| mature miRNA: ACTCTCCCTCAAGGCTTCCA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|52402460|gb|CV239614.1|CV239614 WS0232.B21_P05 PT-MB-A-13 Populus trichocarpa cDNA clone WS0232_P05 3', mRNA sequence ACTCTCCCTCAAGGCTTCCA EST sequence (targeted fragment marked with yellow): TCATGAGACACCTCTCTATGTGCATACACAGCATCAGCTCCAATAGCCTTAGCCAATTCAACCAATACAGTCTCTGGTCTCCCAACTCTCACCACAAGATCAGACCCTCTAGCCTGCAAGTTCTTGCGGAGGTCAGAGACCGATTCAATCAAGAAATTGGCACGATAAGGCCCAGTCTTGGCAAATCCAGAGGAAGATTTCCCATAGTCTCTCGGGTCAAAACAATAAACAGGCAAAACAGACATAGAGTCATTGTTGGCAGAGTTGAGGCACTCATTGTCATGGACACGCAAGTCATTGCGAAACCAAACGATGCAAGCTCGACGAGTTCCGGCAGCATTGGAGGGGTCGGAGGGGCGGCGCGGCCCAAGAGTGAGAGGAGTATGGAGAGGGTTGGCAGAGATGGTAGACTTGAAGGAGAGTTTGGGAGAAGAAGTGGAAGAAGTGAGAGAGAGGTGAGTTAGAGAGGTGGCTTGAGTAGGTATCTTAGCCTTGGTTGGAGGAGAGGAAAAAAGACTAGAGATTTTGGGTTGAGTGAAAAAATGGGTGGGTAAGATTGTGGGAAGAGAAAGAGAAAGAGAAGCAGTGGCAAATGGGGATGAAGAGACAATGGCAAGTTGCTGCTGTTGGTTTTGGTCTTCTGAAGTGGATTCTGGGGTGGTGGTTTCCAGGTTTTGAAGATGGGGATCCATTTTGGTTTGGAGAAAGAAAGAAGATAAGCTGTTGGGTCTGGTTTGTCTTTGCGTTC | |||||||||
gi|73889565|gb|DT492303.1|DT492303 WS02550.C21_E10 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02550_E10 3', mRNA sequence ACTCTCCCTCAAGGCTTCCA EST sequence (targeted fragment marked with yellow): TCGATCTCGACGATATAGAGGCATTGAGGGAGAGACGCTTGCAACAAATGAAGAAAATGGCGGAGAAGCGTAGCCGTTGGATCTCTTTAGGTCATAGCGAGTACACTGAGATTCCATCAGAGAAGGATTTCTTCTCTGTTGTCAAAGCTAGTGATCGTGTCGTTTGCCATTTCTATCGCGATAATTGGCCTTGCAAGGTGATGGACAAGCACATGGGTATACTGGCAAAGCAACATATAGAGACACGTTTTGTGAAGATTAATGCTGAGAAAAGTCCATTTTTGGCTGAGAAACTCAAGATTCTTGTTCTTCCAACACTTGCACTTATAAAGAATGCCAAAGTAGATGATTATGTGGTGGGATTTGATGAGCTTGGAGGGACAGATGAGTTTAACACAGAGGATTTGGAGGAGAGATTGGCTAAAGCTCAAGTAATCTTTTTTGAGGGTGAATCATAAATAAATTCATCTAAATCAAGTGCACAAACCAGGAGGAGTGTGCGACAAAGCGAGAGCCATGACTCTTCAGATTCAGATTAAGTCATAGTAAGCTCATTTTGGTACAAGGAGATTTTAATCCTAGTCTCGTAGAGCATGTGTGTTACAATCTGCAAATTGAGCCACAGCTCATTTGACTGCCATAGCTGTGTTGTTCGGTTTGTAGAAAGCAGATCGGATATTCTATCCTTAAGCTTTATGTTGTACAAGTCTATGAGTCTCAGCTGCTATATTGGGGTGGCATTGTCATTTGATAGTTGTATTTGATATAAACCTTATCGATTATTCCTTTTAAAGGGACCAAAAAAAAAAAAAAAAAA | |||||||||
gi|24065236|gb|BU873712.1|BU873712 Q059A10 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence ACTCTCCCTCAAGGCTTCCA EST sequence (targeted fragment marked with yellow): GGTGTAGTCTTGTGGGAACTTATGACCCTGCAACANTCCATGGAGAAATCTAAAACAAGCACAGATCATTGCCGCTGTTGGTTTTATGGGCGGAGGGCTTGAGATTCCAAGCAATGTAAATCCTTCAGTGGCTGCCTTGATTAAGGTCTGCTTGGATAGCGAGCCCTCAAAACGTCCTTCATTCTCTTATATCATGAAAACTTTACAGGAGCAGATAAACGACTCCGTCTCCCATCCAGCTGCTCCTCGAGTAGTTCGATGACAGAGCTATATGCAGTCAAACTGCTCACATGATTTCAGCCCTCTCATTCCCATGATATTTTCCAGGCTTTAACAAGATGTTGATCTCCCTTTTTGTATCTGCCATGAACTAATTCTTGTAGCTACAATTGTGAATATACACAAGAAGTTGTCAAGATATCAAATATCAAGCAAAATGGGTGGAAGAGCCAGGCTTGTCAGAGAAACATTCATAGGAGGAGTTGAGGCCTTGAGGGAGGGTGGTTCATTCATGTTACTAATTATACTGATGTGCCA | |||||||||
gi|52395976|gb|CV236414.1|CV236414 WS01224.B21.1_A06 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01224_A06 3', mRNA sequence ACTCTCCCTCAAGGCTTCCA EST sequence (targeted fragment marked with yellow): GAGGGTTATTTGTTTCAGCTGTGGATAATGATCCTCTTGTCACAGACACCGGCGTTAAGGGTCATGGAGGTGCTGAGAGCTCAATTTATGACAATCAGCTGTCAGCAGTGAATTCCCCAATTGAGGATTCTCCAGTAGGAAACAATGTTGGTGAGGAGTCAGGACCTCAAACCTCTGGAGCTTCCAATAGCTCAACAATTTCGGTGGATATGAAGTCTAGGCCAAAAAGGTCGCCTCTAACAGCAAGAGAGAGACTAAAGGCTGCGAGAGTTATCAGCCGTTACACAGAATCAAAGACATCAAAATCAGAGATGGGCAGGAAAGTATTGGATGCCCTGAGAGAGAGTGACAAGGGCAAGAAAAGATCTGGCCTTCCAGAAGCTCCTGAAAACTTGTTTGATGACAGCAAGCGAGGGTTGCCAAAGGAGGGATGGACCTTTCAATTTCCAGGGGGTTCAGAACTCTTTTTCATTGTCATTTCATTTGTTTTGATCAGCACAATAATGTTTGCAACGACTTATATTGTCTGGAAAGTTGGTGCAATCCATTTTGATGAGTATTAAGGTGGAATTTGGTGGGATTCCGCTATTTAGGTGAGCTACCTCTTCAGATACATCCATAGAAAGATCACAAACTATTTGGATTCAGGTATTTGCACAAGTTTCTTATATTTGTTAGTAATTTCATGTCATTTAGACAAGATACATGCATGAATGTACAAAGAATTGCTTGGCTGGCATTTATGTATCAAAGGAAAATGTATCAGGATGCCCTTTTGGTTGTCTTACTCTTACATGAATGACATAGTTTCAAATTTTATTTTATTATTTATTTGATGATAATGATGCTTAAGCTTAACCAAAAAAAAAAAAAAAA | |||||||||
gi|52388159|gb|CV232528.1|CV232528 WS0197.B21_O04 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0197_O04 3', mRNA sequence ACTCTCCCTCAAGGCTTCCA EST sequence (targeted fragment marked with yellow): GTACCAGTCAAGCACTTCCCAGGTACTTCCTCTTGCTACTTCACCTTCAACATCAAAATCAGCAGCCAAGAAAAGTTCCTTCTTTCATTAGATCTCCGTGATCAAGTAAAACGAGATAGTTTTTTTTTTTCCCCATGTATTTCTATTAACCAACTTTAGTCTTCTTTTTAGGAGTTCTTTTTCTTTAATCTTTTTATGGGATGGTGTTAGAAGGTTAACCTTGCCAAACCCTTTTGCAATGTCTGAAAAATCTTCGGGTGGGTGGGGGAGTTTGACACACTCTCTGCAGTATAATGTTAAAAGTTGGACAAGTGCAAGTGGGGGTCTTGAGGGAGTGATCTGTTGTCTTCACTCTTCATGAATCTCTGAGCTGTCTGATATCTGTAATCATTCTGGTGAGTGGTGGTACTACTGATGTTTTTGTCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73895328|gb|DT498066.1|DT498066 WS0114.BR_E13 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0114_E13 5', mRNA sequence ACTCTCCCTCAAGGCTTCCA EST sequence (targeted fragment marked with yellow): GGTTTTCGTGCAAGCGAGAGAGATCTCCCGAAATCATCCAACAATGGCAAACCCAAACGTTCAAGAGATTATAGAGAAGCAAGTACTTACTGTAGCGAAGGCAGTGGAAGACAAGATCGACGAAGAGATCGCAGCCTTAGATCGTCTCGATCTCGACGATATAGAGGCATTGAGGGAGAGACGCTTGCAACAAATGAAGAAAATGGCGGAGAAGCGTAGCCGTTGGATCTCTTTAGGTCATAGCGAGTACACTGAGATTCCATCAGAGAAGGATTTCTTCTCTGTTGTCAAAGCTAGTGATCGTGTCGTTTGCCATTTCTATCGCGATAATTGGCCTTGCAAGGTGATGGACAAGCACATGGGTATACTGGCAAAGCAACATATAGAGACACGTTTTGTGAAGATTAATGCTGAGAAAAGTCCATTTTTGGCTGAGAAACTCAAGATTCTTGTTCTTCCAACACTTGCACTTATAAAGAATGCCAAAGTAGATGATTATGTGGGTGGGATTTGATGAGCTTGGAGGGACAGATGAGTTTAACACAGAGGATTTGGAGGAGAGATTGGCTANAGCTCAAGTAATCTTTTTTCGAGGGTGAATCATCTCTAAATTCATCTAAATCAAGTGCACAAACCAGGAGGAGCGTGCGACAAAGCGAGAGCCATGACTCTTC | |||||||||
gi|52402744|gb|CV239756.1|CV239756 WS0233.B21_G05 PT-MB-A-13 Populus trichocarpa cDNA clone WS0233_G05 3', mRNA sequence ACTCTCCCTCAAGGCTTCCA EST sequence (targeted fragment marked with yellow): CCCATCCCCAGTGAAGATAGGTGTATTTATAAGCACATCAGAAAGAGCACTTGGACCAGGGGGGACATGAACAATATGGCTGGTGTCATTACTGTTCACAGCAGCAAGAAGTGCTTCCAGTTTCTCTGCCTTCCCATCACCTTCTTCACCGAAATCAACAATATCAAGTGCTACATTATTCTTTTTCAACTTTCTTCCAATCATCTCCAATACCTTCTTGTCATGTTTGATGGGACTTCCAACAAAGACAATAATCCTTTGTTGCTGCTTTTTATTTTGACGATGCTTGAGAGCCAATTGAGCCACCTGTATACCAGCAACCAAGTTCACCTCACCACCTATTTCTAGACCATGCATGCAAGCTAAGATCTTGCCAAGGTCACTAGTAGGTGTAACCAAAACACGAACCCCTTTTCCAGCCATTGTAAGAATTCCAACCGTGTTCTCTGGATTCGACTGAGTTTTAGCTCCACAAATGAGATTAACAGCATCTGATAGAGCTTGAAATCTTGACGGAGAGTAATCACCATTTCGCATCCACTCTGAATTATCGATACAAATCATTGTTGCCTCGAGAACCATGGTTACGGCGGGAGAGAGGGAGGGCTACTCGTCGTT | |||||||||
gi|73878988|gb|DT481726.1|DT481726 WS02532.BR_L22 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02532_L22 5', mRNA sequence ACTCTCCCTCAAGGCTTCCA EST sequence (targeted fragment marked with yellow): GAAGAAAACCACCTTGAAACCTTTCTCAAAGTGGCGGCCTCCATCATGGCTTCTCTAAGTGTAGCCAACAATAATTCAATTAAAAAATCAGCGGCGGTACTATACCACTATCCATGCCCAGATGGTGCTTTTGCTGCATTAGCAGCTCACCTTTACTTCAAAGCCACTTCTCTTCCCGCTATTTTCTTTCCAAACACTGTCTACAGCCCCATCAAGCCAGACCAACTTCCTCTCCATCAATTCAGTCATGTCTACCTTCTTGATTTCGTGGGGCCTTCTGGTTTTGTCCAACAACTCTCCTCCAAAGTTCCCAGGGTGGTTATATTGGATCATCACAAAACAGCAATGGAGGCGTTAGGTGGTAGAAGTTTTGAGGGAGAGAATGTGAGTAAAGTTATAGATATGGAAAGGAGTGGGGCTACTATTGCTTTTGATTATTTCAAGCATAAGCTTTTAGAGAGTGGTAAGAACAATTATGATGAGATAATCGCTGAATTTGATCGTGTTAGACGGGTATTTGAGTATATAGAAGATGGGGATCTTTGGAGATGGAGACTTGAAAATAGCAAAGCTTTTAGTAGTGGTTTGAAAGATTTGAACCTTGAATTCAATGCCCAATTGAACCCCTCCTTGTTCGACCAGTTGCTGTCATTGAATCTGGAGTCTGTCATCAGTCAAGGCATAGTGAGTTTCACAGTCAAGCAAAAGTTAATAGATGACACCCTTGATCAGTCATATGAAATTGCACTTGGAGGTGGAGCCTTTGGACGTTGCCTGGCTGTTAATGCCGATTCAGTTTCAGAGTTAAGGAGTGAATTAGGACACCAGTTAGCTACTAAGAGTCGTAATCTGAAGTTGAGGGGAATTGGAGCCATTGTATATAGAGTACCAGAGCTTGAAAATGA | |||||||||
gi|24073028|gb|BU881504.1|BU881504 UM63TF02 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence ACTCTCCCTCAAGGCTTCCA EST sequence (targeted fragment marked with yellow): TGTACCACCGTTGTGATTCTCTCTTTGTTTCTCTCTTTCCATTGTTCTCTTCTCCTCAGATCCATACAACAACCGTTTCTCTCTTTCTCACAGATTCCCTCTAAAATTTTATTTCACCAATTGAGGTGGTTCTTGTTTCAAAGTTTAAGCTTTTTGAGTTTTTGGTGGTTTTGAGAGAGAGTGAAGAATTTGAAGTGGGGGTGTTGATGGTTGTTGAAAAGAAGATAACTTTGAAGCAGAGAGTGAGAAGGAAATAGATTTGGTGGAGGTTGTTGGGCAAATGCAGTTGTTTTTTTTTATAATTATTATCTTAAAGGAGAAATAAAAATAAAGCCTTTGTTTTTGTTTAAAACAATAGATAAAAAGAGAACAAGTTCTTTTCTTGTTTGTGTTTATTGTTTTGTGGTGGGTTTTGAAAATCTAGAAGACTCAACAGGATCATCCAAAGAAGGACTTAAAAGAGATGGAATNTTTCACTGAGTATGGGGATGCCAATATATACTAGATTCTAGAAGTTATTGGACAGGGAAGCTATGGAG | |||||||||
gi|24066459|gb|BU874935.1|BU874935 Q073E10 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence ACTCTCCCTCAAGGCTTCCA EST sequence (targeted fragment marked with yellow): GGTGCAATTATATGGTATAAGCCTGAGTGGAAGATAATTGATCTGATCTGCACCCTAATCTTTTCGGTTATAGTTTTGGGTACAACAATCAAAATGCTACGGAACATACTTGAAGTCTTGATGGAGAGCACTCCAAGAGAGATAGATGCTACAAAGATTGAAAAGGGTCTGCTGGAGATGGAGGGGGTGATGGCTATCCACGAACTGCATATATGGGCCATTACCGTGGGCAAGATTCTCTTGGCTTGTCATGTGAAAATCATGCCCGAAGCAAATGCAGACATGGTGCTAGACAATGTGATCAACTATCTCAGAAGGGAATACAATATAAGTCATGTAACCATCCAGATAGAGCGTTAGCAGAGGTAAAGGAATTTACTAGTTGAATCTGGGGCGTGATGTTTCTGAGATTTATGCTTTTTCTATCACATGAACGCGTATACTGTTCATGGTATTTTTAGGTACCAGGTGGAAATTGTCATCTTTGATTTGGCCATGA | |||||||||