| mature miRNA: ACTAGTACTCCCTCCGTCCCG species: Leymus cinereus x Leymus triticoides database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|159746094|gb|EG391205.1|EG391205 BG01027B1F11.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG ACTAGTACTCCCTCCGTCCCG EST sequence (targeted fragment marked with yellow): CGATTTTTTTTTTTTTTTTTTGGCAGAATCCCTTTGCATATACATACATACGTACTCCCTCCGTCCGGAAATACATGTCGAAGAAATGAATAAAAATAAATGTATCTAGAACTAAAATACATCTAGATACATTCATTCCTCTGACAAGTATTTCCGGACGGAGGGAGTATTAGTTTACTACATACATCACACACACGAACTATATATTCAATTCAGATCTCTCATCCAAGATCGGGAACGATGAGGTAGTCATCGTCGTCGTCGGGCAGCTCCACCCTCGCCTTCTTGCTCTGGCGCGCACCGGCTGTCTTGTAGTTGTAGAAGCCGGCGTTGCTCGCCGGCTGCGGCGAGGCGAAGAGCTCGGGGACCTCCGCCTGGTCGTGGTGGAACTGGAACAGGTCGATGTCGGCGAACCACTCGAGCTCCTTGGACCCGAGAGGAGACGGAGAACCCTTCTGCAACAGCAAACAGAAACGCAAACGCATGGAGACACGGTGAGATGTATCCATGGTGATCGCACGGATAGTAGTACGTGATTTGCCTAGCTCCTTGCCTTGTCGCTGGATTCGTAGTCGGAGAACTGCAGGAGGTCCTCGACGGCCCAGCCGAACGACGGCACCTCCTGCGCCGCGGCCGATACCGGCGCCACCCTGGGGACGACGGCGGTCGGCGGCTTGGACTTGGNNNGCGGCGGCGGCGGGTGGCTGTCGGCGTGGGCGCTGC | |||||||||
gi|159583987|gb|EG382183.1|EG382183 BG01005A1G05.f1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG ACTAGTACTCCCTCCGTCCCG EST sequence (targeted fragment marked with yellow): CTAACAATCACGCCACTTATTTGGAACGGAGGGAGTAGTAGATTGTTAGTGTCGGTTCCCAGGCATATACAAATTACATAGAAACAACATTGCCCACAAACTCCAAACGACGGTCTTCCATTTGGTTGCCTTGGATAATCTTATTTCAATCACCAGGCAGGCAAGGCTGCGGATGAACTTATATGACTATCTATCAATTAATAGCACATATATCCATCCCAATGGATTTCGTCTGGCCAAGCTAATGTCACGACTCAGACATTAGGCTTGCTGAATACCACTGGCCCAGGTCATGTTTTTAACAGGCTCTAGAATTGCTTCGACTTCGTGCAAAAGTTCTTCATCTATGCTTGAAGTCGACAACTCCACTGCAGCAGCAACATTCTCCTCCACCTGTTCTGGAGAGTTCATTCCAACAAGAACTGTAGAAATTTCATTGTTCATCAAGCTATACTTCATGGCTAGCTTTGTAATATGTTTCCCCTTCTTTCTACAGTGATCTGCGACGGCCCTGCATGCCAGCTTGAGTTCTTCTGGCGCAGGGTGCCACTCAGGTGGCCCATTATCCGTGAGAAGCCCCATAGCAAGGGGCGAAGCACTGATCACGCCAACACCTTTGCTCTTCAAGTACGGTAGCAAATCTACCAGCGCAGTATCATTGATTCCGTAGTGGCAGTAGGACAGAATCAAATCTACTGAGCCGAGAGGCACCCGGTCAAGCACGTAGGTGAAGATGCTCAACGGCAATCCAGTAATTCCAATGAATCGCGCCTTCCCACTCTCCTTGATCTTTT | |||||||||
gi|159641007|gb|EG384554.1|EG384554 BG01019A1E12.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG ACTAGTACTCCCTCCGTCCCG EST sequence (targeted fragment marked with yellow): GCATTTTTTTTTTTTTTTTTTAATTAATTTCCTTCTCTTTATTCATGACAGACGATATATCACCGCCTGCAATATGGTTGAAAGTTGCACTCTTGCATGGATCGATGTTATGTTGTATACATGCATTCACGTTACACCTCACTGCTGCATTACGTACGTGTAGCTTATTTAGGCTGATCGACGTGTACTCCCTACTTATGTACTCTCTCCGTCCGGAAATACTTGTCAGAGAAATGGATGTATCTAGACGTATTTTAGTTCTAGATACATTCATTTTTATTCATTTCTGCGACAAGTAATTCCGGACGGAGGGAGTACTAGTAATCCACATTACACTTCTTCACTCCTGCACTATACGCAGCTTATTCAGGTTGACGACGCACGAGTACACGTACGTACGTATGCATGGACGACGATGCAGCCAGCCAGACTACTGGAACCGGATGGGGTACGCCGGCGACTTGTCCGGGTTGAACAGCCCGAAGTGCTTCTCGGTGAGGTCCCCGGTCTTGAAGTTCTCGTTGAACATGGCGAAGATGTACGTCTCCAGCGCGCCGGGCCTCTTGGGCGTGCCCCCACCAACATGATCAATCAGCCCCTGATTGTATGCCCTCGCGTTGTCCGCCGTCGCCGCGAACCCGCTGGCCGACGGCCACCCGCTCTCCGACACCACCACCCTCACCCCCGGCGCGCCGGCCCGCTCCAGCGCCGCGACCACGGCGTCCACCATGGCATCGAACAGGCACGTGTAGGTCAGCTCGTTGTTGGGG | |||||||||
gi|159748630|gb|EG391246.1|EG391246 BG01028B2B06.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG ACTAGTACTCCCTCCGTCCCG EST sequence (targeted fragment marked with yellow): GCATTTTTTTTTTTTTTTTTTGGCAATAACAATTTTATCTTAGCAGTTGCAGCTTGTACAAGTAATCACAGGACAGGGCATCTGGCGCTAAAATAATTACCCGGCATAGTCGTCCCATTCAAATAACTGGAGATGAGATCCTACAAGGAAAATATTTGAGCGACAAGGTTTCAATCGGAGCCATAGTTCGTACTCCCTCCGTTCCATAATATAAGAACGTTTTTCAAGCTAACAAGCTTACAAAAATGCTCTTATATTATGGGACGGAGGGAGTACTTGGTTGTTGGCCATGTCAACTGCAAGAACCCATGCCTTTGGGTGCAGGAATTTGACCGTGATGATCAGGTAAACAACAGTTCCGCTCTGCAGCCTCACCGTTCAGGTTGAGAACAGGCTGACATGTCCAGAGATTCTGCAAGTTCCGCTCTGCAGCCTCACCGTTCTTCTGAGCCTCACGCAGCATTCCACAACGAAGCAGTCCAGACCGCATTGTTCTGTCAATTCTGGTGTCAGAAGCGTTGACAGTTCAGTCGATCTTCCAATCCTCCAGAGCATCAGTAACATTCCAGCTGGTGTATGTGCTGAGTACCCAGTTATCGATTCTCAACCTGGGGCCCCTGGTTTAAGGGTCTTTA | |||||||||
gi|159618316|gb|EG382812.1|EG382812 BG01017A2E06.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG ACTAGTACTCCCTCCGTCCCG EST sequence (targeted fragment marked with yellow): GCATTTTTTTTTTTTTTTTTTGGATAAAAATGGATGTACTTACAACTAAAATACGTCTAGATACATTCATTTCTCCGACAAGTAATTCCGGACGGAGGGAGTACTTGAGAACTTTTGCGTTTTCTGGAAGAGAAGTAGACCTATAGTTGAACTGTCAAAATGTCTTATATTTGAACAGAGGTAGTATATCATATCGTCTCGATTACAAGTGCCACCGCGCCCGGCGGCCGGCCTCCTCTTCTCCTACTTGTTGAATGCGGTGCAGTCTCGTCTGATCTCCCCGTCCCCGCCGCTCTTCACCCCGACCCTCCCGAGATTGACCATGGCCTCCTTGAACGCCTCGAAGAAGAGCGTCTGGTTCCCGGCGAACCCCTCCACGGCCGGCCGCGACGCGGCGCCGTCGTTCAGCGCCTGGTCGGAGGCGAACAGCCCCAGGCCCGCGGCGAGGTTGGCGTAGTATTTGTTGTCGAAGACGGTGGGCGTGACGGGGTCCATGTCGACGGCGATGGTCGGGTCGACGTCCGGCGGGCACGCCGCCATCAGCTGCCGCGCGTACGACGGGCTGTACGACGGGTCCACCGCACCCTGCCGGTAGAGACGGCCGGCGAAGCGCGCGCAGTGGGAGAAGCCAACGGTGTGCGCGCCCGAGAGCGCGACCATGTCGCGCACGGTGAGGCCGTTGCCCGCGAACAGCGCGGCG | |||||||||
gi|159730448|gb|EG379705.1|EG379705 BG01010A1A07.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG ACTAGTACTCCCTCCGTCCCG EST sequence (targeted fragment marked with yellow): GCATTTTTTTTTTTTTTTTTTGTCCAGGGATAATTTTCATATTCTAGATGATCTTGTCCAGGGATAACAATCATACAGGCCTCGGTGCCAACACTCAGCTTGTACACCTAAACTACTCCCTCCGTCCGGAAATACTTGTCGGAGGAATGGATGTATCTAGATGTATTTTAGTTCTAGATACATCCATTTTTATCCATTTCTCTGACAAGTATTTTCGGACGGAGGGAGTACTACACATGTTGTGTTTGTGCTGTCAGTTTACAGGTTACAGCTAATGCTACAAAACTGGGTGGTTAATGGTACACTAATGCCCCAAGAGAATCCATAGTTGCTGTCAATTCTGATTCCGCATGATGTGCTTTCTTCCTTCAAGCTCTGAGTTCTCTTCGAAAGCACATTCAGGCCATGACTCGGGAAGCACAAGCGAAAATCATAGATCCGAATAAATGTCCAATTCTCAGTTTGTGCTTTAAAGTGAACTTACAGGTCATCATCATCCACCATCAGTTCATCTGGAAGGTGTACTTTCTCCATTGCAGACTGCCAAACATCAGGCAAACATTCTCTCAAAAAAAACATCAGGCAAACATGTAACAGTATTCAAACACAAGTGATTCCAATCAATGATACCAGCGCGGTAATGCGAAGAAATTATTTAACTAGCAATTATTATGGGACCACTCTAGGAAAAGAAAAACATAGGTTGGTTTATGTATAACAAAAAAAATGTAGTGAAGGAAACAAAAAGACAGCAAAAGGGGCGGCTT | |||||||||
gi|159658847|gb|EG396409.1|EG396409 BG01036B1A11.f1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG ACTAGTACTCCCTCCGTCCCG EST sequence (targeted fragment marked with yellow): TGCTACATATAGCTTCTATTTGTTCTCACTGATCCCACAATTCAACCTAGTCACAGTTACTTGTCTAAAATCAAGTTGAAGGTCTTTGCAATTACTTGATATGTGTTACTGGATTAAGCAGCTTCTATCTGTTCTCAAGTGATCCCACAACTCCACTGTAGTTGCAGTTGTCTAAAATCAAATGGTAGATTTTTTCTCAGAGTTATTATTGCTGGATCAATCTTCTGATGTTACTGCTGTCGGTGCATGAAGGTCTCCATTTCTGGAAGACTCCATCTGCATCCGGTCAAGCATTATAGTAGTTTGCACAATATGGCCTTTGTTACATGTTTGGTGATCGGTGTTCTTCGTAGTATGCTGGGAGTTTATCACTTAATATGGGACGGAGGGAGTACTATCGAGCAGCAGATAAAGGGTTGAGCCGAACAGAAGCTCTCTTTCTTGGGAACTTTAGATGGCTACCATCAGCCCATCAGTCTGCTGAGCTCATCTGTTTCCCTGAAGAGTTAGTATGGGAGTATCAAATAGACATGTATCAGCAACGTCATCAGTCTGCTGAGCTCATCTGTTTCCCTGACTGAAGAGTTAGTATGGGAGTATCAAATAAAAATGTATCGGCAACGTCAGAATGGTTAGGAACCTTCATACAACAGTAACTAGAGGCAATACCAGAGCAATTCGTTCTTCGAAAGCCTGAATATCGCTGTTGATATTTTGTCTATAGTAAGCACACTGCATGCATGTCCCGATGTCCGGTTATTGGCTTTCTCAATATTTCCCTTC | |||||||||
gi|159749253|gb|EG379745.1|EG379745 BG01008A2C05.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG ACTAGTACTCCCTCCGTCCCG EST sequence (targeted fragment marked with yellow): CGATTTTTTTTTTTTTTTTTTAGAGCTTCCCGAGCTAGTATATATATTGACAACCCGCACTATTTACATTCTGTACTGATCCGAGTCCTGCCGACCTCCTTGTGTAAATAAATGTTAAATGTCAACTGAACCATAGGATTCGGGGTCAGTGCACCAAAAAGTTCGGAGGTGTGCACTGCACTGTACAGGACTTGAATTTGACAGCACACCTGTTTGCTAACTTCCCTTTGTACAGTCATAGTAAACTTTTTCAGCGGAATGCTGTTAATCAGTCGGTATGTTCAGACAGTATCCTCAGCGTGCATCTGATCTACCTGGCGACATCTCCAGGCTCCAGATTAGACTCTTCTAAAACCTTAATAACACTATATTGGTGAACGGTGACCAATCTCCCCCCAAGGGCAACAACATTCTCTTTGTTTTCTACTCCCTCCGTTTCTAAATATAGGTCCTTTTAGAGATTTCAATACGAACTACATACGGATGTATATAGACATATTTTAAAGTGTAGATTCACTCATTTTGCTCCGTATGTAGTTCATATTGGAATCTCTAAAAAGACTTATATTTAGGAACGGAGGGAGTATTAGCCAAAACAGTGTTCAAACTTCGCGGTTTCCAACATCAGGTATTGATTCCTGAATCGCTTGAGTAAACATAGCAATCTTGTAGGTAAAAAACCCAACGAGCATGGGTATCAACTCCAGGTGCATGAAGCCGTAATCTGGAACTAGTATCGCATTCCATCGATTGTACATCAT | |||||||||
gi|159720119|gb|EG381852.1|EG381852 BG01014B2H05.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG ACTAGTACTCCCTCCGTCCCG EST sequence (targeted fragment marked with yellow): GCATTTTTTTTTTTTTTTTTTAGAGGCATTAAATTAATGACAAATTGTATACNNNNTTGTAACACCATCATCACTCTCGAAAGGAACGAACTTTCTTAACAAGCAAATAAGATACAGTACTTCCTTCGATTCATATTACTTGTCGCTCATCTAATACAATAATATGGATCGGAGGGAGTAGTAGTGTTCTCTGTAGAGCTAGTTCTTGGGCAGGAGCACGTCGCGGACCAGCCCGTCGAAGTTTTGGTGAGACGAGCCGGCGGGCATGGCCGCCTTGACCGCGCTCTCCTTCCACTCCTGCGCTCTCTTCCTCATGCTCTTCCCCTTCTCCCCTTCCATGATCTCCGTGATAAGTCCCGCAACCGCGTTGCGCCGGACGTTATTGTCGATCTCCATGCCGACGCCCCACTCGTTGCACTGGTACCTGCAGTTGGTCTGCTGGTCGGCGAAGAATGGCCAGCTGATCACCGGCACGCCGCCGCACAAGCTCTCTAGCGCCGAGTTCCAGCCGCTGTGCGTCAGGAAGGCGCCCACGGCGGGGTGGTCCAGCACCTCCTGCTGCGGGCACCAGGACGCCATGAGCCCGCGCCCCGCCGTCTCGGCCAGGAACTCCTCCGGGAGCACCGCGGCATCGCCTTTTACCAGGTCTCGCCGGACGATCCACATGAACTGCTTCCCGCTCTGCGCCAGCCCCCACGCGAACTCCACCATCTGCGCGCTGGTCATGACGGTGATGCTGCCGAAGTTGACGTACACGACGGAGCCGGGCTCCCTGCCTTCCAGCCACTCCAGGCACTCCTCCTGCTCCTTCCACA | |||||||||
gi|159671782|gb|EG400836.1|EG400836 BG01039A2E10.r1 BG01 - normalized library Leymus cinereus x Leymus triticoides cDNA clone BG ACTAGTACTCCCTCCGTCCCG EST sequence (targeted fragment marked with yellow): GCATTTTTNNTTTTTTTTTTTCAGTCTGAATTAACCATATATAATATGCCCCTCGCAATGTTCCACTAGTACTCCCTCCGTCCCGAATTACTTGTCGCAGAAATGAATAAAAATGGATGTATCTAGAACTAAAATACGTCTAGATACACCCATTTCCGCGACAAGTAATTTCGGACGGAGGGAGTAGTAGTTATCACCCCATCATGTTCTACTCTACAGGATATGTAAAAAGAGGTGTGAAATAGTAACACACAGTATATATTACAGTGCACTGTACGTGCAGCCACCACACCATACCATAGCTAACAGTGGCGGCCAGTACCACACAAGAACAGAAAAGAAAACAACTTCACACTGAAGATTTCCCTTGAAGAGGGCAACTATACCAATTGCGTTGATCATCTGTATGTGCAGAAGCAACCATAGTATCCGTATCTCTGTTCAGTATTTCTGCTTTGAAGAAACCACATATTTCCAGGAGTTTGGTTCCCATAGTTTAGGCCCCGTAAATGCAAACCGATGTCAGGGTCTCTCTATGAAAAATAACTGTCAGAAGTAGTAAAAATAACCTTCACATGTAATGTTGTTGCTGGCTCCTCCGTAACTGCAGCTCAGCTGCGAGCTGAGAGCACTTCCTTTTTGTTTCCTCTAGTTCATGCTCCAGCTCGCCAATCGTCTGCTTCAACTGTGTATCTCGTTGCC | |||||||||