| mature miRNA: ACTCCCTCCGTCCGAAAATAT species: Cynodon dactylon database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|209847450|gb|ES297865.1|ES297865 _19X_F01 Bermudagrass Normalized cDNA Library Cynodon dactylon cDNA 5', mRNA sequence ACTCCCTCCGTCCGAAAATAT EST sequence (targeted fragment marked with yellow): CGGGCACATCCTCTTCATAGCATCACGCTCATACTCGTGCTGCTCATGACCCTCGTCTCCATGAGCTCCAAGGTAAAGTGACATGATTTCACAATGGATATCCCAACTTCTAGTCTGAATTTCTTGTTGACTTCTACTCCCTCCGTCCCTATTTACTTGTCATCCTAGCCTCCTCCAAATTTCTCAATTTACTTGTCATCCTCGCATCCCAATGCACCTTTTTACTTTTCCAATACATCTCTATCTCTATCTCTCTCCTCCTCGTTTTCAGCGCATCCACCTTTTTCACCTTCTCTTAATCTCCGTGCCCAACTCTAAAACGACAAGTAATTAGGGACGGAGGGAGTACCATTTTGTTTGTCCACGAACTCAGTTCAAGGCAGGGTATTTGGCACCAGGGCTGATGGGGGTGTACGTTGTGTTTCTGTGCTGGTCGGCGATTAGAAGTGAGCCGCACACCGAGAGTTGCAACAGGAAAGCTGAGGTGGCACCAAGTGCAGATTGGCTCAACATCGCGAGTTTTGTTATTGCGGTAATCGTCATCGTCGCGGCTACCTTCTCGACAGGAATAGACTCCAAGTGCTTGCAGTTCAAGAAGGCCGAGTCGGAGGAGGAGGACGACGACATACCCTACGGCTTCGGCTTCTTCCACTTCGTGTTCGCCATGGGCGCCATGTACTTCGCCATGATCTTCGTCG | |||||||||
gi|209854889|gb|ES302595.1|ES302595 _34Z_D12 Bermudagrass Normalized cDNA Library Cynodon dactylon cDNA 5', mRNA sequence ACTCCCTCCGTCCGAAAATAT EST sequence (targeted fragment marked with yellow): CCGGGGTTTTTTCTCTGGACTTAACGCACCAGGAAAGTAATACGGATTTGCTACTACTCGCTCCGTTCTAAATTAAATGACATTTTAGACTTCTCGAGTTTTCTTAAATTATAAGACATTCTCGCTTCTCAATGCATATTTTTTTAATTCTCAATATAATATTCTCTCTTACCATTATATCTCTATATCTCCCTTCCTCATTTTCAGTGTACTCACCTTTTTCATCTTTTCTTAATTTCTGTGCCCAGAGTAAAAACGTCATGTAATTTAGAACGGAGGGAGTACCATCTACAGCTAGTGTAAACATATTTTAAACGGAAATTCTATACGTCAGGCGACTGAAAGTTGCGGCATCTTTCAATCGATAGTGTCAGCCGCCGAATCGTGTTGAGATCTGTGCGCGGAGCGGGCGCGCGGGGCATGTGGGCACAGAAGCGTGTAACAGGTCTGCGTTAACGGGTCTGTACGATTTTGATTGTAGTTTAATTTGATTTGATTTATAGGGTTATGTATTTTGTATGAGATGTATTATAAAAATTTATCTTTTGTATTTTATAGAAAAAATATTTATTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGT | |||||||||
gi|209849485|gb|ES298385.1|ES298385 _29X_D12 Bermudagrass Normalized cDNA Library Cynodon dactylon cDNA 5', mRNA sequence ACTCCCTCCGTCCGAAAATAT EST sequence (targeted fragment marked with yellow): AGAGATACATTGTGCCTTACCTTGAAGAAAACCGTCAACCATTCCACCGATCATTTCTGATCTGCTAGGTGCGACCAGGCGAGCCCTTAATCTGCAGGAGAGTGAGGAGCCACCGTTGCTTGACTCCTCATCATCGTGACCAATCTTCTTCCCTGGCACGGATTGGCACCTCCCTGCCGTTTCCATGGATGTTTATGTACTAGTGCGATTGATTGATGCTGTCTACGATCTGCTTTGTAGATGAACAGCTAAAGAAACCTATGTGTATTTTGCCTGTTGTGTTCTTGTCATGCAACGAGGCATTTATCTTTCGATGGAAGTTGTCTCATCAACGCTAAATTTATGCTACTCCCTCCGTTCCATTATAATTGGCATTCTAGCCCTGAGCACGAAGATTAAGAAGAGAAGGAATAAAGTAGATGCGCAGGAAACGAGGAAGAGAGAGATAGAGATAGAGATGTATTGGGAAGAGAGAGAGAATGACAATTATTTTGGAAAAACTGGAGATGGCTAGAATGTCAATTATTTTGGGACGGAGGGAGTATTGTCTAATTTTAGCTTTGATCTCTGAACTGAAAGTGACACTTTTTGAAATGTTGAGAAAACATATAAGAAAACGAAATACTTTTTTATTCTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTGGT | |||||||||
gi|209862286|gb|ES304568.1|ES304568 -48-N12 Bermudagrass Normalized cDNA Library Cynodon dactylon cDNA 5', mRNA sequence ACTCCCTCCGTCCGAAAATAT EST sequence (targeted fragment marked with yellow): GGGGGATACGAGGGTGTCAAGTAAATTGGGAAAACTTGAGAAGGCTAGGATGTCAAATAAATTGGGACGGAGGGAGTACATTCGCTAGGAGGAGCTCCCTCGTGTTCGTGAACCCGCTGCTGTGGTCTGTACAACTTTAACATCCCACGTTGACATTGTTGTTTGTGCTGTAGTGAGTTGAGTATTTGAAAGCGAA | |||||||||
gi|209855729|gb|ES293898.1|ES293898 _07Y_B08 Bermudagrass Normalized cDNA Library Cynodon dactylon cDNA 5', mRNA sequence ACTCCCTCCGTCCGAAAATAT EST sequence (targeted fragment marked with yellow): CCGGGGTAAATGATGTAATTACTATCTTAAAAGACTTGGCATTCTAAATGACTTCATACAATTCAGTAAAAGTGACTTGCCCAGTTCAGCCCTACTATACCACTTTCTACTAAAGCTAGTCCTCAAATACTGTGAGGTAACATGATCATTTCTCATTTTCCTTTCACTTGAAAAGTACTCCCTCCGTCCCAATTTATTTGGCATTATAGGTGTGGGCACGGGAATTAAGGAAAGTTGGTAAATGTAGGTGCGCAGAAAACGAGAAGGAGAGAGAGAGATAGAGATGTATTGGGAAGAGAGAAAGGTGCATCGGGAAGTGAGAATGCCAAACATTTTGGGAAAATTGAAGTAGGCTAGAATGCCAAATATTATGTGACGGAGGGAGTAGAGATTAGTGTTATTTTATTATTTTAATTATACGTTAAACCATTAAGATCTCTTCGTACTGAATGGAACTAACAGGGCACCCTACTTCAACTACCTATTGGTAAATAGAAATCACAGCCACAAAGGCATGTAACCAAAAACAAGCTACCTTTTTACCGAAGTTCCGATCTTTCCGCTTCAGTCTGAATTTGTTCAATGCAGCTTCTCGTTGTGGGTACCGATTATGATACATGTCATTACCACTTCCGCTCCCACTTCCGCTGCCACCTCCAGCCCCATTTTTGGCCGGTATACCATTAACACTCTCCATGTTTGGTCTTGCAATGTTGGGAGCAGTACTACACCCATTCTGTCCATTGCTTGCGTTATGACTACCTGAGATTGCCCCATTCACACTGTAGTTTGCAGCATGACATTCAACAGGAGGAT | |||||||||
gi|209852481|gb|ES303241.1|ES303241 -45-B13 Bermudagrass Normalized cDNA Library Cynodon dactylon cDNA 5', mRNA sequence ACTCCCTCCGTCCGAAAATAT EST sequence (targeted fragment marked with yellow): GGGTGTTCAATGAATCTGGTACATAGCCAGAACTGCATATATTTTGAAACGGAGGGAGTAACTACCTAGTAGTGACCTCCTGATGACAAGATTATTAAAAGGGCGGCACCAATGAAGGAGCAAAACACACGGCACATGTTGTCCTTTTTTGACCGTGCGTTTAATTTGCTCCTAGTAGTGACTAGTACTACTATAGTATATTATTAGCAGTTTCCTGTAAACGGCTGCTGTACGTGGCCATCAGTAGCTGCCACCCATTTTAGTTGCCCACCCCTGATGATGTATTTATTCGCTCAATTGAACCTACTATCTTGCTGGACAACGGTAACTGTTAATGCACTGCCTGCAATTTGATGTGAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAACAGAAAAAAAAAAAAAAATGTTAAAAAAAAAAAAAGAAAAAAAAAAAAAAA | |||||||||
gi|209860140|gb|ES296151.1|ES296151 _20W_D12 Bermudagrass Normalized cDNA Library Cynodon dactylon cDNA 5', mRNA sequence ACTCCCTCCGTCCGAAAATAT EST sequence (targeted fragment marked with yellow): TCACGTATGCTGCCCATCCAATCCAGCCAAGGTCACTGCTCCAGGAGGCCAAAACTGAAACATGTCGACGCCCATTGCTCCCGCATCCTCCCAGCGTGTCATCTCCACCCAGCTGCCTGCTCGTCTCCTCATCTCTTCATACTTTCTCCATACGAGGTGCCCTCTCAGAACTCAGATCCATCCTCAAATCCACCTAGTCTGCAAGCCCTCGCACCGCAGAGGGACCGAGCGGAGGATGTGACTACCGTACACCTCGCTTACGGCAGTGTCGAGGAGGAGCTTGCAGTCCCCTTCGATGCCGGCGCGGCAACGGCAAGAGCAAGAGTTGATGGCTGGGGATGAAAGCAGCGAGAAATGCGATGGGGAAGACATGCGAGGCGTGCTTGTTTCATTAAGCTTCCTGCTTGTTTTTGGCTCGAGAAGCTAGGAATCCTAATATTTATGGACAGAGAATTCCTAATATTTATGGACAGAGGGAGTATCTAGCTAGCATCCCCAGCAAGATTTCATTAAGCTGTTAGGACATTGTTTCATTGCATTTTGATTTACCTTACATTTCAACAATAATGGTAACATTACCTCAAAGAAAAAAAAAACTTCCCTC | |||||||||