| mature miRNA: AGAACCGAACCGAACCGAACC species: Actinidia deliciosa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|195264293|gb|FG470564.1|FG470564 021008KALA012537HT (KALA) Dormant kiwifruit buds three days after hydrogen cyanamide treatme AGAACCGAACCGAACCGAACC EST sequence (targeted fragment marked with yellow): ACTGGGTACTTTCGCAAACACACACCCCCTCACTTTGCCGCAATGGTTCTTGAGCGTTTCTCTCGGGTTCCTCGGCATGCCTATTGCTGCTGCCATAAAGATGATCCCGGTGGGGTCGACATAAATATCGGGTGAAGCGAAACAGGTACTTGGCTAATTTTTTCTATATGTTCATCAACGATGAAAGAGACTTGCCTTTGCGCCCCGTATTTCTGTAGCAGCACTATGTAGGGTATTTGATAGGATTTCTGATATAGGCTGAAGATCTCCCACGGGTAGACAATCGCTTGTAAAACAAATCTCTTGGTCTTTTCTTTTCTGTGTTTAGGCTAGGGGTGCACAAAAGACCAAAAGAATCGAGAACTGAACCAACCCGACTTTATTGGTTCGGTTTGGTTCGGTTCTACCATGTTCATGGTTCGGTTCTGGGTCTAAAAATTGTATACCTGAACAATTCGGTTCGGTTCGGTTCTCGGGTCTGTAAGATTTTTTTATCCAGAACCGAATAAGGAATCGAAGTCTAGACCTGATCATATAGTAATACAATACGCTCACCATACACTATTATTGCTTATGGTGGCTT | |||||||||
gi|195197028|gb|FG449067.1|FG449067 010530KAFB002559HT (KAFB) Actinidia deliciosa buds 3 days after hydrogen cyanamide treatment AGAACCGAACCGAACCGAACC EST sequence (targeted fragment marked with yellow): GTAGGAAAATAACAAAAAAACTTACTTTCAGAAAAAACAAAACAAAAAACTTATCTAATTTAATCCTTTGCATTATCAAATGAAATTTATTGGGGAAAAAAAAAACAATTTTCAGATTTATTGGATTATATATCAACCTCTATATAATTCAGAAATTTTTATTAGTTCACATATCTTTATACTAGGGGTGCACAAAAGACCCGAAAGACCTGAGAAACGAACCAATCCAATCTCATTGGGTCGGTTTGGTTCGATTCTACCATACCCATGGTTGGGTTTTGAGTCTAAAAATTGTAGACCCAAACAATTCGGTTCGGTTCTCGGGTCTGTAAGATTTTTTTACCCAGAACCGAATCGAACAAGGAACCAAAGTCTAGACTCGATTATATAGTAATACAGTGCACTCATCACACGCTATTATTGCTCATGTTATATAAATCAATTAGGGTTCTAGTCTTCCAGATTGCCGCTGTAGCCCCCCATCCCTTCAACAGCGCCTCTCTTC | |||||||||
gi|195286071|gb|FG452348.1|FG452348 010603KAFB006656HT (KAFB) Actinidia deliciosa buds 3 days after hydrogen cyanamide treatment AGAACCGAACCGAACCGAACC EST sequence (targeted fragment marked with yellow): GAATTCTGGATAGAAAAAGAATGTAAAATGTTTTTGATGAAAAATGGATAGAGTAATCCTAATATCCATGGGAAGTGAAAATATTTTTGTTGGGAGAAAACTAAAATAATCACGTGTAGGTGTGAATTAATGTTCTAGATAAATATGTATACGCGTGTATATATATATATATATATAATCGATTTCGGTTCGGTTCGGTTCGAACCACGGTTTGAAAATAAAAACCGGTAACCGAACCAAATTTACCAGTTCTTAATTTTTAAAAACCAGAACCTAACCATTAAACCATAGAACCAATCCAAAATGTACGGTTCGGTTCGGTTCACCGGTTTTCGGATTTTTTTGGACACCCCTACGATGCGTGATACCTACAAATTGTAGAAAAGAAAAGCATCACGTGGCCCCCTCGAGAGAAATTTTTGATTTGGCCACTGGTCTGTGCAACGTTAAGCAATACAACTTGCAAAGAAAATGTAATCCATAGAATTCTACATAGGTCTTTAAA | |||||||||
gi|195321640|gb|FG451981.1|FG451981 010603KAFB006222HT (KAFB) Actinidia deliciosa buds 3 days after hydrogen cyanamide treatment AGAACCGAACCGAACCGAACC EST sequence (targeted fragment marked with yellow): GGGGTCCTTGATTTTTTTTACCGAGACCCGACCCAAGAACCGAACCGAGAACCGAGAATCAACCCAAGACCCGAGACCCGAAGTCTAGAACCGACCATATATACATACAATGCACTCGCGCACACTTGATTATTACCTATATTATATTATTTTTTAGGAAGACCCGAAGTCCCGACCCAAACCGACCCGAACATACCCGAGAACCGAGGAACCGAACCGGAACCGAGCGGTTCGGATTGGTTCGGTTCTCGGGTCAGTTCCGAGTCCAAAAATAAGGAACCGTTGCTGGTCGGGTCGGGTCCGTGACATACCCGACCCGAACCGATCCGTGTGCACCCCTACTCAGTACTGCAGATAATTGGGTACCCAAAGAGGCTAGTGTAAACCTT | |||||||||
gi|195200299|gb|FG414505.1|FG414505 000512KUBA005647HT (KUBA) Hayward breaking bud Actinidia deliciosa cDNA clone KUBAA00564, mR AGAACCGAACCGAACCGAACC EST sequence (targeted fragment marked with yellow): GTTTTTCTCCATACAATTCGATTCACATTTCAAAAAAAATGAACCCATAGCTCACTATTCGGTTCACAATATTTCATCCCGAACTGCGGTTTTTAACCTAATCGAACCAAACCGTTAGCTATCGATTATTCATGATTCAGTTTGGTTCACTAATATTCACGGTTCGGTTCGATTTAGTTCACTAATATTCATGGTTTGGTTCGGTTTGGTTAGGTTCGGTTCACTAATATGTGTTCATTTTGCACACACATTCGATTGTTCACAGTTCGGTTCGGTCCACTAATATTCATAGTTCGGTTCAGTTCAAAAAAGGGCCAAACCGTTGTTCACGGTTCGGNCCATAGCTCGGTCTTAAACCAGACCGAACCCTAGTCACCCCTAGCACACACCCAATGATTGTACTTTGAAATCTCATAAACTAAAATCCTTGTCTACAATCAAATCACAGAAGTTGGTTAAAAGATGAA | |||||||||
gi|195200299|gb|FG414505.1|FG414505 000512KUBA005647HT (KUBA) Hayward breaking bud Actinidia deliciosa cDNA clone KUBAA00564, mR AGAACCGAACCGAACCGAACC EST sequence (targeted fragment marked with yellow): GTTTTTCTCCATACAATTCGATTCACATTTCAAAAAAAATGAACCCATAGCTCACTATTCGGTTCACAATATTTCATCCCGAACTGCGGTTTTTAACCTAATCGAACCAAACCGTTAGCTATCGATTATTCATGATTCAGTTTGGTTCACTAATATTCACGGTTCGGTTCGATTTAGTTCACTAATATTCATGGTTTGGTTCGGTTTGGTTAGGTTCGGTTCACTAATATGTGTTCATTTTGCACACACATTCGATTGTTCACAGTTCGGTTCGGTCCACTAATATTCATAGTTCGGTTCAGTTCAAAAAAGGGCCAAACCGTTGTTCACGGTTCGGNCCATAGCTCGGTCTTAAACCAGACCGAACCCTAGTCACCCCTAGCACACACCCAATGATTGTACTTTGAAATCTCATAAACTAAAATCCTTGTCTACAATCAAATCACAGAAGTTGGTTAAAAGATGAA | |||||||||
gi|195264293|gb|FG470564.1|FG470564 021008KALA012537HT (KALA) Dormant kiwifruit buds three days after hydrogen cyanamide treatme AGAACCGAACCGAACCGAACC EST sequence (targeted fragment marked with yellow): ACTGGGTACTTTCGCAAACACACACCCCCTCACTTTGCCGCAATGGTTCTTGAGCGTTTCTCTCGGGTTCCTCGGCATGCCTATTGCTGCTGCCATAAAGATGATCCCGGTGGGGTCGACATAAATATCGGGTGAAGCGAAACAGGTACTTGGCTAATTTTTTCTATATGTTCATCAACGATGAAAGAGACTTGCCTTTGCGCCCCGTATTTCTGTAGCAGCACTATGTAGGGTATTTGATAGGATTTCTGATATAGGCTGAAGATCTCCCACGGGTAGACAATCGCTTGTAAAACAAATCTCTTGGTCTTTTCTTTTCTGTGTTTAGGCTAGGGGTGCACAAAAGACCAAAAGAATCGAGAACTGAACCAACCCGACTTTATTGGTTCGGTTTGGTTCGGTTCTACCATGTTCATGGTTCGGTTCTGGGTCTAAAAATTGTATACCTGAACAATTCGGTTCGGTTCGGTTCTCGGGTCTGTAAGATTTTTTTATCCAGAACCGAATAAGGAATCGAAGTCTAGACCTGATCATATAGTAATACAATACGCTCACCATACACTATTATTGCTTATGGTGGCTT | |||||||||
gi|195253920|gb|FG467732.1|FG467732 011204KAKA004142HT (KAKA) Dormant kiwifruit buds one day before hydrogen cyanamide treatment AGAACCGAACCGAACCGAACC EST sequence (targeted fragment marked with yellow): AGAACCTCTAAAGCATGAGTCATATTGTCTCAAATTGCTTTTGCCAAATCAATCTGACTGGGATGTATATCAACTGACTCAGTCCGCTATTTGGCTGTTTTGAGAGCTAGTTACCTAAGCCACCTGAACATCCAACAATTTACATGAATTTATTAAATTTAACTAACAAATAGCCTTTGATGGAGAAAATATGACTCGTATAGGCAACCCCAATCAAATTGGGACACAAGACTAATTTGGTTTGGTTTGGTTTGGTTTGTTGACCTAAGTCAGCCTAAAGCTCATTGCTTTTTAGATCCAAATTGTTGTGACCAACATGACTTCTAAACACTAAAAACTAATGTGTTGGTTTTTTATACATGGTGGCAGTCATTTCTATTGCTCAACTTTGTCTGATGCAGGCTGTTTTTCGTGGCTTCCAAGCCCGGAGGCAGTATCGGAAGATTGTTTGGTCAGTTGGAGTGCTTGAGAAGGCAATCTTGCGCTGGCGGTTGAAGAGAAAAGGCTTTCGCGGGCTTGAGGTTTCCCCCGATGAAGCTGTTGTGATAGATCCGAAGCAAGAAAGTGATGTTGAGGCCTTCTTCCTG | |||||||||
gi|195248652|gb|FG414316.1|FG414316 000512KUBA005308HT (KUBA) Hayward breaking bud Actinidia deliciosa cDNA clone KUBAA00530, mR AGAACCGAACCGAACCGAACC EST sequence (targeted fragment marked with yellow): GAGAACTAGTGAAGTCTTTTTTTTTTTTTTTCTCAATTTTGGCCCCAGATTTTGTAAAACTTATATTTAAGGAACCCTGGGCGTGGGTATGGGCAGGGGTGCACAAAATACTCGCCCGACCCGACCCGACGTCATTGGGTCGGTTTGGCTCGGTTCCACCATGCTTTGGATCGGTTCATGGGTCTAAAAAATGAAGACCCGTACGGTTCAGGTCGGTTCTCGGGTCCGTGAATTTTTTTACCGAGAACCAACCAGAGACTCGAAATCTAGAACCGAACGTATATACATATAATGCACTCGCGCACACTTGATTGCTATCTATACTATATTAATTTTAGGAAGACCCGAAGTCCCAAATCGACCCGAGA | |||||||||
gi|195283389|gb|FG448252.1|FG448252 010513KAFB001357HT (KAFB) Actinidia deliciosa buds 3 days after hydrogen cyanamide treatment AGAACCGAACCGAACCGAACC EST sequence (targeted fragment marked with yellow): GGAGTCTTTTGGACTCCATGGGTGAATCACTGGTTCCTTGCATTTTTTGGGGCGAAATATAAGGACTTCATTCATTTAATTGAGAGAACATAGCTTCAAATTCCAAGAACAAACAAACCTGNGAAAAAGAGAAGCATAGTTAGGGCTATTCACGGGTCGGATCGGGGTTGGGGTCACCCGACATTCGAACCGAACTGGAAGCATAGTTAGGGCTATTCACGGGTCGGATCGGGGTTGGGGTCACCCGACATTCGAACCGAACTGGTCGGGTTGGAGAAGTTTGGGCCCAATTCCGAACCAATAGATGGTTGGTCGGGTTGGATCGGTTCAGGTGGAATTTGATCGAGTTGGTGAAAAATGATAGATTTTAGTATAATATTTGTCGGGTTGGTCGGCCGAGTTGGTCGATTGAATGATCCGACACCCGAATCGAATGTGGTCGGGTTAGTTAAAATTCACCCGTTATTCACTCGTAGAGTGAGCGGGTTTGGTTGGGTTCGGTTCGAATCGATCAGGTTAGCGGGTAGATCGGTTATTTGAACCACCCTAATTAAAATGGTTGATTAGAGGTGGTAGGCACCAAAATGGTTGCTATTTATGGGGACTACTACATTTTTTTCAAAAAAATAAAATAAAATAT | |||||||||
gi|195208412|gb|FG442784.1|FG442784 001202KADA007523HT (KADA) A. deliciosa ripe fruit inner cortex Actinidia deliciosa cDNA clon AGAACCGAACCGAACCGAACC EST sequence (targeted fragment marked with yellow): GCTCTGCTCTCGCTCTCCACAACTCACCAATTCCTCTCCATTCTAGGGGTTCGGGTTGGTTCGTTTCTCAATTAGGGTTAGGGTTTCTTCGAATCGCGTTCTGCGTACGATTTCTCTCAGGTTACGTACGTGTGATTGGAGTAGAGAGAGAGAGAGAGGAAGGCACGGTGGGGTTCGTCTGTGATCAGGTCTTCTGAAGAAGATCTGAGTTTTTGTTGTATTAAAAATGAGTGCTTCGAGGTTCATAAAGTGCGTTACGGTCGGTGACGGAGCCGTCGGCAAGACCTGTCTGCTGATATCGTACACCAGCAACACGTTCCCTACGGATTACGTGCCAACTGTATTTGACAATTTCAGTGCGAATGTGGTCGTCAATGGTAGTACTGTTAACCTTGGATTGTGGGATACTGCTGGACAGGAGGATTACAATAGATTAAGACCATTGAGTTACCGTGGAGCAGATGTTTTCATCCTGGCATTCTCTCTCATCAGCAAGGCCAGCTATGAAAATGTCTCGAAAAAGTGGATTCCCGAATTGAAGCATTACGCTCCTGGCGTTCCTATAGTTCTTGTTGGAACAAAACTTGATCTTGGTGACGATAAGCAATT | |||||||||
gi|195324593|gb|FG450921.1|FG450921 010602KAFB004782HT (KAFB) Actinidia deliciosa buds 3 days after hydrogen cyanamide treatment AGAACCGAACCGAACCGAACC EST sequence (targeted fragment marked with yellow): GGTTGGAACAAGAGGTACAGATGACAATCCATATTACTGTATATCATTTTTGTTGATCATGGAGTTCCCCTAACAGGGCCACTTAAATTAATGCCCAAAGTTATGGTGATCTAAGGAGGGGTGTTCACGGTTTGGATTTGTATGGTTTTAAGAAAAACTGCAAACCAAACCGTTCCTAACGTTTAAGGAAATTCCAAACCAAACCATTAGACCAATGAAACCAAACTGACCCAACCATAGAATGCGGTTTGGTCCGGTTTGGTTTCCCGGTTCAAAATCTATCTCTACCAATTATCTTTGCGTACCTAAGAAGTATAGAAAGTTCAACACATAAACAACTCAACCAGGAAAAGCAAACTACACGTCATCATCACAGGATGTCTGAAAATTATGAACAGCTTCTATTGTTGCCCTTTTTGTTGATGTGGTTGGTTATGCAGGATTTTGTTCTGAGCTAAGTTATTTATTAAGCAAATTACAGATTTAGTATACTTTTATCAGTTTATGTTATGCCCTT | |||||||||
gi|195216144|gb|FG417634.1|FG417634 000719KUBA014559HT (KUBA) Hayward breaking bud Actinidia deliciosa cDNA clone KUBAA01455, mR AGAACCGAACCGAACCGAACC EST sequence (targeted fragment marked with yellow): ATAATGGATAACAAAAGAAAAATTAACTGATAAAATCTTGGATAGGAAAATAATGTGAAATGTTTTTGATGAAAACTGGATAGAGTAATCCTAATATCCATGGGAAGTGAAAATATTTTTGTTGGGAGAAAACTAAAGTAATCACATGTAGGTGTGAATTAATATTCTAGATAAATATGTATACGCGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATCGATTTCGGTTCGGTTCGGTTCAAACCACGGTTTGAAAATAAAAACCGGTAACCGAACCAAATTTATCGGGTCTTTATTTTTAAAAAC | |||||||||
gi|195286071|gb|FG452348.1|FG452348 010603KAFB006656HT (KAFB) Actinidia deliciosa buds 3 days after hydrogen cyanamide treatment AGAACCGAACCGAACCGAACC EST sequence (targeted fragment marked with yellow): GAATTCTGGATAGAAAAAGAATGTAAAATGTTTTTGATGAAAAATGGATAGAGTAATCCTAATATCCATGGGAAGTGAAAATATTTTTGTTGGGAGAAAACTAAAATAATCACGTGTAGGTGTGAATTAATGTTCTAGATAAATATGTATACGCGTGTATATATATATATATATATAATCGATTTCGGTTCGGTTCGGTTCGAACCACGGTTTGAAAATAAAAACCGGTAACCGAACCAAATTTACCAGTTCTTAATTTTTAAAAACCAGAACCTAACCATTAAACCATAGAACCAATCCAAAATGTACGGTTCGGTTCGGTTCACCGGTTTTCGGATTTTTTTGGACACCCCTACGATGCGTGATACCTACAAATTGTAGAAAAGAAAAGCATCACGTGGCCCCCTCGAGAGAAATTTTTGATTTGGCCACTGGTCTGTGCAACGTTAAGCAATACAACTTGCAAAGAAAATGTAATCCATAGAATTCTACATAGGTCTTTAAA | |||||||||