miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: ACTTTTTGCAGGATCCATCA
species: Populus trichocarpa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|52495476|gb|CV242501.1|CV242501 WS02515.B21_D19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02515_D19 3', mRNA sequence 

ACTTTTTGCAGGATCCATCA
|||||||.|||.|||||  |
TGAAAAATGTCTTAGGTCAT

EST sequence (targeted fragment marked with yellow):
GCAGAGATTTACTATCAGGCACGTGCCATATCTACTGATGGACTCAGGCCAAGTTTCTTTACAATTAATGCGGTGGTTTATGCCATTCAGATTGCTATGTGGTTGGTGTTGGCTTGGAAAACTGTTCCGATTGCTGTCATCCTATCAAAGATTTTCTTTGCAGGTGTGTCTTTGTTTGCAGCTCTTGGTTTCCTACTCTATGGAGGAAGGCTCTTCTTAATGTTGCGGCGATTCCCTGTGGAATCCAAAGGGAGGCGTAAGAAATTGCAAGAGGTTGGCTATGTGACCACCATATGTTTCTCATGCTTCCTTGTTAGATGCATTATGATATGCTTCAATGCATTTGATAAAGCTGCAGACCTTGATGTGTTGGATCATCCTGTTCTAAACTTCATATATTACTTGCTGGTGGAGATTTTACCTTCAACTTTGGTTCTTTTCATTTTAAGGAAATTGCCTCCAAAACGTGGTATCACACAGTATCATCCCATACGTTAAAAGAATTGGATGTAAGTGTATGGTGGAATGGAAACCTCAAGAATGGCTTTTAATGCTTCCATTCATTTTGGAGATGCTGTGATCTTACAAAGAAGAGACGGGGGAGAGCCAAAGTGAGTTGTTACTTTAGAATCTGCAAGCTAATTTTATAGATGTAAAATGTCACTTATTCTTGGTAGGAGGCCATGGATGTGTTGAAAAAGCAATGACCTTCCAAGTACTGGAGTATTTCTTACAGTTAGTGTTCTAATCTGTGCTTCATGTCCTGCTTTGCATGCTTGGTGCTCTATTGTGTCTACAAGTTTGCAAGCAACCATACATGCACATGAAAATAGTGGAAAAAAGTTGTTTGTTGTACCATAGGCTTGTGTTTCTTATACTGGATTCTGTAAAAAGTTCTTCTAAAAAAAAAAAAAAAAAA


gi|73888236|gb|DT490974.1|DT490974 WS02546.C21.1_H12 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02546_H12 3', mRNA sequence 

ACTTTTTGCAGGATCCATCA
||||.||||||| | |||||
TGAAGAACGTCCGATGTAGT

EST sequence (targeted fragment marked with yellow):
GCAGCACTGCAAGAGGTCTTATTATATCGTCAAAAAAGGATCACAATATCATAGCGTATGCGTGGAATAGCTGCATTATTGCCTGCAAAATACAAATTCAAGCAGATCCGCCCTATGACAGGATCATGTGGTACTGTAGCCACTTCAACTCGGAAGAGACAAGAGGGCAATGCTTCTTTCGAAAAAGTGCTAGTTCCAAATGAAAAGATGGATCCTATTGTTGCCTTTAGCAAACCTCCACCATTACCACCTGTTTTTGGACCATTAATTGCTCTCTCGTTGTTTGAAATGTGGTCGAGCCATGACGGTGATGATGACTGACTGTTGATGTAAAGCTGCAATCTCTACTGTTGGTGTTTATGTATATAAAAACTTTTGTGAGTGCATCCTATCCAAAATACTTATTTAGAAAATGGAATACTATGTTTAGTGCAAAAGCAAATAATCTTGCAATGGGTTTCCAGGCTCTGATGTAGCCTGCAAGAAGTGGGTTGACAAGAGGGGCCAAAAGCCTGCTGTAAATTTTTGAACAGAATTGCATTATGACATGAGGACACTGTAGCAAAAAAAAAAAAAAAAAA


gi|73880139|gb|DT482877.1|DT482877 WS02521.B21_A12 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02521_A12 3', mRNA sequence 

ACTTTTTGCAGGATCCATCA
  |||||||||| ||||.||
CAAAAAACGTCCCAGGTGGT

EST sequence (targeted fragment marked with yellow):
GCGAGCACCGACGAAACGTGTTGTGTGGAATAGATTCTCTTCGAGTTGAATATTTAGTTTTGTGTCAGTTAAAGTGAAAATACAAATTCGAAATGTCTGAACCAGCAGTTTGTGGAAAATGCAAAGAACAAATCATCGGCAAAACGCTGACAGCATTGGGAAAATCATGGCATCCAGACCATTTTGTGTGCTCAGTATGCGAAAAACCAATCACCGCCAAAACATTTAATGAACGAGATGGTGATCCAGTATGCTCCGATTGCTATGTCAAAAAATATTCAGCATCATGTCATCAATGCAAAAAGCCAATTGTAGGCAAAGTTGTAAAGGCAATGGACAAAACATGGCATGAAGATCATTTCTTATGTGGTGGACCCTGCAAAAAACCAATGTCCGGCCAGCCGTTCTTTGAACGTGATGGCAAACCATACTGCAAGGCCGATTTCGAAAAATTGTTCGCTAAAAAATCGGTGCCAAAAGCCCGTAGTTGAAGACACCTTTGGAGTTGACGACAATCAGCCGGTTTGCACGAAATGCATGTAGAAAAATGAACAATATTATGTCATCAGATGCTTAACTATTATTACACACTGCGACAGCAATTTTCACGTACAATTTGGGTTGTTCATGGGTGAGAAAAAACTTCAAATTTGTATCATTGTGTTATTGAAATTGTTAGTGCATTCATTTTGTTACACATTTTCGGTTCGATAAAAGGTTCTATAGCCAAAAAAAAAAAAAAAAAA