| mature miRNA: ACGAGAGTCATCTGTGACAGG species: Solanum lycopersicum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|225412686|gb|FS193961.1|FS193961 FS193961 Solanum lycopersicum cv Micro-Tom root Solanum lycopersicum cDNA clone LEFL3101C19 ACGAGAGTCATCTGTGACAGG EST sequence (targeted fragment marked with yellow): TCTCGCCGGAAATAGATCTCCTTCTCACGAATTCCGAGCTCTTTCTCCTGACTNNNNCAGTCCATGTTTCTATAACGGCATAAGCAGAAACAAGGCTGGTGCATTACAATCATTGTTAAGGAATGAATACAGACGTTGAGCTAAATTTTCACCTCGTAACTGCACAGATCTCCTGGATCCGAGTTTATTGATTTTTGGATTTGAGAGACTTACATTGTAATATAGGGAGGTGGAGCCATTTGAATCACCAAGTGACTTACAATGATGATCAGCAAAGAGCTTTTATTGACTTACGTTTATCTCCTTGTCTATATCGTGCTTTCATCAGGAGTTATTTTGTATAACAAGTGGGTGCTTTCACCAAAATATTTCAATTTCCCACTCCCAATTACACTTACCATGATACATATGGGCTTTTCAGGCTTAGTGGCTTTCTTTCTTGTCCGTGTCTTCAAGGTGGTGTCACCTGTCAAGATGACTCTTGAAATATATGCAACGTGCGTTATTCCAATCAGTGCTTTCTTTGCTGCAAGTCTTTGGTTTGGCAACACCGCATATTTGTTCATTTCA | |||||||||
gi|117684494|gb|DB679981.1|DB679981 DB679981 Solanum lycopersicum cv. Micro-Tom leaf Solanum lycopersicum cDNA clone LEFL1005DD1 ACGAGAGTCATCTGTGACAGG EST sequence (targeted fragment marked with yellow): GGGCTAACCAATCGACAGAATTAAATCAACAAAATCAGATCGAACCGTCGGCATCTCGCCGGAAATAGATCTCCTTCTCACGAATTCCGAGCTCTTTCTCCTGACTTTATCAGTCCATGTTTCTATAACGGCATAAGCAGAAACAAGGCTGGTGCATTACAATCATTGTTAAGGAATGAATACAGACGTTGAGCTAAATTTTCACCTCGTAACTGCACAGATCTCCTGGATCCGAGTTTATTGATTTTTGGATTTGAGAGACTTACATTGTAATATAGGGAGGTGGAGCCATTTGAATCACCAAGTGACTTACAATGATGATCAGCAAAGAGCTTTTATTGACTTACGTTTATCTCCTTGTCTATATCGTGCTTTCATCAGGAGTTATTTTGTATAACAAGGTGGTGTCACCTGTCAAGATGACTCTTGAAATATATGCAACGTGCGTTATTCCAATCAGTGCTTTCTTTGCTGCAAGTCTTTGGTTTGGCAACACCGCATATTTGTTCATTTCAGTGGCCTTCATCCAGATGCTCAAAGCTCTGATGCCGGTGGCCACATTTGTCATGGCTGTTATTTGTGGAACTGACAAACTAAGATGCGATGTATTCTTGAACATGTTTTTGGTCAGTGTTGGTGTTGTAATATCCTCCT | |||||||||