| mature miRNA: ACTCCCTCCGTTCCAAAATAT species: Agrostis stolonifera database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|239779853|gb|GR281212.1|GR281212 Yan-SSH57-M13R_2009-05-08_1/Yan-SSH57_F03_021_1 HSP-ipt transgenic creeping bentgrass subtra ACTCCCTCCGTTCCAAAATAT EST sequence (targeted fragment marked with yellow): ACACGGGGCAGTTCTTAGATGGAAATCACAGCCGAATTGCGTATGCAAAATCCGAATAGCTGCTCCATATGCTGGAGGGAAGGGCACGGACCATCGAGGCGGCGCATCCTACCTACTACTACTCCCTCCGTTCTAGTTTTAGATTTGTGAAGTGGATGTATCTAGACTATTTTTAATGTATAGGTTCGTTTGAATCTATACATTAAAATTAGTCTAGATCCATTCGTTTCACAAAGCTAAAATATCTTATATTTTGAAACGGAGGGAGTACCTGGAGAAGACCTTCGATTCATCTCCTCAAGCCAATTTTCGACAATTCAAAAATCACCATTTAGGACATTAGAAGATTGTTCAAGACTGAATCGCTGACCCTGCATCCCATGTAGGCTGT | |||||||||
gi|239777344|gb|GR278122.1|GR278122 Yan-SSH05-M13R_2008-12-17_1/Yan-SSH05_C10_076_1 HSP-ipt transgenic creeping bentgrass subtra ACTCCCTCCGTTCCAAAATAT EST sequence (targeted fragment marked with yellow): ACACTAAAAATAGTCTAGATACAATCACTTCACAAAGCTAAAATATTTTATATTTTAAAACGGAAGGAGTAACATATAAGCCTTGCGAAGGAGAGATCGACTAGGTTGTAAGGTGAAATAGGTGACTGACTAGGGATCGGAGCGTAGCACACAATCCCTAATAGCTCATCGAGCTAAGTGGCGGGCTTCCGGGAGCATCAAGCTGAGAGAGAGCAGCCTCCACGATCTCCTTCATCTGGAAGCGATCCATGTCATCTGCCTCGACGAAGAGTGTGTGCATGAGGAAGCCGGAGACGGAGGTGATGTTGGCGGTGATGACCCTGAGGCGGAGTTCCTCGAGCACGCGGCACACCTTGGCCATGGCGTCGCGCTGCTTGGTGCACGTCACGCTCACCACCAGCACCTTCTCGCTCACCTCCGACACGCGCACCTCCAGGACCTCGACGGGCGGGGAGACCGCCTCCGCAGCCGCAGCGAGCAGCGCGTCGTTCATTGACGAAACCGACAGAGCGCGCTTCACCTTCTTCCTCTGTGCCGGGGAGACCTGCTCCGCGAAGATGTCCCCGTCGTAGTCCTCCTCTTCAGGCCCGGCGGCGGACTCKAGCGCCGAAWCCTCCGCCGCCATCTGACGCTCCTCCGCCTGCAGCTGCTGAATGTACCTGCCCGGGCGYCGCCCGGGCAGGTAYTTTCGGACTCTGCTCCAAGCAATTGTGGTG | |||||||||
gi|82775162|gb|DV868724.1|DV868724 CRP8456 Creeping bentgrass EST Agrostis stolonifera cDNA clone CRPRANDOM2T_G10 3', mRNA seque ACTCCCTCCGTTCCAAAATAT EST sequence (targeted fragment marked with yellow): CTTTTTTTTTTTTTTTTTTTTTTTGTCGGAAAGATGAAAACCTTTTATATTATGACACGGAGGGAGTACCAGTTTCCAATCTCCAAAGGGATATCTTATCAGCAACGCAACAACATCACTCAAGCTCGGTTGAAAAAAAAACATTTCAACACAAAAGTATTTCAGTCAAGCCTCTGAACTAAGTTGGCATCATGCAATGATGAAAGGAAGGACGGTCAACATGAATGCCTCGTAACTGAAAGTTGCAGACCCGGAGTAAGTCGTGTCTTTCTCCTTGAACTTCTCAGTCAGACCCTTGACTGTAAGGCAACACTCAATAAAGTTATCATATTCAACTGCTTTGCTCATGCCCCCAGTCTTGTCGAATTTAGACACAAGCAAGTCTAGCACAGTTGGAGAAACTGAATAACCCAGACTGAGAAGAGCATCACGCAGCTCTGATGCATCAATTTTACCACTTCGGTCACGGTCAAACCTCTCAAATATAGACCTCCAGTTCTGAAGACTGTAGAAAACAGAAGTAAACTCCTTGGGCCCGATCCTGCCTCGTGCC | |||||||||
gi|239779197|gb|GR282135.1|GR282135 Yan-SSH52-M13R_2009-05-07_1/Yan-SSH52_F04_022_1 HSP-ipt transgenic creeping bentgrass subtra ACTCCCTCCGTTCCAAAATAT EST sequence (targeted fragment marked with yellow): ACACCTGACGGTATGACCAGGACTGGAATGTTACGAAGTAGCATGTCGGATCCATTAAGAGCGCATGAAAAGAAACCGCTCTGAGGTCCGAGCCCCAGCTGACCCACGTGTCCTCCACCCCAAGCATAGAGGGCCCCACCTTCGGTTACAGCGCAAGAGTGAACCCCGCCACAAGACACATCCCTAGTTACTATTCCTTCAAGCGCAACTACTCTCCTTGGGATTAGCTCCTTGTCTCCAGACTGAAGCGAGCGATGTCCAAGCTGCCCCAGGCTTCCAAGTCCCCATGTATATCTGCAAAATCCAAAGATATTTGTAAATAGAAAGAATCATGATCCTGTTAGAAGTGGGTCTGCATGGTGAAATGTGGAAGATCAGAAGCTGTTACAACAGACCGACTTCACATGAAGGTTTTGAAAAGAACATGCTCAAGAAACTTGGTAATTAACTCTATCTCCAAAAGATGTTGTTTATATATCAAAATGGTCCACGCACTTTCACCATCACTTTCTTCCAATATAGGTCAGTAGAAGTTATAGAAATTACATGGAGCAAAAGCATTTTTATGACCACTACTATTAGCGATTTCATGTCAAAAATCTATATCCAAGCATATTAACGGTTCAAGTTTGAAAAGTTTAGCTGCATGATTGATTAAACTATATATATTTGCAAACGGAGGGAGTTGCAAGATAAAATCCAAGATAGCATTCCTAAAATAAATCCAAGATAGCAACCAAAGAAGTCGATAATCAATCAAAAAATTCATGGCATTGT | |||||||||
gi|239775872|gb|GR279735.1|GR279735 Yan-SSH33-M13R_2009-04-14_1/Yan-SSH33_D07_057_1 HSP-ipt transgenic creeping bentgrass subtra ACTCCCTCCGTTCCAAAATAT EST sequence (targeted fragment marked with yellow): ACATGGAGTTGTAACAATAAGGAACCTTAATTACAAATTCCGAACCGTCACGCAAGTCTACAATCTCACGATGCACGTAATTAGTCTGTGCATTGGAGATACTAGCTAGAAGAGTCTGAGGGGAAAAGGACAAAATCAAACGGCCTGTGTGATACTCAGTCTTAACAATCTTACTACTCCCTCCGTTCCAAAATATAAGATGTTTTAGCTTTGTGAAAAGAATATCTTATATTTTGAAACGGAGTGAGT | |||||||||
gi|239776983|gb|GR280576.1|GR280576 Yan-SSH43-M13R_2009-05-05_1/Yan-SSH43_D02_010_1 HSP-ipt transgenic creeping bentgrass subtra ACTCCCTCCGTTCCAAAATAT EST sequence (targeted fragment marked with yellow): ACGAGCAGTTCAGCAACACCTTGTTCATGAAGCCTCAATATGAGTAGCTTCACATGTTTATCTTTGCAACCTATTCTTTCTTCTTTATCATCGATCGTCCTCTTATGCGTTTCTAATTATATTTGTAGAGTCTGTTTTGAGTTGCTAACTAATTTGGTTGTGTTAAGTTCAGTTGTTGGTGGTGACTTTTTGCGCGTTTTTTTTGTTTGGCTTGGTTTGGTTTTGGAGGACGATGATGGAAACAAACGAAGGCACGCTCGCCGAACCTAAAATGGCATCTCTTCTCGAATGCCTTGATGATCAGACATTGTGATATGGACTGAGTTCTCCACGGTGCTCCATTCCTTTTCTTCTAGTTTCCGCTGAAATCATTTCAGACAATTATTTGTGTTTTTTACCAGATATCTTTCTATATGTGTCTCTGTGATGTCGTCATGACAGAAAATTTTATGGCAATCCAAAGTTTGCTATTTTCAGAGTAGGAATTGCAGATTAATTAAAATTTATTGGAGAAACTACTTACTGTTGGCTTTTATTTTAAGAACGAATAATTACTTTTGTTTGTGAAAAGATATGTTTCAACAGATCCATGCGTTTAGTGTGGATAGTTTTGTAGTGGTCAATTTTGATACTCCCTCAGTCCCGAATAGATGTCGAAGATTTGTGAAAAAAATGATGTATTTAGAGTTAAAATGTGTCTAGATACGTCCTTATTTAGGCAAATCTCTGACAACTATTTTAGAACAGAGGGAGTAGAAGACTTAAAATTGATGGTAGCAAAATCATTATGTGAT | |||||||||
gi|82774816|gb|DV868378.1|DV868378 CRP8110 Creeping bentgrass EST Agrostis stolonifera cDNA clone CR-EST07T_E12___ 3', mRNA sequ ACTCCCTCCGTTCCAAAATAT EST sequence (targeted fragment marked with yellow): TGGCCGTTTTTTTTTTTTTTTTTTTTTATACACGATCAGATCGTTCCTTTTGCGCAGTGGATTAGTTCCGTGCTAGAATACTACTCCCACCGTTCCGTATACTTATTTTGAAACGGAGGTAGTACTATATTTCTTTGCAGCGCGAATCGTTGCATGACGCCGATTTTGACTCAACAGAATACACATCCCTGACTGGTATTTGGCTGTTTCTAGTCCAAACTCTGCATAAGCAACTCTGCAGTCTCAAGCAGTTCGCAGGTTCAGTGAAAACGCAATTAAACACTGCTCTTAAGTCTTAACTACAGTCTTCCCTTATAATACTTGGGATTCCACTTCTGCCCATACGATCGAGGTGCCACATGATGATTCTCAGCCCTTGAAGAACCCTCGTGCC | |||||||||
gi|239779118|gb|GR282056.1|GR282056 Yan-SSH51-M13R_2009-05-07_1/Yan-SSH51_E12_088_1 HSP-ipt transgenic creeping bentgrass subtra ACTCCCTCCGTTCCAAAATAT EST sequence (targeted fragment marked with yellow): ACTTACAACAAAACAACATATGACATATAGCACACCCATAAATTTGCTTTCACGAAACACACATACTTATTTACTTAACTGAACAATATATATACTCCCTTCGTCCTAAAATATTTGTCAGAGATTTGTCTAAAGAAGTATGTATCTAAACATGTTTTAACTCTAGATACATCTATTTTTTGACAAATCTCTGACAAGTATTTTAGGACGGAGGGAGT | |||||||||
gi|239777278|gb|GR278056.1|GR278056 Yan-SSH03-M13R_2008-12-16_1/Yan-SSH03_D12_090_1 HSP-ipt transgenic creeping bentgrass subtra ACTCCCTCCGTTCCAAAATAT EST sequence (targeted fragment marked with yellow): ACTGGTGGGTCGCTAGTAACAAGTKCATGGTCAAGAATGACGAAGGTCACTGGGTGCTCGAGGACCACGAGAAGAAGAAACAGTTGAGTGCTGACGACRGACRCGATGGTTGTGTTTAGTAACAAGTTCATTTCGTTCTTGCATGCATGCACCCCTCGGCCTTGGATGAGGCTTATACATACTCCTTCCGTTTCAAAACATAAGATGTTTTAGTTTTATGAAGTTAATGTATCTAGATCGCATTTATAGCGTAAAAGTTATCTAGAAACATTAGCTTCATAAAGCTAAAACATCTTATATTTTAAAACAGAGGGAGT | |||||||||
gi|239778633|gb|GR279411.1|GR279411 Yan-SSH19-M13R_2009-02-18_1/Yan-SSH19_B06_046_1 HSP-ipt transgenic creeping bentgrass subtra ACTCCCTCCGTTCCAAAATAT EST sequence (targeted fragment marked with yellow): ACACGCAGTTCCTGAAGAAAGATGGGCTGAAGGGCAAGAGAATCGGCGTCCCCAATGGCTTCTTCACAGGATACGGGGAGACACAGCTGAGGGTGTACTCCCTCAATCCCAAAATAGATGTCGAAGATTTGTCAAAAAATAGATATATCTAGACTTAAATTGTGTCTAGATACATCCTTATTTAGACAAATCTTTGACAACTATTTTGAGACGGAAGGAGTAGCAGGTATCAAAAAGATCCGCTGGTCTCTATTTCCAGCAACAAAACAAAATTTAGAACAAGTCCTCGATGATAACATCCACTAGCTGCAGGATGACACAAAATTATCTTATCACTTCTTCTCTTCCTTCTCTGCCTCAGCAGCCTTCTTCAGGCGGGCACCAAGCTGGCGCTGGTTCATCCTCTCAACACGGAGTTTGCCGTAAGCCTTGAATGCCTTCATCTCGTCGGTGACCTTCACAACCTCGACCGAGCGCTTCTCACCACGGGTAATTGGCATGTAGTCACCCTGGACCTGG | |||||||||
gi|239777318|gb|GR278096.1|GR278096 Yan-SSH05-M13R_2008-12-17_1/Yan-SSH05_A05_047_1 HSP-ipt transgenic creeping bentgrass subtra ACTCCCTCCGTTCCAAAATAT EST sequence (targeted fragment marked with yellow): ACGTGGACTACTTGAGACCTGAGKAGTGGAACTTTAAGATTGAGAAAGTGACTATCTGGAAGAATATTCCTTCTTAACGCGACATCTGAGATGTCAAACCTAGGAGTTTGATCCCCGGCCGGGGTGCACAGTGGATACAACCACCTTCCCAACCATCCAACAATACATATATCTACTACTCTCTCCGTTTCATAATATAAGATGTTTTAGCTTTGTGAAGCTAATGTATTTAGACTATTTTTAGTGTATAGATTCGAGTGAACCTACATATTAAAAGTAGTTTAAATATATTAGTTTCACAAAGCTAAAACATCTTATATTGTAGAACGGAGGGAGTAGAACAAGAACATGTTTGAAGCGTAGGACGACAAGTCGTCCTAGACGTCGGCCTTGAGGAT | |||||||||