| mature miRNA: ACTTTAAATGTGTGTCCGTAT species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88200314|gb|CI200164.1|CI200164 CI200164 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): ATCGGAAAAAAATGTCACAATAGAAGGGATTTACGGGTAAAGCCACCAGTGACCAAGAGTCCTGACAGTTTGCTCGTCATTTACTACAAATCTATTCTTGATCTCAATATGGAGGTACATCTAAAGTCGTATCCGAAAACTTTAACAAGCACTTTACAGATAATCGATGGTATAAAACTTCTGGAGTTCAAACAAAGAGAATGGGGGTTCTCACGCAGACTTGTGAGGAAAAGGGAGCAGTGTCCCTGTTCTTTACCATCAAGCAATGATCCATGGAACAGAGGCTCCTAAATTAGCTGCTTTCGGATTTCAGTGCATTACTGAGCCAGTCCAAACCTTCAAAAAGGCCCTCTCCTTTTATGGCAGATGTTTTGAAAATCGCCCATTGACGGATCTTAAT | |||||||||
gi|88479936|gb|CI417207.1|CI417207 CI417207 Oryza sativa (japonica cultivar-group) leaf of seedling gamma-irradiated(45Gy), immi ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): GGAAGAAATGACTAGTGGATAATGTTCCCAAGCATTCGTATCACCAGAGTAAAAGAATATGTAGAAAACGACATGAAACTCGGCGACAAGGTGGAAATTAGGCGTGTTCAATCATCGGAAAAAAATGTCACAATAGAAGGGATTTACGGGTAAAGCCACCAGTGACCAAGAGTCCTGACAGTTTGCTCGTCATCTTCTACAAATCTATTCTTGATCTCAATATGGAGGTACATCTAAAGTCGTATCCGAAAACTTTAACAAGCACTTTACAGATAATCGATGGTATAAAACTTCTGGAGTTAAAACCAAAGAGAATGGGGGTTCTCACGCAGACTTGTGAGGAAAAGGGAGCAGTGTCCCTGTTCTTTACCATCAAGCCATGATCCATGGAACAGAGGCTCCTAAATT | |||||||||
gi|89192071|gb|CI393428.1|CI393428 CI393428 Oryza sativa (japonica cultivar-group) seed Oryza sativa Japonica Group cDNA clone J ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): GACTAACAAATTCTATAAATTGGATATTTTGCTCACATCGCTGCAACTCTTTACATAGCTGACAAACTGATGGATGACGATCACTAATTTGCTCTCAAAATCGAAAGACTTGCCAAAGGAACGCTTTACAAATAGGGCAGTTCAATTCGATGCTGCAATCAAAATTGTGATTCTCACTTGGATGTGTTCTCTGTTATATACATATATGTACTACCGGAGAACGAAAATAGTGAATGAACGAGATGGAATGGATCTTTCTTCTGCCGCGGTGAAGATGGACATACATTCAAAGTCCAAAG | |||||||||
gi|218488830|gb|FG960685.1|FG960685 MA_PA64s_08496 Mature embryo cDNA Library of PA64s Oryza sativa Indica Group cDNA 5', mRNA s ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): TGTCACAATAGAAGGGATTACGGGTAAGCCACCAGTGACCAAGAGCCTGACAGTTGTCGTCATTACTACAAATCTATTCTTGGATCTCAATATGGAGGTACATCTAAAGTCGTATCCGAAAACTTAACAAGCACTTTACAGATAATCGATGGTATAAGACTTCTGGAGTTAAAACAAAGAGAATGGGGGTTCTCACGCAGACTTGTGAGGAAAAGGGAGCAGTGTCCCTGTTCTTTACCATCAATAAATGATCCATGGAACAGATGCTCCTAAATTAGCTGCTTTTGGATTTCAGTGCATTACTGAGCCTGCAGCAAGAATCAAACCAGGCTTTTGTAAGTTAATTCCATCAGATATTCCCATATGCATTCATCATGGAGGAATTGCAGAATAATGCGTTGTAGAACAGAACTGGAAGAAATGTAACACGGGAGCTCAGTCTAATCATATTCACAGGAAAACAAATAGTCCAGTACTCACGTCACTACAAGAAACAGGTTAGTACAGGATTTTAGCAGCATAAACACT | |||||||||
gi|86503740|gb|CI146373.1|CI146373 CI146373 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): GGTAAGATGAAAAAAAGAAGAGAACTTCTAAAGTCAATCTTGGAATGGCAGCACAATCCATTCGCCTCACTCGCACTTGCCATTCCACTCCAACTCTCCTCTACCTGCAGCGAGCTGCCATTCCCCTCCAACTCCCCTCTACCTGTAGCACATTTTTAGCAGCAGATTGGTCATATCATCAAAACATCAATCTATTCATGAACCTGCAAGGCAAATAGCTTAAGGCTGTGTTTAGATCCAGGGGTGAAAATTTTTGTCGTGACACATCGGATATACGGACACACATTTGAAGTACTAAACGTAGTCTAATAATAAAACAAATCATAGATTCCGCCTGTAAACTGCGAGACAAATTTATTAAGCCTAATTAATCCATCATTAGCAAATGTTTACTGTAGCACCACATTGTCAAATCATGGAGCAATTAGGCT | |||||||||
gi|33799332|gb|CF325525.1|CF325525 JMT1--03-H15.g1 AtJMT-overexpressing transgenic rice lambda phage cDNA library (JMT1) Oryza s ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): GCACGAGGCTAGTCTCGGTTTTTTTTTTTTTTTTTTTGGTTTACTCCCAGTCACAGTCTTCATGGTTGAACCAACCAACTGCTCGAACTATGACTTTGGGTGTGTTAGTTACGCGTAAAATTTGAACGTGTCACATCGGATATACGGATACACATTTAAAGTATTAAACGTAATCTAATAACAAAATAAATTAAAGAATCCGTATATAAACCGCAAGACGAATTTATTAAGCCTAATTAATCCATCATTAGAAAATGTTTATTGTAGCATCACATTGTCAAATCATGGCGCAATTAGTCTTAAAAGTTTCGTCTCGCATTTTACACGCAATCTGTGTAATTAGTTGTTTTTTTATTTATATTTAATACTTTATGCATGTGTCCAAACA | |||||||||
gi|88222215|gb|CI222171.1|CI222171 CI222171 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) and mixed s ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): TTTTTAAAGAAATAAGCAATTGTCAAGCTTCGAAATCCACACGGCAATCGGCAACCACCAGACATTTGGTGTTAACTCAAAAGATAAACATATGGTAGCACAATCTTGAATTATCGGTAAGATGAAAAAAAGAAGAGAACTTCTAAAGTCAATCTTGAATGGCAGCACAATCCATTCGCCTCACTCGCACTTGCCATTCCACTCCAACTCTCCTCTACCTGCAGCGAGCTGCCATTCCCCTCCAACTCCCCTCTACCTGTAGCACATTTTTAGCAGCAGATTGGTCATATCATCAAAACATCAATCTATTCATGAACCTGCAAGGCAAATTGCTTTAGGCTGTGTTTAGATCCAGGGGTGAAAATTTTTGTCGTGACACATCGGATATACGGACACACATTTGAAGTACTAAACGTAGTCTAATAAATAAAACAAATCATAGATTCCGCCTGTAAACTGCGAGACAAATTTATTAAGCCTAATTAATCCATCATTAGCAAATGTTTACT | |||||||||
gi|117244357|gb|CT849703.1|CT849703 CT849703 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): ATGACATACGACGGGTTCCTTAATTAGGGCTTACTCGGAGTACGCCTTAGCAGCCTGAAGCCAATAAATATATGTCCTTCCAATCATAACTATTAACGTTTAGAATTAAAACTTCTACTGTCAATTTTCTATTAAAACAAGTTTGCAAAATCTAATATCTAATAATTTTATGATATCATGACAGTATTATTTTACAAATATACTCTTACGATATTTTTAATTTTAAACTAAGCATTCACAAAGTTAATAATGGTCAAAGTTTCGAATTTTGGCCATTTTTTTGTCATAAATTATTAAATATGTATGAGCGGATTGCGGATCCAGTAATTAATTGTAACTTCAGTTTTCTTAACATGTGCCCGAAGTGGTATTAAGCCAAAATGCCATTAGAAATGCTTCATAGTAGTGATAGCAAATTAGGGCATGTTTAGTTGGCAAAAAATTTTGCCCCTACATATCATATCAAATATACGGACACACATTTAAAGTATTAAACGTAGTCTTCGCCAGGAAACTGCGGGACGAATTTATTAAGCCTAATTAATACGTCATTAGTAATGTTTACTGTAGCACCACATTGTCAATTCATGGCACAAAGTAGGCTTAAAAGATTCGTCTCATAATTTCCTAGCGAACTGTGTAATTGGTTTTTTCTACATTTAATACTCTATACATGTGCCCAAACATTCGATGTGATAGCGTGAAAATTTTTATTTGAAAACTAAGCATGCCCTTAGAAACGAATATAGTAAAATAAATATTTTAACTAGTCTTATCCAAGTCAATCGAGACAAAGTTAGTTTGCGTTATTCATTGTAAGGTCAAGTCTATCCTAGAATAAGATAAAAAAAAAAAAAA | |||||||||
gi|86844173|gb|CI337582.1|CI337582 CI337582 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): ATAATTTGGATATTTTGTTCACATCGGTGTAACTCTTTACATAGTGACAAACTGATGGATGAGGATCAATACTTTGGTCTCAAAATCCAAAGATTTGGCAAAGGAACGCTTTACAAATAGGGCAGTTCAACTTCGCGTGCTGCAATCCAAATTGTGATTCTCACTTGGATGTGTTCTCTGTTATATAAATATTTGTACTACCGAAGAAAGAAAATACTGAGGTGAACGAGATGGAATGGATCTTTCTTTTGGCGGGGTGAATATGGACATACATTCAAAGTCCAACGCTGAAAGCAAACAAGTCCGGCTCTCATTGCACAGGGCTACCTCCAGTTTAACCTCTCCAAAGACCTCTCTAGCAGATAGTACAACGGAGACTTGAGAGGGGGAGGGAGATGCTGAAGTTATGCAGCTCCCAGGTTCGCAAACCGCATAGGA | |||||||||
gi|29634680|gb|CB639689.1|CB639689 OSJNEa11J17.f OSJNEa Oryza sativa Japonica Group cDNA clone OSJNEa11J17 5', mRNA sequence ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): CTTCTCCCACTTCACTGGAGTATCCATGCCAGCTAAGCGAGTTGTACAAGGCAAGCAGTGGATCATAGAGATGCACCAGTAGGTATATTTTTGCGATTTTTCTACTGTTCTAGTTTTTTGCGAATTTTTTTTTTTTAAACACCACCAACAAACCCGGTGTATTTTGATTTTTTTTTAAGTTGGATCGGAATGTTGCATCGGGTGTGTTGATGATGTTTCACTTTTTTTTCTTCAAGTTCTTGTGGATCTATTTAATGTTTCAAATTATGAAATCTTAATGTTCCCTGTGTGAGAGTGAAATGTTTAACTATGATTAAACTGTTTTCTATAATATGGTGAAACATCGCTCATATTTTTACTGGTATCCTCGATTTTATTAGAGAACACAGCCGGATGCTTGCTTGCAGAACGTGTGCCCCGGGTAAGAGGTTATCTGTATAGAAAAATCAGTCAATTGACTCCTGCTAGTGGACATACTTTGAGATGGACGACCATGATTGTGATATTGGTGACCGGGGTGAAAAGTTTTTACATGTCATATTAGATATACGGACACACATTTGAAGTATTAAACGTAGTCTAATAACAAAACAAATTACATATTCCGCCTG | |||||||||
gi|86901156|gb|CI306345.1|CI306345 CI306345 Oryza sativa (japonica cultivar-group) heat treated callus Oryza sativa Japonica Gro ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): AACGCGTTATTAATACGTAATCAGCAAGTCTTAGGGCATGTTTAGATGGCAAACAAAAATTACCCCAACATATCGTATCGGATGTACAAACACACATTTAAAATATTAAACGTAGTGTAATAATAAAATTTTGCCTATAAACTGCGAGACGAATTTATTAAGCCTAATTAACTTGTCATTAGTAAATGTTTACGGTAGCACCACATTTTTTATCAAATAATGACGCAATTAGGCTTAAAAGATTCGTCTTGCAATTTACTGGCGAACTATGTAATTATTTTTTTCTACATTTAATACTTCATGCATGTATCTGAACATTCAATGTGACAGCGTGAAAAATTTTATTTGGGAATTAAACATATCCTTAATCATCAGCACTTC | |||||||||
gi|38478495|gb|CF962628.1|CF962628 7832rsiced_11204.y1 Oryza sativa cv. LYP9 trefoil whole plant cDNA library Oryza sativa Indic ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): CGATGTTCATGCAACCAGATTGGGATGAAAAGCTCAAGTCCAAGTGAAATTCCGTATCATCAAGAGTTGATGCCGCCGAATGGAACTCTTACATTCGGGGAGTATTCAGAAAGATTGGTGAACAAGTATTACCAGGGAAAGACATGAAACACTACAATACGCATGCAATTTTCAATTGTTGTTTGTCCGTTTCGTACTAGCAGTGAAATCGTCAGTGCAACCTGGACAAACTTAACTGTTAGGTTCTCTGCGTGTGTTTTGAACTGGAGATTCGAGCAACCAATCATAGAAAAAATGTGTCTACTGTAATTGTTTTTTCCTTACGATAAAAGCAACAACACCGGTGGCAGCGTCACCTTTTCTTGGTTTAGTTTCTACTACACTCATCTTCACCATACTTTGATTGAGTTTCCTCTGTAGTATGGGGGTGCTTAGATGTATGAGTGTAAAGTTTTGGTGTCACATCGGATAAGTTTGGGTGTGTCACATCGGATATACGGACACACATTTAATGTAAAACAAAAAAAAAAAAA | |||||||||
gi|88271526|gb|CI387579.1|CI387579 CI387579 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): CTATAAATTGGATATTTTGCTCACATCGCTGCAACTCTTTACATAGTGACAAACTGATGGATGACGATCACTAATTTGCTCTCAAAATCCAAAGACTTGCCAAAGGAACGCTTTACAAATAGGGCAGTTCAATTCGATGCTGCAATCAAAATTGTGATTCTCACTTGCATGTGTTCTCTGTTATATAAATATATGTACTACCGCAGAACGAAAATACTGAATGAACGAGATGGAATGGATCTTTCTTCTGCGCGGTGAAGATGGACATACATTCAAAGTCCAAAGCTGAAAGCAAACAAGTCCGGCTCTCATTGCACAGGGCTACCTCCAGCTTCAAACTCTCCAAAGCCCTCTCTAGCACATAGTACAACGGAGACTTGAGAGGGGGAGGGAGATGCTGAAGTTATGCAGCTCCCAGGTTTCGCCAACCGCATAGGAGTAAT | |||||||||
gi|218493480|gb|FG952539.1|FG952539 MA_PA64s_00350 Mature embryo cDNA Library of PA64s Oryza sativa Indica Group cDNA 5', mRNA s ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): ATCCGAGTTTTCTTTTTTTGTTTTTTTTTTCGAAATAGAATATGTCATCAATAGAAGGGATTTACGGGTAAAGCCACCAGTGACCAAGAGTCCTGACAGTTTGCTCGTCATTTTCTACAAATCTATTCTTGATTCTCAATATGGAGGTACATCTAAAGTCGTATCCGAAAACTTTAACATCGCACTTTACAGATAATCGATGGTATAAAACTTCTGGAGTTAAAACAACAGTAGAATGGGGGTTCTCACGCAGCACTTGTGAGGAAAAGGGATGCAGTGTCCCTGTTCTTTACCATCAATAAATGATCCATGGAACAGATGCTCCTAAATTATCTGCTTTTGGATTTCAGTGCATTACTGAGCCAGTCCAAACCTTTCAAAAAGGCCCTCTCCTTTTATGGCAGATGTTGTGAAAATCGCCCATTGACGGCTCCTTAATCTTGTGGAGTTCTAATGATTCCGTTATGGCAGCATCATCAAGTGCACCTGGAAGATCCTGTGAATTCGCATATACAAGGA | |||||||||
gi|29633417|gb|CB638426.1|CB638426 OSJNEa06L05.r OSJNEa Oryza sativa Japonica Group cDNA clone OSJNEa06L05 3', mRNA sequence ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): AGTGAAAACGCCTCGAATGTTGATCGTTCGACCTTCGCGATGTTCATGCAACCAGATTGGGATGAAAAGCTCAAGTTTCCAAGTGAAATTCCGTATCATCAAGAGTTGATCCCACCGAATGGAACTCTTACATTCGGGGAGTATTCAGAAAGATTGGTGAACAAGTATTACCAGGGAAAGACATGAAACACTACAATACGCATGCAATTTTCAATTGTTGTTTGTCCGTTTCGTACTAGCAGTGAAATCGTCAGTGCAACCTGGACAAACTTAACTGTTAGGTTCTCTGCGTGTGTTTTGAACTGGAGATTCGAGCAACCAATCATAGAAAAAATGTGTCTACTGTAATTGTTTTTTCCTTACGATAAAAGCAACAACACCGGTGGCAGCGTCACCTTTTCTTGGTTCAGTTTCCACTACACTCATCTTCACCATACTTGATTGAGTTTCCTCTGTAGTATGGGGGTGCTTAGATCTATGAGTGTAAAGTTTTGGTGTCACATCGGATAAGTTTGGGTGTGTCACATCGGATATACGGACACACATTTAATGTATTAAACATAGACTAATAACAAAACAAATTACATTTTCATTTGC | |||||||||
gi|44667588|gb|CR281022.1|CR281022 CR281022 Oryza sativa library (Han B) Oryza sativa cDNA clone y777d12p3, mRNA sequence ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): TATCTTATTATTTTTTTTTTTTATTATATTTTTTTATCTTTTTTTTTTTTATTTTTTTTTTTTTTTATTTTTTTTTTTTTTTACTCCTCTCCTGCACGGATCAAATTAACTCCCAGCTCATGCTCCATAAATCAGTGACATATACAGATTGACATGTATACGGACCACATGTAAAGTTCCACCAAGGGAAACGCTGTACAGACAACCAAAGAAAACTCTGTGTATTCCCGGACGAGCGCATGACTCTGACTACGAGTATCCATTTTTTACGACGCGCCATCTTCTTCACAATATATCTAATATCTAGCCAAACTGTGTAATCTGTTTAAACCCATTAGTTTCGTGCCATTATCTGCATATATGCTAATGGAAGATCGCAAGCACCGAATCAATCGAGATCAGTAGTCTCTTCTAGCTGACAGGAAGACCTGGACCACTTGGCAACCCGGCCGTCCCAGGATGAGCTGACAAGCATAGGGTCGACGGGATGCCCACTGCAGTCTCGAATTGCCCGCTGATAAATTCCCTTGAGAATTGCGCACTGTGAATCGCGCGCCACCATTTAG | |||||||||
gi|29671937|gb|CB668212.1|CB668212 OSJNEd15P09.r OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd15P09 3', mRNA sequence ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): ACACTTATGATTAATCTCCAAAATTGAAACTCTATAGTTATGGTTAACTTGGCAGATTGATTACACATCATGGTAACATCTAAGCCTTGTAATACCATAATTCTAGCAAGTCATATGCGTGGTTCATCTTCATGTATATACGATTTCATATCGATGCTCTCATGTAATGTCTGGGAAATTTGAAGTGCCAAATTGTTACTTTTCTGAGTCGAAAGATATGATCAGTTAAGCCTGATGAACAGCTGATTCAGTAGTTGGACCCTCCAATTTGTTGCAGCATTTCAGCACTGGTCAAGACTAATCTGTGATTTACAAGTTGAGAATTTGAGTAGATCCCCATCCTGTTTACCTTCAAATACTCTGAAATTTTTCTTTCTGATGTCGCAATCCAATGTCCATGTCGCTGCAAGACAGGGTGGCTTGGAAGTCAGTCATCTCGCTGTCAGTTGTAGCGTGGGGGTGTACTGGTGTTGCTCACAGTTTGATATCATCATCATGGCCATCACACAACATGCTTATTCCTGCACGGTTTAGCAAGCTTTAATTGACCACCATCATCGCTTGCTGTTTGATCATTAGTACTACATCAATTGGAGTCCAAATTCCAAAATGTTTGGTTATAATTGCTTCGAGGCAATTAAGATGTTTATGAGGGTAAATTAAGGACTTGTTTAGTTGGGGAAAATTTTTATATTTGATTGTCACATTGGATATACGGACACACATTTGAAGTATTAAATGTAATCTAATAACACAGTAAATTATAGATTCCGCCTGTAAACTGCTTGGTGGATTTATTGAGCCTAATTAATCCGTTATTAGTAAAAAAAAAGAAAAAAAAACTCGAGGGGGGGCCCGGTACCCAGCTTTGTC | |||||||||
gi|58692598|gb|CK081285.1|CK081285 80729rsicen_6556.y1 Oryza sativa cv. LYP9 booting whole plant cDNA library Oryza sativa Indic ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): AGTGAGTGAATAATGAAGGAATCCCGGGGGTGGTATTTGCAAAAATGATTTCGTCATTTTATTTTGGGGGTTAGATTAGCATTTGCTTGACAGCCGGCCAGGCCTTACTATCGGAAGCGTTTAAATTAAAGATTTGTCTTGATTATCTACACTCGCAGTTGAGCCGTAGCCAATTTTGAATTTTAGAAACAATTTAGGTTATTTTATCGCTTTTGTCACTCAGTTTTGACTTGTGACCGGTAAGAGTAGAAGCATAAAATTCTCGTGTTAAAAATGTATTTTTCATAACATTGATCACGTGTCTTCATTTGTTTGAAAGATCCGATTGCCTGTCTATACTATAAGAATGTTGATAATGGCCATGTTTAGGTGTTTATTTGTTTTGGCAAAAAAAATTGACGTATACGGACACACAATTAAAGTATTAAATGTAGACTAATAAGCCTAATTAATCTATCATTAGTTGTAGCATCACATTATCAAATTATGACGTAATTAGACTCAAAAGATTCATCTCTTAATTTACATGCAAACTGTGGAATTGTTTTTTTCGTCCATATTTAATGC | |||||||||
gi|88304395|gb|CI515668.1|CI515668 CI515668 Oryza sativa (japonica cultivar-group) 2 nuclei stage pistil Oryza sativa Japonica G ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): AAGGTGGAAATTAGGCGTGTCCAATCATCGGAAAAAAATGTCACAATAGAAGGGATCTACGGGTAAAGCCACCAGTGACCAAGAGTCCTGACAGTTTGCTCGTCATTTTCTACAAATCTATTCTTGATCTCAATATGGAGGTACATCTAAAGTCCTATCCGAAAACTTTAACAAGCACTTTACAGATAATCGATGGTATAAAACTTCTGGAGTTAAAACAAAGAGAATGGGGGTTCTCACGCACACTTGTGAGGAAAAGGGAGCAGTGTCCCTGTTCTTTACCATCAAGCAATGATCCATGGAACAGAGGCTCCTAAATTAGGTGCTTTTGGATTTCAGTGCATTACTGAGCCATCCAAACCCTTCAAAAAGGCCCTCTCCTTTTATGGCAGATGTTTTGAAAAT | |||||||||
gi|44673568|gb|CR287002.1|CR287002 CR287002 Oryza sativa library (Han B) Oryza sativa cDNA clone p751h10p3, mRNA sequence ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): TCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTGAACAAATGAAAATGATTCTGATTTTGCTATTCATTTGTCAAATATAAATACAGTATAATTGCAGTGTAATCGCATTGTAACTTGCACAAATGAAAATGATTCTACAATCCAGAATCCACAATATCCCTTAAGCCATAGGGACTTCATACATCATAAAGCTTCCGTTGGTCAATGGGAATGTGATGCTCATTAAGGGGGTGTTTAGATCCATGGGTGTAAAATTTTGGCGTGTCACATCGGATATACGGACACACATTTGAAGTACTAAACGTAGACTAATAACAAAACAAATTACAGATTCCGCCTGTAAACCGCGAGACGAATTTATTAAGCCTAATTA | |||||||||
gi|66932230|gb|CX119078.1|CX119078 POLLNM01 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): TTTTATGATTTAGGGTCACGGATTAGATTTTGATCGCTTTTGAGGGTCACAAAGTGAACTTATTCCTTTGACATTTGCTGAGACCTACAGGTTGGTATGTTGCGCGGTAGTTCGTGCACCGCAAATAGAAAATGACAAAAGAAACACCACCACCGTGAATGCCAGAAAACAATGAGTGTGATGAGTAAGGACGAGACGAGGGAATCTGAAGTTGGGCCGCCCCTTCTCATTCTAGCTTAAGGCCTTGTTTACTCGGAGAAAATTTTTGGGTTTGGTTGTCACATCGGATATACAGACACACATTTAAAGTATCAAACGTAGTATAATAATAAAACAAATTACAGATTCTGTCAGAAAACTGCGAGACGAATTTATTAAGCCTAATTAATCCGTCTTATTAAGCCTAATTAATCCATCATTAGCAAATGTTTACTGTANNACCACATTGTCAAATCATGGCGTAATTAGGCTTAAAAGATTTGTCTCGCCCCCTACACACAAACTGTATAATTGGTTTTTTTCTTATCCACATTTAATACTCTATACATATTTCTAAACATTTTGATTGATGGGTGAAATGTTTTTGATTTGGGAACT | |||||||||
gi|86907665|gb|CI296621.1|CI296621 CI296621 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): TGAAATTTTTCTTTCTGATGTCGCAATCCAATGTCCATGTCGCTGCAAGACAGGGTGGCTTGGAAGTCAGTCATCTCGCTGTCAGTTGTAGCGTGGGGGTGTACTGGTGTTGCTCACAGTTTGATATCATCATCATGGCCATCACACAACATGCTTATTCCTGCACGGTTTAGCAAGCTTTAATTGACCACCATCATCGCTTGCTGTTTGATCATTAGTACTACATCAATTGGAGTCCAAATTCCAAAATGTTTGGTTATAATTGCTTCGAGGCAATTAAGATGTTTATGAGGGTAAATTAAGGACTTGTTTAGTTGGGGAAAATTTTTATATTTGATTGTCACATTGGATATACGGACACACATTTGAAGTATTAAATGTAATCTAATAACA | |||||||||
gi|88319347|gb|CI515808.1|CI515808 CI515808 Oryza sativa (japonica cultivar-group) 2 nuclei stage pistil Oryza sativa Japonica G ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): AAGGTGGAAATTAGGCGTGTTCAATCATCGGAAAAAAATGTCACAATAGAAGGGATTTACGGGTAAAGCCACCAGTGACCAAGAGTCCTGACAGTTTGCTCGTCATTTCCTACAAATCTATTCTTGATCTCAATATGGAGGTACATCTAAAGTCGTATCCGAAAACTTTAACAAGCACTTTACAGATAATCGATGGTATAAAACTTCTGGAGTTAAAACAAAGAGAATGGGGGTTCTCACGCAGACTTGTGAGGAAAAGGGAGCAGTGTCCCTGTTCTTTACCATCAAGCAATGATCCATGGAACAGAGGCTCCTAAATTAGCTGCTTTTGGATTTCAGCTGCATTACTGAGCCAGTCCAAACCTTCAAAAAGGGCCTCCCCTTTTATGGNACATGTTTTGAAAATC | |||||||||
gi|88728229|gb|CI751739.1|CI751739 CI751739 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): GTTTCGCCCTGTTTTTAATAATATTGAGCTAAACTTCACCTGTGATCAACGATTTATTGGTCCCAGTTTATATAATTTGCCACACCTTTAACAAATTAGCTATAAAACTACTTAAAACACAATTTAAAATGCCATAATCCGGTAAATACTTTGTTTCAAATGGCCCTAGGCCTTTGTTCTTTTATTTTTCAGATTATTGAAAATGAATTATCTGCCCCATACTTTAAAAGATATTTTTTTCTTAAAAAACACTTTTTCCTACTATATTGTTTAGACCATTTNGTTTTAAATTATCTGTTAAGTTTATTTTTATATATTAATTATTTTTATAATGAAGGCCATGTTTAGTTCGTGTGCCAAAATTTTTTTGAAGTACACGGATACACATTTAAAGTATTAACTA | |||||||||
gi|88518011|gb|CI445564.1|CI445564 CI445564 Oryza sativa (japonica cultivar-group) 4th leaf leaf 1mM ACC(1-aminocyclopropane-1-c ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): AGAGCAAGTAACTAACAAATTCTATAAATTGGATATTTTGCTCACATCGCTGCAACTCTTTACATAGTGACAAACTGATGGATGACGATCACTAATTTGCTCTCAAAATCCAAAGACTTGCCAAAGGAACGCTTTACAAATAGGGCAGTTCAATTCGATGCTGCAATCAAAATTGTGATTCTCACTTGCATGTGTTCTCTGTTATATAAATATATGTACTACCGCAGAACGAAAATACTGAATGAACGAGATGGAATGGATCTTTCTTCTGCCGCGGTGAAGATGGACATACATTCAAAGTCCAAAGCTGAAAGCAAACAAGTCCGGCTCTCATTGCACAGGGCTACCTCCAGCTTCAAACTCTCCAAAGCCCTCTCTAGCACATAGTACAACGGAGACTTGAGAGGCGGAGGGAGATGCTGAAGTTATGCAG | |||||||||
gi|117244965|gb|CT849666.1|CT849666 CT849666 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): AAATCTACATGATTTAGCATCGGTGTCGGTATAGCTACAAGATATCGTAAGCTTAGCTTTTGATCATGAGCCTTGTTGCGACTAATAGGAAGGTTCATCAGTGATGAAATGAATAGTGAGGCTTCGTTCTGGCATCCCTAGGGGGCGATCTCGTCTGTGTCTCTTTGTTGGTCTAGCGGCGGTCGGTCACGCTTAACGGCGGTTGATCCGGTGCTAGCCTTCTCCTGGGATTATGTGTTGGCGATGTCGGTGTGTGGGTGGTTGTATATTTTTTCCTTTTTCCTGGTTACGACCCTCCAGGGTTGTAATCTTGTAATTTTTTTCCTGCTCTATCAATAGAACTTCGCACCGTCTCGTGCAAGTCGTTCAAAAAGAATAGTGAGGTTTCGTGAAGAACAGTTGTTGGGAAGAGGAAGAATAAGAGAGCAATGCTTTACATATTTCAAAAAGTGTTTCGAAAAACATGCTTCAAAATTGGATATTTTTTCCTTGTGTAGTTCTGAGGCCTTTTTTATCTGGGAAAAATTTTTAGGATTGATTGTCACATCGGATATACGGACGCACATTTGAAGTATTAAACGTAGTCTAATAACAAAATAAATTACATATTCCACATATAAACTGTGAGATGAATTTATTAAACTAATTAATCTGTTATTAGCAAATGTTTACTGTAGTACCACATTATCAAATCATGGAGTAATTAGACTTAAAAGATTCGTCTCACAATTTACACACAATCTGTATAATTACTTTTTTTTATATATTTAATACTCTATGCATGTGTCCAATCGAATATTCGATGTGACGCGGTGAAAAGTTTTTGTCTGGGAAGACCTAACTATATGCATGTGCCATTATATTGCAGGGTGACTTGCAGTGGGAGCGAATGCCGGCGCTGCTGAAACGGTGGTGCAGCAGCAGGTGGGATGACGACGACGAACAAGCTTGTGCGCGGCTGCACGAGTTGATCGAGATGCCTCTGCGAGGGATGGAGATGGCCTGCACCCACATGCTGCAGCAGCCATGTTGGCCTAACACTAACACTATCAGCAGCATCTGCACACCAACATGGCTGCAGCACGCTACCGACCATGTACGCCTGGCTTTGCTCACAAAACGCATTCCCAGCTGCAGCAACACAGGCACAGGCAGCATGGAGATGGCCAAACTAGCGCCGGTCTCTGTTGGTGCTCTGGAGCAGCAGCAGCAGCTGGCTCCTTTCCTCTTCTTCTTATGCTTGGATCTCCTCCTCCAAGGATCTCATCCGGCGCCCCAACGTCCACCTAAGCTGCTGCTGTCTGTGTCTGCACACTCAGACGCTGCTGCCTCCCAAGTGAAGGTGATCCCAGCAGCACAACAAAAGACGACGATGAAGAGCAACCGGAGC | |||||||||
gi|88484894|gb|CI422165.1|CI422165 CI422165 Oryza sativa (japonica cultivar-group) leaf of seedling 50ppm CuSO4 for 3 days Oryza ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): GGCATACAATATTTATGTATATATGCTTAGAAAATTTTCTGTTCATATTCAAATTGATGGCATATATAGGGCCTGTTTAGTTGGCAAAAAAATTTGCCCCTACATGTCACATCGGATATACGGACACACATTTAAAGTATTAAACGTAGTCTAATAACAAAACAAATTACAGATTCTGCCAGAAAACTTCGAGACGAATTTATCAAGCCTAATTAATCCGTCATCAACAAATGTTTATTGTAGCACCACATTATCAAATCCTGGCGCAATTAAGCTTAAAAGATTCATCTCGCAATTTCCTGTCGAACTATGTAATTGGTTTTTTTTTCTACATTTAACACTATGCATGTGTCCAAACATTCGATGTGACAGCGTGAAAAATTTTGTTTGAAAACTAAACAGGCCCATATTTACATGTCGACTGGTACTGGTACA | |||||||||
gi|86511016|gb|CI153649.1|CI153649 CI153649 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): GAAAAAAATGTCACAATAGAAGGGATTTACGGGTAAAGCCACCAGTGACCAAGAGTCCTGACAGTTGCTCGTCATTTTCTACAAATCTATTCTTGATCTCAATATGGAGGTACATCTAAAGTCGTATCCGAAAACTTTAACAAGCACCTTACAGATAATCGATGGTATAAAACTTCTGGAGTTAAAACAAAGAGAATGGGGGTTCTCACGCAGACTTGTGAGGAAAAGGGAGCAGTGTCCCTGTTCTTTACCATCAAGCAATGATCCATGGAACAGAGGCTCCTAAATTAGCTGCTTTTGGATTTCAGTGCATTACTGAGCCAGTCCAAACCTTCAAAAAGGCCCTCTCCTTTTATGGCAGATGTTTTGAAAATCGCCCATTGACGGCTCTTAATCTTGTGGAGTTCTAATGATTCCGTTATGGCAGCATCATCAAGTGCACCTGGAAGATCCTGTTTATTCGCATATACAAGGACAACTGCACCTTTTAGCTCATCCTCCTCAAGGATAGCATGAAACTCTTCTTTAGCCGTTACAAGCCTATCTGTAT | |||||||||
gi|89162128|gb|CI103664.1|CI103664 CI103664 Oryza sativa (japonica cultivar-group) Panicles one day after flowering Oryza sativa ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): TAGGTGGAAATTAGGCGTGTTCAATCATCGGAAAAAAATGTCACAATAGAAGGGATTTACGGGTAAAGCCACCAGTGACCAAGAGTCCTGACAGTTTGCTCGTCATTTTCTACAAATCTATTCTTGATCTCAATATGGAGGTACATCTAAAGTCGTATCCGAAAACTTTAACAAGCACTTTACAGATNATCGATGGTATAAAACTTCTGGAGTTAAAACAAAGAGAATGGGGGTTCTCACGCAGACTTGTGAGGAAAAGGGAGCAGTGTCCCTGTTCTTTACCATCAAGCAATGATCCATGGAACAGAGGCTCCTAAATTAGCTGCTTTTGGATTTCAGTGCATTACTGAGCCAGTCCAAACCTTCAAAAAGGCCCTCTCCTTTTATGGCAGATGTTTTGAAAATCGCCCATTGACGGCTCTTAATCTTGTGGAGTTCTAATGATTCCGTTATGGCAGCATCATCAAGTGCACCTGGAAGATCCTGTTTATTCGCATATA | |||||||||
gi|88764810|gb|CI773928.1|CI773928 CI773928 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): TTGTATCATATATATGACAGATAGAGTAAACATTAAAATGCCACTATTGTACTCTCTCTGTCACATGTCAACTCGATATAATCTAATACTCCCTCTGTTCCTAAATATAAAAGATTTTGGTGAGATGTGACATATACTAATACAACGAATCTAAATAGACTTATGTCATATGAAACCAAAATCCCTTATATTTAGGGACGGAGGGAGTACTACATATATGGACAGATCTGTCTACATACATAGGCTATGTTTAGATCCAGGGGTGAAAAGTTTTAGTGTGTCACATCGGATATACGGACACACGTTTGAAGTATTAAACGTATACTAATAACAAAACAAATTACAAATTTGCTGTAAACTGCGAGACGAATTTATTAAGCCTAATT | |||||||||
gi|88267903|gb|CI380036.1|CI380036 CI380036 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): GCTGCAATCAAAATTGTGATTCTCACTTGCCATGTGTTCTCTGTTATATAAATATATGTACTACCGCAGAACGAAAATACTGAATGAACGAGATGGAATGGATCTTTCTTCTGCCGCGGTGAAGATGGACATACATTCAAAGTCAAAAGCTGAAAGCAAACAAGTCCGGCTCTCATTGCACAGGGCCTAATTCCAGCCTTCAAACTATCCAAAGCCCTCTCTAGCACATAGTACAACGGAGACTTGAGAGGCGGAGGGAGATGCTGAAGTTATGCAGCTCCAAGGTTTCGCCAACCGCATAGGAGTAATATGATAAATATTTGCATTCCTGAGCTCATGCAAAGGTACAAGTCTATCCCGTACATATTATACAATCAAAATTAATATGCTCCACCTTTTAACCAGCCAAGATACCATGGATTATTCACTCAGAAAACTCTA | |||||||||
gi|86886528|gb|CI322760.1|CI322760 CI322760 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): CTACAAATCTATTCTTGATCTCAATATGGAGGTACATCTAAAGTCGTATCCGAAAACTTTAACAAGCACTTTACAGATAATCGATGGTATAAAACTTCTGGAGTTAAAACAAAGAGAATGGGGGTTCTCACGCAGACTTGTGAGGAAAAGGGAGCAGTGTCCCTGTTCTTTACCATCAAGCAATGATCCATGGAACAGAGGCTCCTAAATTAGCTGCTTTTGGATTTCAGTGCATTACTGAGCCAGTCCAAACCTTCAAAAAGGCCCTCTCCTTTTATGGCAGATGTTTTGAAAATCGCCCATTGAGGGCTCTTAATCTTGTGGAGTTCTAATGATTCCGTTATGGGAGCATCATCAAGTGCACCTGGAAGATCCTGTTTATTCGCATATACAAGGACAACTGCACCTTTTAGCTCATCCTCCTCAAGGATAGCATGAAACTCTTCTTTTGCCGTTAAAGCCTATCTGTATCACTTGAATCGAAACATAATGATAGCCTGGGTATTGGGAAAGTAGCA | |||||||||
gi|88544932|gb|CI472459.1|CI472459 CI472459 Oryza sativa (japonica cultivar-group) 15 days after pollination pistil Oryza sativa ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): AGGTGGAAATTAGGCGTGTTCAATCATCGGAAAAAAATGTCACAATAGAAGGGATTTACGGGTAAAGCCACCAGTGACCAACAGTCCTGANAGTTTGCTCGTCATTTTCTACAAATCTATCCTTGATCTCAATATGGAGGTACATCTAAAGTCGTATCCGAAAACTTTAANAAGCACTTTACAGATAATCGATGGTATAAAACTTCTGGAGTTAAAACAAAGAGAATGGGGGTTCTCACGCAGACTTGTGAGGAAAAGGGAGCAGTGTCCCTGTTCTTTACCATCAAGCAATGATCCATGGAACAGAGGCTCCTAAATTAGCTGCTTTTGGATTTCAGTGCATTACTGAGCCAGTCCAAACCTTCAAAAAGGCCCTCTCCTTTTATGGCAGATGTTTTGAAAATCGCCCATTGACGGCTCTTAATCTTGTGGAGTTATAATGATTCCCGCTATGG | |||||||||
gi|88420092|gb|CI513773.1|CI513773 CI513773 Oryza sativa (japonica cultivar-group) 2 nuclei stage pistil Oryza sativa Japonica G ACTTTAAATGTGTGTCCGTAT EST sequence (targeted fragment marked with yellow): AAGGTGGAAATTAGGCGTGTTCAATCATCGGAAAAAAATGTCACAATAGAAGGGATTTACGGGTAAAGCCACCAGTGACCAAGAGTCCTGACAGTTTGCTCGTCATTTTCTACAAATCTATCCTTGATCTCAATATGGAGGTACATCTAAAGTCGTATCCGAAAACTTTAACAAGCACTCTANAGATAATCGATGGTATAAAACTTCTGGAGTTAAAACAAAGAGAATGGGGGTTCTCACGCAGACTTGTGAGGAAAAGGGAGCAGTGTCCCTGTTCTTTACCATCAAGCCAATGATCCATGGAACAGAGGCTCCTAAATTACCTGCTTTTGGATTNTAGTGCATTACTGAGCCAGTCCAAACCTTCAAAAAGGCCCTCTCCTTTTATGGCAGATGTTTG | |||||||||