| mature miRNA: AGAAGAGAGAGAGCACAGCTT species: Festuca arundinacea database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|74450468|gb|DT706643.1|DT706643 s13dFA05F07ST059_100438 Tall fescue, Festuca arundinacea Schreb, stems Festuca arundinacea cD AGAAGAGAGAGAGCACAGCTT EST sequence (targeted fragment marked with yellow): GGCACGAGGGTGGATCTGAGCGGCTCCAAGACCTACTACTGCCGCCACAAGGTCTGCTCCATGCACTCCAAGGCGCCCCGCGTCGTCGTCGCCGGCCTCGAGCAGCGCTTCTGCCAGCAGTGCAGCAGGTTCCACCAGTTGCCTGAATTTGACAATGGAAAACGCAGCTGCCGCAGACGTCTCGCAGGTCACAATGAACGCCGTAGGAAGCCGCCTCCTGGCCCTCTGGCGTCACGCTATGGCCGACTCGCTGCATCCTTTGAAGAACCGGGCAGGTACAGAAGCTTTCTGTTAGATTTCTCCTACCCAAGGGTTCCGAGCAGCGTGCGGGATGCTTGGCCTGCAGTTCGACCAGGCTACCGTATGCCCAGTGAAATCCAGTGGCAAGGGAACCTAGACCTGCGTCCTCACACGGGTTATGGCCCACATGCATATGGCAGCCACGGCTTCCCCGGTCCAGAGCTCCCTCCAGGCGGGTGTCTCACAGGGGTCGCCACCGACTCCAGCTGTGCTCTCTCTCTTCTGTCAACTCAGCCATGGGATACCACCACCCACGGTGCCAGCCACGACCATCGGTCTGC | |||||||||
gi|74424365|gb|DT680540.1|DT680540 s13dFA06B07DS061_78887 Tall fescue, Festuca arundinacea Schreb, Drought Stress Festuca arundi AGAAGAGAGAGAGCACAGCTT EST sequence (targeted fragment marked with yellow): GGCACGAGGCTCAAGGAGAAGAAAGAGAGAAAAATGCTACTCCCTCCGCGTTCCACATTACTTGTCGCTGATTTAGTAGAGGTCCGGCGTTACTGGTCGAGGTTCCAAGACACACAAATATAACAGGTAGGGCAAGCCGGCTGTGTTCTCTCTTTTTTTTACAGGGAGCTGAATCATGAATGAATCACACTTCTAATGAACCTCTTCTCGTATCATGTCACCAGATTAATTCAACTTGACGAGAGATACACTCGTATGGTGTTGTATTTCGATATCGGTTTTCTCGATCGAATTCATGTTTATTTACACTGATTTGACCAAATTTAATATGCGCAGACCATCATCTGCATTTTGGAAAAAAGATGCTGATATTCTTACGGAAAATATTCGATTCATGTCCATGCGGTCTAGTGTTTGGTAAATTTATTTTCGAAAAGGAGGCAAACCTATTCCCCCGCTAATTCTGTGCAGCTGAAGCAATGGAATCTCTAGATATACCCAAAGGTGTTCGTCGAGTTCTCTTCAGAACATTGAACACATACAGGGGCCTCATGTGG | |||||||||
gi|74456277|gb|DT712452.1|DT712452 s13dFA08A05SD037_503628 Tall fescue, Festuca arundinacea Schreb, young seedlings Festuca arun AGAAGAGAGAGAGCACAGCTT EST sequence (targeted fragment marked with yellow): GGCACGAGGATTATTTTCTGCTCCTGCACACGATCTGTGCAACTGCAGTTGCTTTGCCCCTGATGAAAGGGCCAAACCTGCTGTTGCGTTGCCCAAACCTGCTTGTTAGTTAATTACATAGTGACATATGGTATATTGTTTCATAGACTGTAGGCTGTGGCTACTGAAAGAGCGTACAGATTAGCAATACTCCCAATAAGCTCACCGAATAAAAAAACTAACCACTTGCGTTTGGCATCGATTAGATTAGTTGAAAATGGCCAGAACACATGCATGCCATTGTCTAAAAAGCACCCATGCTCTTGCTAGTGCCATTGTCTAAAAAGTACAGCTCTTGCTACTGTTTTGGCATTTTCAGTTAAGTACAGTAAGCTTTTCTATACTCTAATGACATCATGTAGATGATGCTGTTCTAATTTTAACCATGCTGTGATCTTTCTTTTCTTTTCCAGCCAATCAATCAACACGATGGTTGATGCATCGGGGAGCAGGAGCAAGAGATTGCTGCGTAACAGCATGAGCCGATAGGGAGGAGAATAAACTTCAACTACAAGGTTACCTCTCTTGGGAATGCACTATTTTCTTTGATAAAAGCTGTACTGGTAGATCCAGTCTGTGCACTCTCTTGTTTG | |||||||||
gi|74431220|gb|DT687395.1|DT687395 s13dFA61E01FM007_476662 Tall fescue, Festuca arundinacea Schreb, Floral meristem Festuca arun AGAAGAGAGAGAGCACAGCTT EST sequence (targeted fragment marked with yellow): GGCACGAGGCCGCCTCCTGGCCCTCTGGCATCACGCTATGGCCGACTCGCTGCATCCTTTGAAGAACCCGGCAGGTACAGAAGCTTTCTGTTAGATTTCTCCTACCCAAGGGTTCCGAGCAGCGTGCGGGATGCTTGGCCTGCAGTTCGACCAGGCTACCGAATGCCCAGTGAAATCCAGTGGCAAGGGAACCTAGACCTGCGTCCTCACACGGGTTATGGCCCACATGCATATGGCAGCCACGGCTTCCCCGGTCCAGAGCTCCCTCCAGGCGGGTGTCTCACAGGGGTCGCCGCCGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAGTACTCAGCCATGGGATACCACCACCCACGGTGCCAGCCACGACCATCGGTCCACGGCCATGTCCGCGGCCGCGGGCTTCGACGGCAACCCTGTGGCAGTGTCACCCTCCATCATGGCGAGTAACTACATGCCGCCACCATCGAACCCCTGGAATAGCTCCCGGGG | |||||||||
gi|43402094|gb|CK802031.1|CK802031 NF38b06f44.r1 Tall Fescue PI283316 44 deg C Heat Stress SSH cDNA Festuca arundinacea cDNA clo AGAAGAGAGAGAGCA-CAGCTT EST sequence (targeted fragment marked with yellow): GGGCAGGTACTGCGTTGCAGCGTTTGATCGGTGAGATTCTTGCTGCCGCTCGAGCCGTGGATACACGGGTGATTGCCTGATCGGGGACTGAGCAAGCACCGTGAGTTTCTGCTCTCCTTCATGTATATTTATTGGAAAACGGTCGTAATCAGGCGACCGATCGCGCCGCGTGGGATCGGTCGCTGATGCTCACGCGCTCTCACGTCGCTTTTCAAAGACTGTTCCATTTACTTTAATGGTTTTCTATTGTTTTTTCGAGCCACGCACGCACGCTGCTATTCTAGCCTGCTGCTCTCTCTCTTCTTGGCATGCAATTCTCACATGGGTTGGACCCACAATTGTTGTACTACTTTTTACTAGCTACTAATGCTGGTTCTTTATGTAATAGCGAGATGGGCTGCAAATGACATGTAGGTAATGTANCCTACTATATTTTGGCTACTAATGCTAGCTACTCTTCCTATTTTTG | |||||||||
gi|74427038|gb|DT683213.1|DT683213 s13dFA75C03DS018_144118 Tall fescue, Festuca arundinacea Schreb, Drought Stress Festuca arund AGAAGAGAGAGAGCACAGCTT EST sequence (targeted fragment marked with yellow): GGCACGAGGCCGCCGCCTGAGAGCAGCAGCAGCAACAAGATGTTCTCCGACGGACGGCTGACGCACAACATGCTCGACTCTGATTGTGTTCTCTCTCTTCTGTCATCCTCTGCCAACTCCTCCAGCGTCGTCGACGTCAGCCGGATGGTCCGCCCCACCGAGCACGTCCCCTCCGCCGTGGCCGCCCAGCAGCACCTCGTTCCCAACCTGCAGCACTTCGGGAGTGGCTCCTCCTGGTTCGCCTGCTCCCAGGCCTCCAATGGCGCGGGGTTCGCCTTCCCCAGCATGGAGAGCGAGCAGCTCAACAACACTGCCCACCTCGTGCCAAGCTCGAACAACAACAAGATGAACTGCCACGGGATCTTCCACATCGGCGCCGA | |||||||||
gi|74449611|gb|DT705786.1|DT705786 s13dFA48G07RT052_115376 Tall fescue, Festuca arundinacea Schreb, roots Festuca arundinacea cD AGAAGAGAGAGAGCACAGCTT EST sequence (targeted fragment marked with yellow): GGCACGAGGGAGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTGAGTGAAATGGGACGTCAGGTATAATGTTTGTGAGACTGAAGTCTTTCAATATATAAGGCGCGAGGCAAATCACGCAGCCTGCAGCAGTTAGTCTAGATTTACATGAAACATTAATAAACATACGGGCAGAAAGCTGAACGACTGCTACATGTATTCCAAATGATCAAACGATGTCAATATAATACAGGACTATAAAAATACATGCAGTAGATATGGCTTAAATCATTCCCCCTCCACCACCCCTAAGAAATGCCAGCTTGGTCGCTTTGACACACTGAATCTGTCTCTCTCTCTTTTCGCGCTGGCATTCGCCGCACCAACCAGAAAAATCTTTCTGGTATTTCTTCATCTCTCTGAACACAGAGCTTCTACACCACAAAAGCAGGTTCATTCTGAGCCCTGATGTTGTTGGTCTAGCACCATGTCTATGACGACCACGATGAAGCACAGCTCGTCCAGGAATATGAGAGTAATCATACATTTCCTCATGTTGTGTTTCTGAGTTCACGTGATTCTCACAGCGGATGCCACGAAAGTATAATTCACCACCAGAGAATTGTTTGCCAAGGCAAACATTTAATGTTACCTCAGAATCATCAACATGGAAACC | |||||||||