| mature miRNA: ACTACCTCCGTCCCATAATAA species: Artemisia annua database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|159738671|gb|EY059174.1|EY059174 CATF11453.fwd CATF Artemisia annua, Tanzanian, from Sandeman Seeds, 1-2kb Artemisia annua cD ACTACCTCCGTCCCATAATAA EST sequence (targeted fragment marked with yellow): ACATCGTTCTTGTGGTTCGGCCAAATTGCAGATTCGTCCTTATGGTTTTGAAATTACCCGGACAAAAAAACTACATAATACACAGTTTAAGAAACTTAAGTTTTGCAAAATGATAGTTTACTTATAACCATTTATTCAATGTTTTGTTTGAGCTTTGTAGTTTTACATTTATACAAGGATATTTTGGTAACTTGATCTATGCTGCCGATTCATTTTTGGCGCTGGACAATTATTTGGGACGGAGGGAGTGTTGTTGTACATTTGTTCATTTATAAGAGTTGAGAAGCCACACATAGGGTTGAGATTAGTTGGAAGCTGTCGTTTATAGATATGACGATCTGGGTTTTATAGGAAATGTATGACCCGTTTGATGTGTATCTAAAACTAATATGAACAGAATTTTACCTGAGTATGGTTCAATGTCTTGCATAGAGTTATGTTCATTTATAAGCACCTATACATACTGAGCTTTTAATGAACATATCAACAAGATCACCACTCATCGCTCTTATCTGCTAGAAATGTACTTGTGATGAAAACATACTCTCCATAAGCTCTATTGGAAATTTATGAGCTNCAAACCGCAATGTGTCTGCCTTCATCTGGCTGAATGTGACAGGCCG | |||||||||
gi|159640517|gb|EY047356.1|EY047356 CATA586.fwd CATA Artemisia annua, Tanzanian, from Sandeman Seeds, 0.8-1.5Kb Artemisia annua ACTACCTCCGTCCCATAATAA EST sequence (targeted fragment marked with yellow): ATAGAATACTTGACGAAAAATTATACCATTGAAAAGTACACTTAAAACCCAATTCATTTATATATTTTTCATCAACTATTATATAACACTTACAAAACTAGTTAAGGTCAAAGTGGAACCAGTTTGACTCTGAAAAGTCAAACTGGACACTTATTTTGAGACGGAGGGAGTACATGTCTTTTTCGATGTGGGACACTGATTCAGCCCAACATTAAACTTACCACTTTCTAATATGTTAAAAGAAGTGATTTCACGTTAACATGTATAACTACAAAATATAACTACAACTAATACTCCTATATGTATATGAGGATTATGAGCTGATCACATCTTTAGAAAGAACAAAAAGCAAGGCTTATGGAGGTTAGAGTGGCATATATCTAGAGATTTTATCCATTTTTTTTGAAATGTCATTCACTAAGAATCATTCACGAGCTACTAGTATTATGTAAGAAATATTAAACTTTTAACCACAACCCTTAAAGGTGTCATTATTAGAACCTTATGTTACAAATGTATAGACTCGCCTTCTCTAGAAAACATGAATAATAAAAAAAACCCAATCTATTATTTTTTATGTTACGAAGGTATGAGCTAAATTGTCAAATGAGGTGGAATTCGCTGATGGTATACTGTGTCGATACATTAAAGATAAACTTTTTATTGTCATAGTAATATAAATTTTGTAAAATGCAAACATATAATTATTTGTAAAG | |||||||||
gi|159747753|gb|EY059305.1|EY059305 CATF11518.fwd CATF Artemisia annua, Tanzanian, from Sandeman Seeds, 1-2kb Artemisia annua cD ACTACCTCCGTCCCATAATAA EST sequence (targeted fragment marked with yellow): CAAACTGGTTCAACTTTGACCTTAACTATTTTTGTGGGTGTGATATAATAGTTGATGAAAAATATGTAAATAGATTGTGTTTTAAGTGTACTTTTCAATGGTATAATTTTTCGTCAAGTATTCTATACCACATAAAAAATATTTAAGGTCAAAGTTGAACCAGTTTGACTCTGAAAAGTCAAATTGGACACTTATTTTGGGACGGAGGGAGTATTATTTATCAACTTCGGAAAACGGGCCGTTGATAAATGTACTATAAAGACAACTAGTGAAGAATAATAAAACATTACTCATGGGAAATCGATCCTCCTAGAAAAAAAAATAATTAATCGAGACAGCCGTCACTTTCATTCCCGCAAAAAGTTCTGGTCGTTTCTTATTAATTCTCACAGATTGTTGTTTGTATTCATTAACCCAATATAATTACTCCACCTCATCCAATAAAGCCCATGCAACTCATGCAAATAATATATTGAATGTGCACCTTGTTTACACGATCTACAAACAATAAAATCAAACCCTTCAACATCTCNNAAAAAAAAAAAAAAAANAAAAAAA | |||||||||
gi|159663484|gb|EY052315.1|EY052315 CATC3671.fwd CATC Artemisia annua, Tanzanian, from Sandeman Seeds, 0.5-1kb Artemisia annua c ACTACCTCCGTCCCATAATAA EST sequence (targeted fragment marked with yellow): TTGTGGGTGTTATATAATATTTGATGCAAAATATATAAATGGGTTGAGTTTTAAGTCTACTTTTCAATGGTATAATTTCTCATCAAGTATTATATAATAAAATATATATATTTTTGGTCAAAGTTAAACCACTTTGACTTTGAAAATTCAAAGTGGACAATAATTTTGGGACGGAGGGAGTACAAGTTATGATTTGTTAAAAAGTGTATGGTCGTAAACTTGACTTCTGTAAGCCAACTAAGTTTGTTTGTGATTTAAGTTCATGCGCATATTCATGTTCAGAGCATCTCCAATGATATGGACTTTATCAATTCCATACCGTTGACCACCATTTTTTATCTTTACCCAATGTTTCCTTTATATCTTTATGTAGATGTGTTGGAATGGGCTGGTCGGGTAACATGTCAAATGCGGTTAGCGCAAAATTGGTACATTCTGATATAGTTTGAAACAGGTTGGATCAGGTTGACGGTTGACTCAAGGCGCTTTCTGGAAAAAAAAAA | |||||||||
gi|159753638|gb|EY053295.1|EY053295 CATC4227.fwd CATC Artemisia annua, Tanzanian, from Sandeman Seeds, 0.5-1kb Artemisia annua c ACTACCTCCGTCCCATAATAA EST sequence (targeted fragment marked with yellow): CAATGAGATGAGACTTTAGTGGGTAAAAATGATATTTGATTGGTGGAGAGTGTAGTTAGTGGAATTTTCTAAAACTTTGTGCATGATGAAAGCGGACACTTAATATGGGACGGAGGGAGTAAAATCTTAAAAGCTTCAAAAAAAAAGGCGCCACGCCTTGCGCTATAGCGCGCTTTATCACGCCTTATCACGCTTTATTGCACGCTACGCCAAAGGATGACGCCTTGGCCTGTTTCGTAACGTGGATGCCATGCCTTACGCTATGGCGCGACTATAACGCGCTATTTAGAACCCTGGTTAAGACACCTCCTCCTCTCCATCTAGTTCAATAAAAGGCAAGGTTGTAAAAATCGCGAATCGGTAGTCGGGCGGTCGACCACCTTGTAGATTGTAATCGGTCTAGGCGGGATTAATCGGTGATTAATCGAATTGGCATTTTTGAAAATTTTTGGGTATTTCCGCCAAGTTTTGTGTATTTCTGGCGAGTTTTATGTATTTCCGGCAAGATTTTTTATAAAAGACGACTTGTAATAGATTAAAACGGTTACTATAAGTGATCAAAATATGTTTACGGTGAGTTTTGCGTACTTCTGGCAAGATTTGTGGGTTTCCGGCAAGTTTGACTATCATTGACCGCCGTTGACTAAAGTTGACCTATTTGTTTGACCCAGTTGCAT | |||||||||
gi|159629559|gb|EY071564.1|EY071564 CATG458.fwd CATG Artemisia annua, Tanzanian, from Sandeman Seeds, 2+kb Artemisia annua cDNA ACTACCTCCGTCCCATAATAA EST sequence (targeted fragment marked with yellow): ATAATTGCTGTCTCCTAATAACATCCAAATTATTTTTAAGAAAAGCCTTGTTGGGATGATCAAGTCACAGAATATGATGAAAATATAATAAAAGGCCAAAGTATAATAGTGGAGTACATTTTAGTATCTAAAATTAAACCTTTAATGCAAATCAAATTTGAATTAATCAAGCGGTACCTTTTGTAAGAACATCCAGTTCCCCCGTGTTCTGATGCTCGTGAACCTATAATAGAAATAAATTAAAGACGAGATGATCCAATAAACTCTGAATTAACTTAAAACTAGTGAAAAAGCTATTAGTATCCCACACCTCAAGACTTTTTTTTATCTGTGTGTAGCTCTTATGATGACAAAGTTTTCAACAAGATAATACTAAAATACTCCCTCCGTCCCTAAATAAGTGTCCACATTTGACTTTTGAAGTCTTACTTATTCAACTTTGACCTTAAATATTATTGTTTATTTTATATAATACTTGATGCAAAATATATGAATGAATTGAGTTTTATGTGTATTTTAATTTGGTATAATTTTTATCAAGTGTTATATAACATAACTAAAAATATTTAAGGTCAAAGATTCAAAAAAAGACTTCAAAAGTCAAACGTGGACATTTATTTAGGGACGGAGGGAGTAACTCATTTTACACGAAGACAAGTTTTCAACACGGTTATTAATTTCCTTGTCACTGTGTTA | |||||||||
gi|159651172|gb|EY066723.1|EY066723 CATF948.fwd CATF Artemisia annua, Tanzanian, from Sandeman Seeds, 1-2kb Artemisia annua cDNA ACTACCTCCGTCCCATAATAA EST sequence (targeted fragment marked with yellow): AACCAAACGCCCACATAGACTGCTGAGCTTAAACTATAAGCCATGCATTTCACTCAGTGAGTAAACGAGCTGGTCCAAGATCGTGCTTCTTTCACATACCTAAATTTCATTTCGAATGTAACGACACAATATGCACATCCAAAAAACAGAACAGAAACAGGGGATGCTTTAATAATATACAGTTTGTGACTTTGTTCTTTCGAAGACTCTAGATTTACCATAGGCATCTGGCACACTTTCTTCCATATTTCTTAAGCAAGTTCGAATTTGAATATCATATGCTCTTATTTTTTAGGCTCGTCATCGCATAATGAACATAAAACTGAGTTAACATATCTTTGCCTATGTACTCGATGTTGACATGGCCTGGTACATGATTTCACCAATTCTTCCAAGAGAGTATATTGAGTTCCTTGAAACCAACTTATTCCCTCTAGTAATAATCATGATTACTACTCCCTCCGTCCCAAAATAAATGTCCAGTTTGACTTTTCCGAGTCAAACTGGTTCAACTTTGACCTTTAATATTTTCTTTGTGTTATATACTGTAATACTTAATGAAAAATTATACCAACAAAAAATACACTTAAAACCCAATTCATTCATATATTTTGCATTAAGTATTATATAACACCCGCAAAAATAAATAAAGTAAAAGTTGAACCAGTTTGACTCAGAAAAGTCAAACTAGACATTTATTTTGNGACGGAGGGAGTATTACTATTATTACTATAATTTTAGTTGTTGTTATCCTTT | |||||||||
gi|159715326|gb|EY065550.1|EY065550 CATF8886.fwd CATF Artemisia annua, Tanzanian, from Sandeman Seeds, 1-2kb Artemisia annua cDN ACTACCTCCGTCCCATAATAA EST sequence (targeted fragment marked with yellow): TTAGATATATTTCTAAGGGTCAAAGGGGTTAAGTTAATGATTTAACTACAAAACAAGGCACTCTTTGTAATCATATTAAACAAGATACTATTTGTAATCTCAATAAACATGCTAATAGAATTATAAAATATATGTAAAATGTGGATAGCCTACTCGTTTTTAACAGCAAAAGAAAGCACCAGTTTGACCCATTACAGAACCCACCCAAACCACCTAATTTGTCACCTCCAAGCAGAACAAAGCACTGGAAATAAACATACCCTGTATTTGCCCATTCTCCAACCCAGCCGAATCCATGATGAGCTCTGCATTGATCCAAATTGTGTATAACAAAGAGCAATATTGTCAGTAGTAATAAATAGTACTCCCTCCGTCCCATACAAAAATATTTATGGTCAAAGTTGAAAAAGAAAGACTTTAAAAAGTCAAACAGGACATTTAATATGGGACGGAGGGAGTAAAAGTGTAAAACATATGCACAAAACTAGAAGTCAACTAATTTGTTATTTTCGAACAGTTTCATAAGTTAAGGAAATGTTTGGACGAGTATGTAAACTGATTATTATCGTCACTCCAAGCCGTAGTATTCAAAATACAGTGTCTGGAAAACCTGATTGTTAGAATGTAAGTAGTTACTGCAAGAAGTGTGAGCATCGCANAAAACTTAAAATTATCTTACTAGTGAAAAAATCACTGATTTTGATCACTTTTGAGATGGACATCCAAATTTCCCATTTCATTTGTGAAACTCTGGACACATACTATTGCTGCTATTGGAACAAATGACACAATCAGATCATGTGCTCTGGAAAAAAAAAGTCAAG | |||||||||
gi|159752947|gb|EY053269.1|EY053269 CATC4212.fwd CATC Artemisia annua, Tanzanian, from Sandeman Seeds, 0.5-1kb Artemisia annua c ACTACCTCCGTCCCATAATAA EST sequence (targeted fragment marked with yellow): ATGTTCATGGATAAATATTACTCCGTTTTTCATAATATAAGCGTCCGCATTACTACCTCTGGCCCACATTAAGTGTCCACTTTTACTTTTCAAAGTCTTTTTCCTTTAACTTTAACCTTAAATATATTTGTTTGTGTTATATAAAAATTAATGAAAATTATACAAATAAAAATACATTTAAAAACTTCATCCATCCATATATCTTGCATCAAGTATTACATAACACGAACAAAAAAATTTAAAGTCAAAGTTGAAGACAAAAGACTTAAAAAAGTCATAGTGGACACTTAATGTGGGACGGAGGGAGTATTATTTTAAGATATTTTAAAATAAATGAAACTGTAGTTAGTAAAATTTTATGTTTTCTGAAAAATAAACGCTAGTTATGAGATGAAAGGAGTAATATATTTTTGTCAAAAGTACAAAAACGTTTAAGTGTGGTGTGATTTGTATGTGAAAGAAGATACTTCTTGTGCCACAGTGCAAAATTAAAGGATGTTTGAATTAACTTACTTCAACGGTTTACAGGGTTATTAGGTTTGTCAGAAATAAAATTTGCTTTGACCCGAAACCCCCTTGAAATGACACGCTGGCTGATGACATCAAAATTTTATCTCATTCTTAGATTTCTAGTAGA | |||||||||
gi|283966518|gb|GW331473.1|GW331473 AAGST_UP_016_D09_25AUG2004_073 AAGST Artemisia annua cDNA, mRNA sequence ACTACCTCCGTCCCATAATAA EST sequence (targeted fragment marked with yellow): TATAATATATTGTATTATATTATAGTAATATAATATAATACTCCATCCATCCTAAAATAAGTGTCCAGTTTAATTTTTCATAGTCAAATTGGTTCCAGTTTTACCTTAAATATTTTTTCTATGGTAAGTAATACTTGACGAAAAATTATATAACACCCACAAAAATAGTTAAGGTCAAAGTTGAACTAGTTTGACTCTAAAAAGTTAAACTGGACACTTATTTTGAGACGGAGGGAGTACATTGTAATATATTACAATATAATATAAAATAATATAATATATTTTATTATACTATTTTATAATCAATATCAATTTTATGATTAAGTAATTCTCTTTAATAAAATTTGGTTTAAGTGGGTAATGCTTTGTTTAGAGCGCTGGATACAGTTGATGCCATGGGTGATGCCATTGGTGGTGCTGTGAAAAAAGTGATGCCACCTCAGCACTTTTTTTTTCATGCCATCAGATTTCTCTATGGCACCAAAACAACCCCTCCCTAGCTA | |||||||||
gi|159639821|gb|EY115537.1|EY115537 CAZI942.fwd CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI942 ACTACCTCCGTCCCATAATAA EST sequence (targeted fragment marked with yellow): TTTGTGTGTGATATATAATATTTGATGCACAATATATGAATAGATTGGGTTTTAAATGTATTTTCATTGATATAATTTTCATCAAGTATTATATAACACAAACAAAAATATTTAACGTCAAAATTGAAAAAGAAAGACTTCAAAAGTCAAACGTGGACATTTATTTAGGGACGGAGGGAGTATTTATTAGTACTGTTTATCTTGTTCTCTGTTTGCTTATTAGTCTCTTAAATCTTTTTCGGGAGCAAAGATGGCAAATTATTTCACGGCTTATAGGATAGATCACATATTGGGTTTCTTTAGAATTTGGGAGCTTCCGGAACATGCCATGACAGGTTTAGTTGGGAAATTCCGTCCATCTATACCACTTAGCCAGGAAGAACTTGAAAAAGAGGGGATATGGGATTTTGATCGATTGAGCAAACCGTACATTCTTCAGGAGCATTTACAGGAAATATTTGGACCGTCATGGATAGTTGTGGCTTCTCATTTCATGAATGAGATTGAGAAAAATCGTTATCAGTTCAAAGACGACTGTAATACAGAGAAAAAGATTGCTGCCAAGCTGAAATCGCTTATTGAGAAGTCATTGTTGTTGGAAAGTGAAGACAAATTAAGGCGTGGTCTCTTTGATCTTGTGCAGAATATAGTGCTTATTAGAGACCCTGAGGATGCTAGAAGCTTTTATCCTCGCTTTAACCTAGAAGATACATCTAGTTTCAAGGATTTGGATGATAACAGCAAANATGTTCTTAGAAGATTGTATTATGACTACTATTTCCAGCGACAAGAAACTCTTTGGCGCCAAAATGCCATGAAGACTTTACCTGCTCTGCTAAACTCGTC | |||||||||
gi|159631284|gb|EY057565.1|EY057565 CATF10618.fwd CATF Artemisia annua, Tanzanian, from Sandeman Seeds, 1-2kb Artemisia annua cD ACTACCTCCGTCCCATAATAA EST sequence (targeted fragment marked with yellow): TATATTTATGGTCAATGTTGAACCAGTTTGACTTTGAAAATTCAAACTGGACAATAATTTTGGGACGGAGGGAGTAACAACCAAGATCTGTGGGGTCTTAATGGTGGACTACGTTTTTTAGTGGGGTCTAGTGTACACTGTACAAGGGTCTCGTACATCAGATGGTGGTCTTGTTTTTTTTTGTTAATGTACTAGATGTATCATTGTTGTTGTTGTACTAGATGTATCATTATATGTACATAATATATAATGTCAATGTAAATACATTTTTAATGTACGTGATGCCATGTATCATTACATTTACATGGTGGTCTATCGTGTACGAGTATTTGTTAATGTAAATATAAATAAATTTTTTAATCTGCCTAATGTATCAGTAGACGTACATGGTGGTCTCGTGTATTTGTTAATTTAAATATATTTTTAATGTACTTGATGTATCAGGTTATTTTTAAAAAAGGTGCACCTGTATAAAAATAAAAGCAA | |||||||||
gi|159632149|gb|EY069305.1|EY069305 CATG2270.rev CATG Artemisia annua, Tanzanian, from Sandeman Seeds, 2+kb Artemisia annua cDNA ACTACCTCCGTCCCATAATAA EST sequence (targeted fragment marked with yellow): TTTCATATCACAGTAACTCATGCTTACCATTTGATATTTATATTCCCGTTACTAATAATTTAGCCGTATTTAATATTCAAACCCGTGTATGCATAAATTAAACTTTTAGATAGAATAACATGAGTCCTTATTTAAAAAAATATTCTAATGGATGAAAGTCTACAACTAACACTATTAAAACTAATTCGCATATTTACAAAATTTTCTAATTTAAATAGATGAAAGTCTGAAACTAATACTAATACTCATGTCATTTTAAATAAAGTTCATATTATAAAGTATAAGGGGTATAAAGTGTAAGGGTTTATTTGTGTTTTTTTTAAGTTATTAAAAAACATGGAAACTTGTAATTTTACAATTAGCTCAATATATTTTATGTAAAATTCAACCACTAAAGTTTTATTAATTACTTTCTCTTTTTTTTAATTTTTTATTTTCATAAATTTGACACCTATATTTTTATGCATTTTTTTTTTCTTAACCAAATTTATCCACCAAATTTATTAAGTTTGACTAAAACCAATTCAATTTTGACTTTCTATTGACCAATCATATTGCTCGATTTCGTCTACGTGGCAAAATCGAGCTCTCCTATTGGTCTAATTTTTTTTTTTCAATGAGAAAGGTTTTGCAAAAACACTTCGAAATGATGTAATTCTTTTATTATATAAAAGATATAAAAAAAATAATAATATTTACACTTATTATGGGACGGAGGGAGTACTTCAATATTATTATACATTAAATGGAAAGCATGCATATGCTACGCCG | |||||||||
gi|159669862|gb|EY070972.1|EY070972 CATG3478.fwd CATG Artemisia annua, Tanzanian, from Sandeman Seeds, 2+kb Artemisia annua cDNA ACTACCTCCGTCCCATAATAA EST sequence (targeted fragment marked with yellow): TTCCCTATTGACTTTTTTGGTCTTCTTTTCTCAACTTTGACTATAAATATTTTTGTTTGTGTTATACAATTTTTGATAAAAATTATACCAAATGAAAATACATTTAAAACTCAAACCGTTCATATATTTTATATCAAGTATTATGTGATATAAATAAAAATGCTTAAGGTCAAAGTTAAAAAGTAAAGACCGAAAAAGTCAATAGAGGACAATAATTTTGGGACGGAGGTAGTAGCATTTAAATCATATAAGAAGTCATCAAATAGCACGCAAAAGTCAAGGTCAAATGATATGACCTCATGGATCGATAAGTCATCGCATAAATGGTCGTCGGCTTATTAAATTCGTCAACTCAATAAGTCCAACCATTTGTCGATTTACTTATTACCCCTTTAAGTTATATCATTAGTCGTAGGATGCACTTTTCGTCAACATAACCACTTAATATCCTTATCGGGCTCCTATCGGGCTCGTCAGTCCAATAGGTCCAACAACAATATTAATGGCCCGTTATCGATAAATAAATCCGTAACTTACTCAAAATAAGGTCANATATTCGTTACAAAAGAAATAATAAGCCTTGGACTTGTATAGCGTGTGCTCGAATATTTAATAATTCACTTCGAACATCACAATTCGTTTTGAACCCGTAAGGATCCATTTTTCNAAGACTTTCCGTTATTAACTCGTGATATGGATTCGTTATATATTTATT | |||||||||