| mature miRNA: ACGAAGGTCTGCATCATAGC species: Physcomitrella patens database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|208389835|gb|DC938355.1|DC938355 DC938355 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. paten ACGAAGGTCTGCATCATAGC EST sequence (targeted fragment marked with yellow): GGATTGTGCGCTTCTAGATACTGAATTTGTTTCGACCCTGCCTTGTTGAGTGGCCGTAGAGGCTCGACAGTTAGGATCAGTGTGCCGTTGAATTTAGTGATCGTGTAGCGACCAGTACGTCCTGTAAGGATGCAGATCTTCGTGAAAACTCTGACGGGGAAGACAATTACCTTGGAGGTCGAGAGCTCGGATACCATCGACAACGTCAAGACCAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCAGCAGCGATTAATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACGCTCGCCGACTACAACATCCAGAAGGAGTCTACCCTTCACTTGGTGTTGCGTCTTAGGGGAGGGATGCAGATTTTCGTGAAAACCCTAACGGGCAAGACGATCACCTTGGAGGTCGAGAGCTCCGACACAATTGACAACGTTAAGACCAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCAGCAGCGATTGATATTTGCTGGAAAGCAGCTAGAGGATGGCCGCACGCTCGCCGACTACAACATCCAGAAGGAGTCTACCCTTCACTTGGTGTTGCGTCTTAGGGGAGGGATGCAGATTTTCGTGAAAACCCTAACGGGCAAGACGATCACCTTGGAGGTCGAGAGCTCCGACACAATTGACAACGTTAAGACCAAGATTCAGGACAAGGAGGGAATTCCTCCTGACNAGCAGCGATNGATATTTGCTGGAAAGCAGCTAGAGGATGGCCGCACGCTCGCCGACTACAACATCCANAAGGAGTCCACTCTTC | |||||||||
gi|208400643|gb|DC904843.1|DC904843 DC904843 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp ACGAAGGTCTGCATCATAGC EST sequence (targeted fragment marked with yellow): GATTGTGCGCTTCTAGATACTGAATTTGTTTCGACCCTGCCTTGTTGAGTGGCCGTAGAGGCTCGACAGTTAGGATCAGTGTGCCGTTGAATTTAGTGATTGTGTAGCGACCAGTACGTCCTGTAAGGATGCAGATCTTCGTGAAAACTCTGACGGGGAAGACAATTACCTTGGAGGTCGAGAGCTCGGATACCATCGACAACGTCAAGACCAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCAGCAGCGATTAATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACGCTCGCCGACTACAACATCCAGAAGGAGTCTACCCTTCACTTGGTGTTGCGTCTTANGGGAGGGATGCAGATTTTCGTGAAAACCCTAACGGGCAAGACGATCACCTTGGAGGTCGAGAGCTCCGACACAATTGACAACGTTAAGACCAAGGTTCAGGACAAGGAGGGAATTCCTCCTGACCAGCAGCGATTGATATTTGCTGGAAAGCAGCTAGAGGATGGCCGCACGCTCGCCGACTACAACATCCAGAAGGAGTCTACCCTTCACTTGGTGTTGCGTCTTANGGGAGGGATGCAGATTTTCGTGAAAACCCTAACGGGCAAGACGATCACCTTGGANGTCGAGAGCTCCGACACAATTGACAACGTTAAGANCAAGATTCAGGACNAGGAGGGAATTCCTCCTGACCANCAGCGATTGATATTTGCTGGAAGCAGCTAGAGGATGGCCGCACGCTCGCCGACTACAACATCCANAAGAAGTCCACTCTTCT | |||||||||