| mature miRNA: AGAAGAGAGAGAGTACAGCCT species: Brachypodium distachyon database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|270450917|gb|GT834207.1|GT834207 CCYO15204.b1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cD AGAAGAGAGAGAGTACAGCCT EST sequence (targeted fragment marked with yellow): TGCTCCGGTGCAGCCGTGACTTGACGTGTGACCGAACTCTTGGGAAAAGGCCAAGAGCGCTCGTGGTGACCAGCGACGTGTCGGCTGCCCCACGCAAAAGCGAACACGTATTCTCTGCGGCGAGGGGTTGTCCTCTCTCTCTTTCTTGCTGGGTAAACCGTCCGATCTTAGATGGACGGCTGGGACGCGAAACTAAAGTTAAGAGTCAGGAGTCAGTAGTCACTAACCGAGGAAAAAGGGTCTCCTCAGTCACGATATTTTTGTAGAGCGTTTCACATGCGTTTGGTGGTTGTTTTGGACTGGGTAGAGATAAGAACTTTTTAATAGTAGTATAAAAATAGACGGCTTTGAGATTCCTTTGGAAACAGGCAACTAGAAAAACAATATTGCCGTTGACGCGCCACTAGTACCAAAGAACGCCTATCCGCTCCCCAAAGATTAGGCAGATTCTCACGCGCGGAGTACTTCCTCCGTCTCATGTTAAATGTCGAAATATTACATGTATCTAGACATTTTTTAAGCATTGATGCATTGGATAAATTTGAGATACTTA | |||||||||
gi|270479429|gb|GT861344.1|GT861344 CCYP14314.g1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA c AGAAGAGAGAGAGTACAGCCT EST sequence (targeted fragment marked with yellow): TTCCTTCTCGAGGTAGCATGTGGGCAAAGGCCCATCAAGCAAGACTCTAAAGATAAGCAAATAATGCTTGTCGACTGGGTACTCGAGCATTGGAACAATGGGACACTCATGCAAACTATGGACACAAGGCTTCAAGGTGACTTTGACAAGGACGAAGCCAGCATGCTGCTGAAGCTAGGGCTCTTGTGCTTGCATCCGCTGCCCACTGCAAGGCCTAGCATGAAGCAAGTCATGGAGTACCTCGATGGAGAGGCGGCGCTACCGGAGCTGACACCGACACATTTCAACAACCTCAACATGGTGTCCATGATGGAAAGGGGAGGATTCCGTCCATCCATATTATCGTATCCAGACCTAACAGCAAGCATTGGCACATTCTCCGGCCTCTCAGGGGGGCGATGATAATCATATGTTTGCGGTGTTTTAACATCATTATGAATATGTACTCTCTCTCTTTTGCATACCATTATGAATACTTACTCTCTCTTTTTGTGCGGACCATTATGAAAATGTAACAGTAGTTTACGTGTTTTATATGCAATTAACTAGTAGACTTGGTTATGGATGGCCCCATGCATGGAAATGCATGGAATAAATAGCAATGGAGTGTAACTGGCC | |||||||||
gi|78004614|gb|DV473002.1|DV473002 5443_D02_H03Z_010 Brachypodium distachyon callus EST library Brachypodium distachyon cDNA clo AGAAGAGAGAGAGTACAGCCT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGGCCCACGCCACCAAGGAGCTGTGCTCTACCACTGCACCGGCCTCCTCCAAAGCCAGACCCCGCCGCGCCGCCAAGGAGCTGTCGCTGCACCGCCCTCTACCAACGCCGGACTCCGCCACGCCGCCAAGGAGCTGCTGCTGTACTGCCCTCCCCCAACGCCGGACTCCGCCGTGCCGCCAAGGAGCTGCCGCGGGTCTTCTCGGGCCTCGACGCTGCTGGATCCGGCCAGCGACTGCCCCGCCGCCGCGGATCCGGTCGGCCGCCGCCCCTTGCCCCGCAGGTTCGTCTCCTTCTCTCGGTTCCCTATCTCCCTCTCCGTTTCTCTCTCTTGCTCTCTCACTCTTGCAGGATGTCGGTGTCAAGGAGTAGGTGCTCTCTCTCTTCTCTCACTCATCTCCACCGGGGGGCGCCTCTCCCCTTCT | |||||||||
gi|270448992|gb|GT829326.1|GT829326 CCYO12054.g1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cD AGAAGAGAGAGAGTACAGCCT EST sequence (targeted fragment marked with yellow): CCAGGATTGGACGGTAAGATTGTGGTATGGGATCTGGAAAATCACATCCACCATTCCAAAAATAGTTGTGGATGAACTCCCCGTCGACGCCCCGTGCGCAATTCTTGACAGCAGACCCTGCAGGTTTTCAAAGATCCAGGGCCAGGTAGATTGCTTATTTTTGTTGTACCTGTACACAAACCATTTCTCTAGCAAGATCTTTAGCATAGGGGGGCCATCACTATAAGTTGGCGTTCATTTTTTTTTTGGAAGCTGTTCCGTCTTTTGAAATTGATGATGTAACACCTGTATAATCCTAGTTTAGGAGGTAATGAAATGATTCAAACACCCCATCCCCAGTGTTTTTCCAGCATGCCATGTAAAATAACCATACGAGGCTTCACTCTCCCTCTTCTGGTTGCCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAGT | |||||||||
gi|270380236|gb|GT764017.1|GT764017 CCXF4633.g1 CCXF Brachypodium distachyon abiotic + biotic stress pool Brachypodium distachyo AGAAGAGAGAGAGTACAGCCT EST sequence (targeted fragment marked with yellow): ATATCCCAAGTAGTGTAGTGTGCAAAGGTCCTCAAGAGTGGGTGTTAGGGTCGCCGCCCGTAAAATCTCTACATTCTGCTACAACATCCACAGCTGCAAATTTGAAGTGCAGGAGGCTACCTTCTGGCTGTGTCATGCAAGACACTCCCAATGGCTTCTGCAAGGAGTACAAGATCTGCTCCATATCTGGAATCCATATCAAGATAAGTAGTCCTACTGTACTCTCTCTTTTCTGATTGCTAGGAGTATACTGTATATATGCTGATTGCTGTATATGTTGGAGATATGCCCTAGAGGCAATCATGTGATGATGTTATTTCCTATGTATTCATGAGTTATTTGTCCTTGAACATCATCACTGATATGTATCAATAAATACGTGATTTGTTTGTGAAACTATGTATTCTATGATGTTGTTCT | |||||||||
gi|270437558|gb|GT821334.1|GT821334 CCYO6438.b1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cDN AGAAGAGAGAGAGTACAGCCT EST sequence (targeted fragment marked with yellow): GAGAAATCTACATAATTCATCCCAAGAAGAACCCCAACCACCTTCTTCGCTTCTTCTTCTTCTTCGAGCTCGCCGCCGCCTGCCTGTCCTCTTTCTCTTCTCATGTCGATCTGACCCGGGAAAGAAGAGCAGAGAGATCAGCTGGGCACCAATCGCCGGCTGCTTCAGAGTGCGGTGCTCCTGAAGATAAATTCCTGCGCTGCATGTAGAGTATTTCAAGGCTACCATACCAAGTGAGGATATGAGCTGGTGTTGTATTCCAAGATCCAGGGAGAATTTTCCTCTGAAAAGAAGATCCAGGGAACAGGAGAATTCTTATTCTCATAGCATTGGCGGCATTTCAGCTGAAAAGAACATAAGGCTATTCTCTTATTCTGAGTTGAGATCAGCAACAGACAACTTCAACCGCAGCAATAAAGTCGGACGAGGTGGCTTTGGGACGGTATATAAGGGAACCATTAGGAACAGACGAGATGTTGCGGTGAAAGTTCTTTCTGCTGAATCCAGACAGGGCACCAGAGAATTTTTGACAGAAATTGATGTTATCAGCAATGTGAAGCATCCTAACCTCGTTGAATTAATTGGCTGTTGCGTCGAAGGAGATCATCGAATTTTGGTGTATGAGTATCTAGAAAACAGCAGCCTTGACCGTGCACTTTTGGGTTCTAACAGTGAACCCGCTAATTTCACTTGGGAGCATAAGATCAGCCATATGCACTGGTGTTGCTAGAGGTCTTGCGTACCTTTCATGAAGAGATCGCATCACCAATTGTACACAG | |||||||||
gi|270450620|gb|GT833910.1|GT833910 CCYO15032.b1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cD AGAAGAGAGAGAGTACAGCCT EST sequence (targeted fragment marked with yellow): CATTCCAACTGCATGTTTATACTGGGTCATTACGTCATCCAAATTCAGGGATTGTGGAAACGGGCTAGTAAGAATAGGGAAACATATATTTGGAGCCTACTTACTTGCACTAAGTCCAGGATCCTGGCCGCATTAACATCGTTTACAAGCTTTGAAGCGCGTCAAGAGATGATCTCTTCACTAAACGAAGGCTATATTCTCTCTCTTGATCCTTGGTCTTCCATGTCAGCGAAAAGTCTACATGGTAGGAGGATCGGAAGGCTGGCATGAAATAATTGTAATTGTACAGGCCCTTGTGGCTTGTAGTGGCTATGTACTGGGCAAAATATCTGATTTGATAATGAGATGCTCTGAACAAGGAAGGGCTGTGCTCCTTACATATCCTCGGTGACTCAAATAGGAAAGGAGAAGCATCTCTTTTGCCAAGATAACAATGTTCCCAGAAGGAGTCGTCTGGATGCTTGGTGGGGAACGGTGCTACTATCTCCCTCTGGAATGATTCTTGGCACTTCTATGCTAGCTGTTTCCCTCCCTATCGTCGTAGCTTCGTCCTTTCTGCCATCTGGAACGCAACTGTCCCTAAGATCAAGGGCTTCAGCTGGCTGCTGCTTCTTGACCGGCTCAACACCAGAGACCTCATGGATCTCAGATTGTTGGGCCTCCTTGGGTGGAAATTCTTTGGCCCAATGGTTCCGTATGGCCAATCTTCCCTTGCAAACCCCTGCGCTTCAGAATCTTCTTCACGGCTTGTTGATATCTGGAAGCAGCGCAATGCTTTGATTTTCAACCAAATTCCCGGCCTC | |||||||||