| mature miRNA: ACTCTGGCTTGGAACTTTTGA species: Picea glauca database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|292508318|gb|GW731111.1|GW731111 WS04814.CR_J22 WS-CRD-33 Picea glauca cDNA clone WS04814_J22 3', mRNA sequence ACTCTGGCTTGGAACTTTTGA EST sequence (targeted fragment marked with yellow): GGGGGGAAGATGCTGAAAGTTTCAAGCCAGAGAGATTCATGGAAGCAGGGTTCCTTGATGCAAAAGTGGAAAACTTTGAGTGGATTCCGTTCGGAGCAGGCAGGAGAGGATGCCCCGGACAGCAATTGGGAATACTTGTTGTAGAGTTCGCTGTGGCACAGCTCTTGCACTGTTTCAACTGGAGGCTTCTTGATGAGCAAAATTTGGATATGTCTGAAAGGAGCAATGGACTTACAGTATCGAAGGCACATGAACTCTTGGCTGTTCCAACTTTTCGCCTTCCGGTACTGTAAATCGTAACGTAAGATATATTTGTATTATGTGTTATCATATTTGTGATTGTTGTGATTATTGGTCATTATGAGGTAGAGGTCATTATGAGGTAGAGGTAGAGGTAGAGGTAGAGGTAGAGTTCGTCTCTGTTTAAATAATTTGAATTTGTCTGTTTTAGACAAATCCCCATGTTATCTATAAAACCTTTTTATGTGTTACTTATTGATTATTATGAAAAAAAAAAAAAAAA | |||||||||
gi|225915007|gb|GO364325.1|GO364325 GQ03407.SP6.r_O14 GQ034 - Needles - Mid-season Picea glauca cDNA clone GQ03407_O14 3', mRNA ACTCTGGCTTGGAACTTTTGA EST sequence (targeted fragment marked with yellow): GACGCGTCGGCTGCAAGCATAGAGTGGACAATGTCCGAATTGCTGAGAAAGCCGCCAGTGCTGAAGAAGGTTCAGAATGAGCTGGAACATGTTGTTGGATTCGAGCGCATGGTACAAGAATCTGATCTGCCTTCTCTCCGTTATTTACAAGCTGTGGTGAAAGAAACGCTTAGACTCCACCCACCTGGGCCGATTTCCCTTCCCCACGTATCTGTGGAGGATTGTACTGTGTTGGGCTATGAAATTCCCCGGGGCACTCGTCTTCTCATGAACTTCTGGGCAATTGGAAGGAACCCGAAGTCGTGGGAAGATGCTGAAAGTTTCAAGCCAGAGAGATTCATGGAAGCAGGGTTCCTTGATGCAAAAGTGGAAAACTTTGAGTGGATTCCGTTCGGAGCAGGCAGGAGAGGATGCCCCGGACAGCAATTGGGAATACTTGTTGTAGAGTTCGCTGTGGCACAGCTCTTGCACTGTTTCAACTGGAGGCTTCTTGATGAGCAAAATTTGGATATGTCTGAAAGGAGCAATGGACTTACAGTATCGAAGGCACATGAACTCTTGGCTGTTCCAACTTTTCGCCTTCCGGTACTGTAAATCGTAACGTAAGATATATTTGTATTATGTGTTATCATATTTGTGATTGTTGTGATTATTGGTCATTATGAGGTAGAGGTCATTATGAGGTACAGGTAGAGGTAGAGTTCGTCTCTCTTTAAATAATTTGAATTTGTCTGTTTTAGACAAATCCCCATGTTATCTATAAAACCTTTTTATGTGTTACTTATTGAATTATTATAAAAAA | |||||||||
gi|225915270|gb|GO365928.1|GO365928 GQ03606.B7P1_O17 GQ036 - Shoot tip - Active growth Picea glauca cDNA clone GQ03606_O17 5', m ACTCTGGCTTGGAACTTTTGA EST sequence (targeted fragment marked with yellow): TCGGAGATTACATACCATTCTTGGCCCGGATGGATTTGCAAGGCCTCAACCGTCGCTTCAAGAACATTCAGAAGACACAGGACTGCTTGCTGGAAAAAATAATAAACGAACACGTTTCGCACAAGAATCAGCCCAACGCCATGCCAGATCTTGTAGAAGTTTTGCTCGCAGCTTCTGCAGATGAAACAATGGAGTTCAAAATTACGCGGGACAACATAAAAGCCGTCATTAGTGATATTTTTGTGGCGGGAACGGACACGGCGTCCACAACCATAGAATGGGCGATGTCCGAAATGATGAGAAACCCCCCAGTGCTGAAGAAGCTTCAGGACGAGATGGAACGCGTAGTCGGAGTGGGTCGTATGGTGCAGGAATCCGATCTGCCTTCTCTCGTTTACTTGCAAGCTGTCGTGAAAGAAACGTTTAGACTCCACCCACCGGCACCGCTTGCCATTCCTCACATATCTGTGGAGGATTGCACTGTGTTGGGCTATGAAATCCCGAGGGGAACTTCTCTTCTGATTAACTTGTGGGCAATCGGAAGGAACCCTAAGTCATGGGGGAAGGATTTCGAAAGCTTCAAGCCGGAGAGATTCATGGAAGATGGATTCTTGGAATCAAAAGTTGAAAATTTTGAGTGGATTCCGTTCGGAGCAGGCAGGAGAGGATGTCCTGGACAGCTATTGGGAATGCTTGTTGTAGAGTTTGCAGTGGCGCAGCTCGTGCACTGTTTTAACTGGAGGCTTCCCAATGGGCAAGAATTGGACATGACTGAAAAGTATAATGGGATCACACTGCCCAGGGATCATGAACTCTTGGTTGTTCCAACTGCGCGCCTTCCAATATTGATC | |||||||||
gi|211878232|gb|CO480957.2|CO480957 GQ0162.TB_F22 GQ016: Primary, secondary SHOOT -N fertil. Treatments Picea glauca cDNA clone ACTCTGGCTTGGAACTTTTGA EST sequence (targeted fragment marked with yellow): GTGGAGGATTGCACTGTGTTGGGCTATGAAATCCCCAGCGGAACTCGGCTTCTGGTGAACTTATGGGCAATTGGAAGGAACCCAAAGTCATGGGGGGAGGATGCTGAAAGTTTCAAGCCAGAGAGATTCATGGAAGCAGGGTTCTTAGATGCAAAAGTGGAAAATTTTGAGTGGATTCCGTTTGGAGCAGGTAGGAGAGGATGCCCCGGACAGCAATTGGGAATGATTGTTGTAGAGTTTGCTGTGGCGCAGCTCTTGCACTGTTTCAACTGGAGGCTTCCCGATGATATGAATGAACAGAAACTGGACATGTCTGAAAAGAATCATGGACTTACAGTATCAAGGGCACATGAGCTCTTTGCTGTTCCAACTCCTCGCCTTCCCGTACTGTAACTCTGTAGAGGTATATTTGTATTGCTACCACTGTAATCTCTTATCACGGCACTTTAAGTATGTTCTTCGAACATAACATTTTATATCAAGGTACTTGTCAATTGAGCTGCTTTAGGGCTTTAGGGGTTTACAACATTTATCTTGTTATTAGCACGATGAAATGTTATTAGGACAACAAAACCTGTGAGATTTAAGGATGGTTTTAATGGGGGCGAAGAAGTTCTATGTAAACAAATTTAGTAATTGTTTTAATGTAATGAA | |||||||||
gi|211887992|gb|DV986670.2|DV986670 GQ0203.B3_O06 GQ020: Clean ROOTS systems -Diurnal cycle Picea glauca cDNA clone GQ0203_O06 5 ACTCTGGCTTGGAACTTTTGA EST sequence (targeted fragment marked with yellow): TGACAATTGATTATCAGATGACAAAAATATGCCACAATATATAAGCTAACATTCTATATAGGTACAGCAGGTTTCTGGAAGCCAAAAGAATTAGCAAGCTAAATCCTCCAGCCTGCAAATGGGGCTGTATTTATTCCCTATACTTCTAGATTTCTAGACACTTCTATAATATTAATGGCCATCGATGCAGCTACAAAACGTGCATCTTTGGTCTCAGCTAAGAGCCTTGACTCTCCTACTAAACTGACAGCTTAAATAAATATGCACAGGAAATGTAACACTATTTAAGAGGACATAACGTCCTGGATCACTTCTGGGTCCAAAGAAGGCATTTTGGTGAGACAGTCGTCCAGTTCAGCGAAAATAGAGAAAGAGGGCGCTTTCTGCAAAGCCGATGAATCGACTTCACATTTGCTGGGTGACGTAGAAGCAGATTCTGCACCACAGATCGTTGAGCTATTGCTGCTTCCAGAAACTTCACACTTGACATTCTCCAGAGCTTCATTGTTGGCAGTTTGTGCCATCAGACGATTTTCTGAAGAATTTTCCTGGGATAAACGCTGGCAAATTGCCTGGAGCTTTGCATCAACAGAAGATTTCAGCACAGATAACGCATTACCCGGTGATGAAAGCACATTTGGGCTACCGTTATCCGAATTTGAGAGCAAAAGATATCTCAAGTCCGGAAAATTAAGCCTTGCGTACTCACCACGTAGTTGGTAGGCTGCTGTGTCATATGCAAACGCTGCTTCTTCTGCTGTGTCAAAAGTTCCAAGCCAAAGCCTGGTTCTATTCCTAGGTAATCTGATCTCTGCTACCCATTTCCCCCAGTGCCTCTGTCTCACTCCTCTGTAGAGCTTGGCAGCCCTTGCAATACCCAGTTTTGAATCATTTCTAGC | |||||||||
gi|225916932|gb|GO368941.1|GO368941 GQ03902.SP6P1_E15 GQ039 - Stem - Dormant Picea glauca cDNA clone GQ03902_E15 3', mRNA sequen ACTCTGGCTTGGAACTTTTGA EST sequence (targeted fragment marked with yellow): TTACCATCAGTTGAAAACTTGAACGACTGTAGCAATGGTGGCATGTCAATACCTCGAGCAGCATTTGGATTTGTTGCTAGACTTGCCACTGGTCTACTTGGATTTCGAGGTTCCAAGAGCTTATCAAATACTATGGATGAAAGTTATCAGGAGCAAACTACTCTGCAGAATGGACTTGAACAGAACACTGATGGGACTGAGATGAGCAATACTGAATGCAAACAACTTACAAGAGATTCCAAGTGTCATCAATTGGAACATATTGAAGATGGTTTGACTGCTATGCCTGTAGCATCAGAGGTGACAGATTCTAAGAACAGGTTAGAATGTAGTGGCCACATAGACGAGGAAGATGTTCAAAGTTTCCAAGACAGAGTGCAAGTTTCCACAGGAGAGTATTCAACAGGCAGTATGCCTACTCGTATGAAACTCAATTCAGATCAAATGCATAACTTGTCTGTTTCTGGCAAAGATGACCAGTTCAAACACTTTGACAGTGTCAAAGACCCTCTGGACCATTACTTTCTGAATGAAACAGCTCAGAGTTCTAATGATAGAAAGTGGTCAAAGAAAGTTCAGCAAGAGTGGAGTATCCTTGAAAAAAATTTGCCTGACATGATTTATGTGCGAGTCTATGAGGATCGTATGGATTTGCTCAGGGCTGTGATTCTTGGAGCCAGTGGGTCTCCATATCAAGATGGCCTTTTCTTCTTTGATATTTATCTTCCATCTGATTACCCTCAGGCACCACCGGCAGTATACTATCATTCTCATGGGCTTAAATTGAATCCCAATTTATATGAAACTGGAAAAGTCTGCCTGAGTCTTCTGAACACTTGGACCGGCAGAGGAAATGAAATATGGGACCCCAAAATTCAAGCATT | |||||||||
gi|225912857|gb|GO363797.1|GO363797 GQ03321.SP6.r_G06 GQ033 - Terminal leader (Normalized library) Picea glauca cDNA clone GQ033 ACTCTGGCTTGGAACTTTTGA EST sequence (targeted fragment marked with yellow): AACTTGAGCTTGTGGCTCAGGAAGAACATGCCAATGGACAAGAGATTAATCACAACACTAGAAATAATATATCTGAGATCTATAGAGCGACTGTGTCTCAAACACTGGGAAGGGGGTGGTTCTATATGGCTGCAGGGCCTGTGTTAAGTGTAGTAGGGCTTGTTCTTGTCCTGTGTTTTGGAAATCATTCAATAGGTGGCCGGATCCAGCAGCACGTGAGGCAGCTGGGAAGGCAACAGCATGAGGCTATTGGGGAATCTCATATACCACAAGTGGGTCCTTCAAATGGGGTCCGCAATCATAGGAGATGGTGGATGCTCTTTCAGCGGTGAGAAACAAATTGGTTACCTATATTCATCTGGGGTCAAGCCAAAAGAGTTTATCCTTTATATTGGATAATTGGTTTGCTCATAAATCAATGTTTTGGAAACCTGAATGAATGTTCATAAGTTTCAAGTCAGAGATAGCACATGTGTCTCTTCCAGAACTTTTGTGTTTTCTAGTGATCTTAATGATTGCTACCCTGACTTTGTTCCGTCTTATAAATTTTTACTTATGTGTTCACTTATGGAGGAGAATGTGAGAGAGAGATTGTTTTCTGTACTTTGCCTTGTTCCTCATTATATGTACTTGTGTATAAAATATGCGTTTTCAGATAAACTCTACATGGTTTCTATTGTAAAAAA | |||||||||
gi|292508855|gb|GW731648.1|GW731648 WS04816.CR_B12 WS-CRD-33 Picea glauca cDNA clone WS04816_B12 3', mRNA sequence ACTCTGGCTTGGAACTTTTGA EST sequence (targeted fragment marked with yellow): GGGGGGCACACGTCTTCTGATTAACTTATGGGCAATTGGAAGGAACCCAAACTCATGGGAGGATGCCGAAAGTTTCAAGCCAGAGAGATTCATGGAAGATGGCTCCGTCGGTTCGAAGGTGGAAAATTTTGAGTCGATTCCTTTCGGAGCAGGCAGAAGAGGATGTCCCGGACGGGAATTGGCAACACGGACTTTAGAGTTTGTGGTGGCGCAGCTTTTGCAATGTTTCAACTGGAAGCTTCCGGACGAGATTAGTTGCGGCCAGGAATTGGACATGACTGAAGGGATTAATGGGCCCACAATACCCAGGAAGCATGAACTCTTCGCTGTTCCAACTCCTCGCCTTCCCATTCCATTATTATGTTGATCTTGCTATTTAAGACACACCAAGTAGAGCCAGTTGAAATAACTTATGTTAGGATTAGGTTTTCATATGTATTTAATAATAAGATTAGTTCTGCCTTGTTTCGACTGGCTTGGGCCCGGCCAGCCAGCCTTGTTTATGAGTAGTATGGTTATGCAGGGCTTCCTAATAATTGATTTTCCCTGTTTTCTTTATTAAAAAAAAAAAAAAAA | |||||||||