGAAGATCTGCATCATAAC EST sequence (targeted fragment marked with yellow): ACTGCTTGGTGGTACTTCTCTCCATTCGGCCTCTTTTTCCGGTTATTGAAGGCGTGTTTCTGTGCTTTAGGATCGGTTTTCCAGTGTCTTGTATACAGAAATTGTAGTAGAGTTTGTGAGAACTTGTTTTAAGATGCAGATTTTTGTGAAGACCCTGACCGGTAAGACCATCACCTTGGAGGTCGAGAGCTCGGATACTATCGATAATGTGAAGACCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGGTTGATCTTCGCCGGTAAGCAGTTGGAGGATGGTCGCACCCTTGCCGATTACAATATTCAGAAGGAGTCGACGTTGCATCTTGTCCTGCGGCTGAGGGGAGGGATGCAAATCTTTGTGAAGACGTTGACGGGCAAGACAATCACGTTGGAGGTCGAGAGCTCGGACACTATCGACAACGTGAAGACAAAGATTCAAGACAAGGAAGGTATTCCTCCCGATCAGCAGCGATTGATCTTCGCTGGGAAGCAGTTGGAGGACGGGCGTACTCTCGCGGATTATAACATCCAGAAGGAGTCGACCTTGCACCTTGTGTTGCGGTTGAGGGGTGGTATGCAAATTTTTGTCAAGACATTGACGGGGAAGACGATAACATTGGAGGTGGAAAGTTCCGATACTATTGATAATGTAAAGACAAAGATACAGGACAAGGAGGGCATCCCTCCCGACCAGCAGAGGCTTATTTTTGCAGGTAAGCANCTGGAAAANGTCGTACTTTGGCTGATATATATCCAAAGGAATCGACTTGCATCTTGTGTGCGGTGAGGGGAGTATGCAATCTTTGTGAAACTTGACGGCCAA | |||||||||
gi|208400087|gb|DC904735.1|DC904735 DC904735 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp ACGAAGATCTGCATCATAAC EST sequence (targeted fragment marked with yellow): ATTCCATTGCACCATTCCTGTTGTCGCAGTGTCTGTGCAGCTCTTCCGGTGTTGCTAGCTAGCTAGCTCTACTCACACTCTGGGTTATTGTTGTGTTTTTTTTAGTGTGTGTGTAACCATCCACTAGTAACCATGGTGAAATTGGCATTCGGCGAGTCTGATGAAGCCTCCAGCCCCGATGCGTTGAAGGGGGCGTTGGCGGAGTTCATCTCCTTGTTCCTGTTTGTGTTCATCGGAGTGGGATCGGTGATGTCCTATGAGAAGATTCACGTCGGTGACTTGGAAGCTGGTGGTCTGCTCATGATCGCCATCGCTCACGGTCTTGCTATTGCGATCCTGGTGGCTGCCACTGCGAACATCAGCGGAGGGCATGTCAACCCCGCTGTTTCTCTCGGTCTTGCTCTTGCCGGAAAGATCACCGTCATTCGCCTCGTCCTTTACTGGGTTGCCCAGCTCTTGGGCGCTGTCGCTGGCGCATGGGTTCTGAAAATGGTCACCACGGGAGAAGACGTCGCCCGCCACGCTATCGGAGTGGGCATGTCTCCCATGTCTGCGGTGCTGATGGAGATCGTGCTCACCTTCACGCTTGTGTTCGTGGTGTTCGCCACCGCAGTGGACCCCAAGAANGGTACCGTGGGAGTGATCGCTCCCTTGGCCATCGGCTTCACCGTTCTGGCTCAGATCTTCGTTGGANCTCCCTT | |||||||||
gi|208390493|gb|DC933750.1|DC933750 DC933750 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. paten ACGAAGATCTGCATCATAAC EST sequence (targeted fragment marked with yellow): ATTCCATTGCACCATTCCTGTTGTCGCAGTGTCTGTGCAGCTCTTCCGGTGTTGCTAGCTAGCTAGCTCTACTCACACTCTGGGTTATTGTTGTGTTTTTTTTAGTGTGTGTGTAACCATCCACTAGTAACCATGGTGAAATTGGCATTCGGCGAGTCTGATGAAGCCTCCAGCCCCGATGCGTTGAAGGGGGCGTTGGCGGAGTTCATCTCCTTGTTCCTGTTTGTGTTCATCGGAGTGGGATCGGTGATGTCCTATGAGAAGATTCACGTCGGTGACTTGGAAGCTGGTGGTCTGCTCATGATCGCCATCGCTCACGGTCTTGCTATTGCGATCCTGGTGGCTGCCACTGCGAACATCAGCGGAGGGCATGTCAACCCCGCTGTTTCTCTCGGTCTTGCTCTTGCCGGAAAGATCACCGTCATTCGCCTCGTCCTTTACTGGGTTGCCCAGCTCTTGGGCGCTGTCGCTGGCGCATGGGTTCTGAAAATGGTCACCACGGGAGAAGACGTCGCCCGCCACGCTATCGGAGTGGGCATGTCTCCCATGTCTGCGGTGCTGATGGAGATCGTGCTCACCTTCACGCTTGTGTTCGTGGTGTTCGCCACCGCAGTGGACCCCAAGAAGGGTACCGTGGGAGTGATCGCTCCCTTGGCCATCGGCTTCACCGTTCTGGCTCAGATCTTCGTTGGANCTCCCTTCTCCGGCGCTTCAATGAANCCTGGACGCTCCTTCGGCCCGCTGTGATCGCCA | |||||||||
gi|208398469|gb|DC916496.1|DC916496 DC916496 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp ACGAAGATCTGCATCATAAC EST sequence (targeted fragment marked with yellow): CTGCCACTGCGAACATCAGCGGAGGGCATGTCAACCCCGCTGTTTCTCTCGGTCTTGCTCTNGCCGGAAAGATCACCGTCATTCGCNTCGTCCTTTACTGGGTTGCCCAGCTCTTGGGCGCTGTCGCTGGCGCATGGGTTCTGAAAATGGTCACCACGGGAGAAGACGTCGCCCGCCACGCTATCGGAGTGGGCATGTCTCCCATGTCTGCGGTGCTGATGGAGATCGTGCTCACCTTCACGCTTGTGTTCGTGGTGTTCGCCACCGCAGTGGACCCCAAGAAGGGTACCGTGGGAGTGATCGCTCCCTTGGCCATNGGCTTCACCGTTCTGGCTCAGATCTTCGTTGGAGCTCCCTTCTCCGGCGCTTCAATGAACCCTGGACGCTCCTTCGGCCCCGCTGTGATCGCCATGGACTTCACCAACCACTGGGTGTACTGGGTTGGTCCCTTCATTGGTGCTGCCCTAGCTGCGGTTATCTACGACGGCGTTTTCATCTCCCCCTCTCCTCCTGCAGGCCACCAAGCCATCCCCAGCGACTTTTAGATCACCACGATGACATATATTCCATCGCACGTTGCAATGGGTCTTNTCCACCTCCAGCCTTCGTGTTTCACTCTTTGTCTGGGAGTGAAAAATGGGAGAGAGAGAGAGAGAGAGAGAGGCAACGTCGTGATCTGGTCAGGTTGCGATTGATCTGTACGAGTAAAGGTTTTTGGTGACAGTGGCGGTGATTGCTCTTGCCGCCGAGGTGTAT | |||||||||
gi|208400077|gb|DC904725.1|DC904725 DC904725 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp ACGAAGATCTGCATCATAAC EST sequence (targeted fragment marked with yellow): ATTGTTGTGTTTTTTTTAGTGTGTGTGTAACCATCCACTAGTAACCATGGTGAAATTGGCATTCGGCGAGTCTGATGAAGCCTCCAGCCCCGATGCGTTGAAGGGGGCGTTGGCGGAGTTCATCTCCTTGTTCCTGTTTGTGTTCATCGGAGTGGGATCGGTGATGTCCTATGAGAAGATTCACGTCGGTGACTTGGAAGCTGGTGGTCTGCTCATGATCGCCATCGCTCACGGTCTTGCTATTGCGATCCTGGTGGCTGCCACTGCGAACATCAGCGGAGGGCATGTCAACCCCGCTGTTTCTCTCGGTCTTGCTCTTGCCGGAAAGATCACCGTCATTCGCCTCGTCCTTTACTGGGTTGCCCAGCTCTTGGGCGCTGTCGCTGGCGCATGGGTTCTGAAAATGGTCACCACGGGAGAAGACGTCGCCCGCCACGCTATCGGAGTGGGCATGTCTCCCATGTCTGCGGTGCTGATGGAGATCGTGCTCACCTTCACGCTTGTGTTCGTGGTGTTCGCCACCGCAGTGGACCCCAAGAAGGGTACCGTGGGAGTGATCGCTCCCTTGGCCATCGGCTTCACCGTTCTGGCTCAGATCTTCGTTGGAGCTCCCTTCTCCGGCGCTTCAATGAACCCTGGACGCTCCTTCGGCCCCGCTGTGATCGCCATGGACTTCACCAACCACTGGGTGTACTGGGTTGGTCCCT | |||||||||
gi|208387728|gb|DC937293.1|DC937293 DC937293 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. paten ACGAAGATCTGCATCATAAC EST sequence (targeted fragment marked with yellow): ATTCCATTGCACCATTCCTGTTGTCGCAGTGTCTGTGCAGCTCTTCCGGTGTTGCTAGCTAGCTAGCTCTACTCACACTCTGGGTTATTGTTGTGTTTTTTTTAGTGTGTGTGTAACCATCCACTAGTAACCATGGTGAAATTGGCATTCGGCGAGTCTGATGAAGCCTCCAGCCCCGATGCGTTGAAGGGGGCGTTGGCGGAGTTCATCTCCTTGTTCCTGTTTGTGTTCATCGGAGTGGGATCGGTGATGTCCTATGAGAAGATTCACGTCGGTGACTTGGAAGCTGGTGGTCTGCTCATGATCGCCATCGCTCACGGTCTTGCTATTGCGATCCTGGTGGCTGCCACTGCGAACATCAGCGGAGGGCATGTCAACCCCGCTGTTTCTCTCGGTCTTGCTCTTGCCGGAAAGATCACCGTCATTCGCCTCGTCCTTTACTGGGTTGCCCAGCTCTTGGGCGCTGTCGCTGGCGCATGGGTTCTGAAAATGGTCACCACGGGAGAAGACGTCGCCCGCCACGCTATCGGAGTGGGCATGTCTCCCATGTCTGCGGTGCTGATGGAGATCGTGCTCACCTTCACGCTTGTGTTCGTGGTGTTCGCCACCGCAGTGGACCCCAAGAAGGGTACCGTGGGAGTGATCGCTCCCTTGGCCATCGGCTTCACCGTTCTGGCTCAGATCTTCGTTGGANCTCCCTTCTCCGGCGCTTCATGAACCTGGACGCTCCTTCGGCCCGCTGTGATCGCNATGGACTCACAACCACTGG | |||||||||
gi|208393463|gb|DC904067.1|DC904067 DC904067 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp ACGAAGATCTGCATCATAAC EST sequence (targeted fragment marked with yellow): CTTTTTGATCTTTCCCTGTGAGTTTTTCGCGTTTTGGAGCGGAGGATTTGTCACCATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTCGAGTCCTCTGATACTATCGACAATGTGAAGACGAAGATCCAGGACAAGGAGGGCATTCCGCCTGACCAGCAGAGGCTGATCTTCGCCGGCAAACAGCTCGAGGATGGCCGAACTCTTGCCGACTACAACATCCAGAAGGAGTCCACCTTGCACTTGGTGCTTCGTCTTCGGGGAGGTATCATCGAGCCCTCTTTGATGGCCCTGGCGCGCAAGTACAACCAGGAAAAAATGATCTGCCGGAAGTGCTATGCCCGCCTACACCCCCGGGCTGTTAACTGCAGAAAGAAGAAATGTGGACACAGCAACCAGCTCCGCCCCAAGAAGAAGATCAAGTAGAGAGGTGACCACATGCCTTGGTGCGTAGGTTGCAGTACAAGCTCAAGTAAAGTGGTAGCCTTTGCTCTTACACTTGTACAGCTTGTTTGCTACAGTTGTAGTGCATCGCATTTTTTCTGTATGAGCATACACGTGATCACGTTTGTGATCGTTATCATTTTGTTGAAAAAAAAAA | |||||||||
gi|208387705|gb|DC937270.1|DC937270 DC937270 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. paten ACGAAGATCTGCATCATAAC EST sequence (targeted fragment marked with yellow): ATTCCATTGCACCATTCCTGTTGTCGCAGTGTCTGTGCAGCTCTTCCGGTGTTGCTAGCTAGCTAGCTCTACTCACACTCTGGGTTATTGTTGTGTTTTTTTTAGTGTGTGTGTAACCATCCACTAGTAACCATGGTGAAATTGGCATTCGGCGAGTCTGATGAAGCCTCCAGCCCCGATGCGTTGAAGGGGGCGTTGGCGGAGTTCATCTCCTTGTTCCTGTTTGTGTTCATCGGAGTGGGATCGGTGATGTCCTATGAGAAGATTCACGTCGGTGACTTGGAAGCTGGTGGTCTGCTCATGATCGCCATCGCTCACGGTCTTGCTATTGCGATCCTGGTGGCTGCCACTGCGAACATCAGCGGAGGGCATGTCAACCCCGCTGTTTCTCTCGGTCTTGCTCTTGCCGGAAAGATCACCGTCATTCGCCTCGTCCTTTACTGGGTTGCCCAGCTCTTGGGCGCTGTCGCTGGCGCATGGGTTCTGAAAATGGTCACCACGGGAGAAGACGTCGCCCGCCACGCTATCGGAGTGGGCATGTCTCCCATGTCTGCGGTGCTGATGGAGATCGTGCTCACCTTCACGCTTGTGTTCGTGGTGTTCGCCACCGCAGTGGACCCCAAGAAGGGTACCGTGGGAGTGATCGCTCCCTTGGCCATCGGCTTCACCGTTCTGGCTCAGATCTTCGTTGGAGCTCCTTCTCCGGCGCTTCATGAACCTGGACGCTCCTTCGGCCCGCTGTGATCGCCATGGA | |||||||||
gi|208395369|gb|DC924451.1|DC924451 DC924451 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp ACGAAGATCTGCATCATAAC EST sequence (targeted fragment marked with yellow): GCCCAGCTCTTGGGCGCTNTCGCTGGCGCATGGGTTNTGAAAATGGTCACCACGGGAGAAGACGTCGCNCGCCACGCTATCGGAGTGGGCATGTCTCCCATGTATGCGGTGCTGATGGAGATCGTGCTCACNTTCACGCTTGTGTTCGTGGTGTTCGCCACCGCAGTGGACNCCAAGAAGGGTACCGTGGGAGTGATCGCTCCCTTGGCCATCGGCTTCACCGTTCTGGCTCAGATCTTCGTTGGAGNTCCCTTCTCCGGCGCTTCAATGAACCCTGGACGCTCCTTCGGCCCCGCTGTGATCGCCATGGACTTCACCAACCACTGGGTGTANTGGGTTGGTCCCTTCATNGGTGCTGCCCTAGCTGCGGTTATNTANGACGGCGTTTTCATCTCCCCCTCTCNTCANGCAGGCCACCAAGCCATCCCCAGCGACTTTTAGATCACCACGATGACATATATTCCATCGCACGTTGCAATGGGTCTTCTCCACCTCCAGCNNTCGTGTTTCACTCTTTGTCTGGGAGTGAAAAATGGGAGAGAGAGAGAGAGAGAGAGAGGCAACGTCGTGATCTGGTCAGGTTGCGATTGATCTGTACGAGTAAAGGTTTTTGGTGACCAGTGGCGGTGATTGCTCCTTGCCGACGCGAGGTGTATGT | |||||||||