| mature miRNA: AGAATCATGAAGATGATTAA species: Artemisia annua database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|159689112|gb|EY068722.1|EY068722 CATG1870.rev CATG Artemisia annua, Tanzanian, from Sandeman Seeds, 2+kb Artemisia annua cDNA AGAATCATGAAGATGATTAA EST sequence (targeted fragment marked with yellow): GATACATGTTTGGCTTATTCAGTTTCATGAGTCTGCAAACTAAGTTCAAAGTAATTAGGTCTGTATTTTTTGGTATACCTGGGTTTTCGACTCGACATTGCGAGCGGACTAATCCCAGAGCGACTACCCTTTTTGGATAGCCCGGAATCTGCATTTTGATGATACAACAAATGAAATAACTTCATAAAAATTGAAAACATTGAATCATGAAAGCAACTTCAAACAGTGAATCATGAATGCAGCGCCAAACATTGAAAATTACCTTCTAGACTTCCAGTTATTATAAGAATGGTATATTTGACTTTTATTGTAGAAGACTAATGGGTTTTATTGGGCCCATCAAATATTTAACTGCCTGTGACAAAGTTAACGGCACTCATGACCTAGATAAGTTAACGAATTGCTGTAAAATGACCCCCTTTCCAAGTTAGGCAAGTTGAAGGTAGTAAAATAGATTTTGGCATTTTTTTTTATAATCTTTTATAAGTTATGCCTGCTAAACAAATATTATTTTTTAAGTAGCTTATTTTTAAAAAAATAAGCATAATCTCTCAAGAATCTGGTATACCAGACATACCTACACCTAGGGGTGTTATTCAGGTTGACCCGGTTGAGTTCGGGTCAATTCGGGTTAAGGCTAAAAAAAATATCCGAACCTGACCTTGTTTAGAACTCGGGTCACTCGGGTCGGGTCAAGTTGGGTTCGGGTCAATTCAGGTCGGGTCTATTCGGGTTCGGGTCTAGGCCGTTTAAATATGATACAATTTTGGTGTTCAAACTTGAAATTCG | |||||||||
gi|159630827|gb|EY071261.1|EY071261 CATG3690.rev CATG Artemisia annua, Tanzanian, from Sandeman Seeds, 2+kb Artemisia annua cDNA AGAATCATGAAGATGATTAA EST sequence (targeted fragment marked with yellow): TAGTAATGATCAACAATAGTAAAAATCAAACACTTCCCCTTGAGTGGTGCATGAACATCAAATGATTAAACACATCATTAGATACTTCCCCTGAAATCAATGTGTTAACCATCTTCATGATTCTTCAAATCTGTAAGCTCCTTGTAATGATCACTGATGAAGAAAACCAAATATAACAAATATCCTTCTGTGTGTGTAATCCAAAACCAATCAATCAAACTTATATATATACTTCCCCTTACTGTTCGTAAATCATGCATATATATTGAACCATAAAGCTCTTTTCTTGTCTCCATAAATCATCTTTAATCACAGCAGTACGTTGTAAAAACACGCAACAGTACTTTGAAAAACATACGCAGTACTTTGAATTTAATTTGCAGCAGTACCTTGGAGTATACGAGCAGTACCTTCATTCGAATCACGAGCAGTACTTTGATTAAAAGAGCAGCAGTACTTTGATAAAACTTGAAGCAGTACTTTCGATCAATGGAACAGTTCTTTGAAAACAATGGAGATAGCAGTACTTTGGAGTTGGAGCAGCACCTAAAAAACTTTCTGGGCAGCAGTAGAATACGAGAGCAGCACCCAGGCAAACATTCAACCAATAGAATCCCTGTAAATCTGTTCCATGTCGCTGCATCTGTTGTCCTTTATTAATTAATAAGGACTTTCAATTTAAATTTCATTCGCTTCGG | |||||||||
gi|159679531|gb|EY051485.1|EY051485 CATC3189.fwd CATC Artemisia annua, Tanzanian, from Sandeman Seeds, 0.5-1kb Artemisia annua c AGAATCATGAAGATGATTAA EST sequence (targeted fragment marked with yellow): CGACGATTCGAGTGACGAGGGCTATGGCATAGACTGAATCATTTTCTTGATTCGTAGTTTTATGTTTAATTATCGTAGTTTAATTTAGATGTTTTATGATTAATTATCGTAGTTTAATTTAGATGTTTTATGTTTAATTATCGTAGTTTAATTTAGATGCTTTTTGTTTAATTATCGTAGTTAATGTAATTTGCGGTTAAGTATACTAGTTAATGTAATTTGTGTTTTATAAATGTTTATGTTAGTTTTTAAATGAAGTATTTAGTAAAGTTTGAGGTTGAAATTGAAAATAATTGAGGTGAAGGTGAGTTAAGGTAAGTTATAAGTGAGTTATGGTACCATGGGGTTTTTTGGTGAGTTAAGGTTAAAAGGTTAAAGCTGCACGTGACGCTGACGTGGCAGTGAGTTATGGAATAACTCATGGGCATGTTACCGCTTGCTCTTAAGAGACTAATTAAGAGTTCATATAGAATTACTTAATTTAGTAAACACCCCCTATAGCAAAATATCACAAGGAGTAACATTGATGGTTTATAGAAGGAGACGAGATAATTGAAACTACAAGAAACCCAAGCTTTGCAGATAAGTCAATTACAAATTCGCTTAGTAAAAAAGTCTATGAGATGAAGAATGGATACATTAACATCCCTTTAAAC | |||||||||
gi|159190099|gb|EY032915.1|EY032915 CAIU652.fwd CAIU Artemisia annua leaf Artemisia annua cDNA clone CAIU652 5', mRNA sequence AGAATCATGAAGATGATTAA EST sequence (targeted fragment marked with yellow): GGATCCTACTTATGTTGNGGCACCAGTTTTGAGTTCTCGTTCTGGTCGTCAGGAAATGAAGAAGCTTTTTGCAGGTATAACCTTCTACCTCCTCTTAACACAACTTCAAAAGTCGCCAGTTTAGTATTTTACCTCGTCATTTTGTATGGTATGTATATTCTTTGAAAACCGATACAATTACTCTTTCTTGACTAGAATGTATTAGGTTCAAGCAACACAAATAGTCTCTATTGTGCACCAGATACGGTCGCTATTTTACTATTCTACCCGCTAGCGGTTTTCATATGTTTTTTTTTCATGGTCATTAGTTTATATGGAAAGTTACCTTGATACACTGAGGTTGCTAATTGACTCTTTTATACCTCTAGCAATTGTCATCTTTATGATTTTCGTGTGTACGTTTTTAAGACCTTAGGATTATAGGTAAAAGTAACTAAAAGGGTTTGTCGAGTTGCCAGTTTACCATTTTACCCCTAGGTTTCTTGGCTCAACTATGAATGTTTTACAGCATGGTACGAAAGGAGACAAATGAAGAAGATATATTCTCCACTACTTGAAGGTCTTCTAGCTCTATACCTTGGATTTGAATGGAACCAGACGAACAACATTCTAGCCCCCATCATCACACACGGGATTTACTCAGCAACGATACTAGGACAGGGGCTTTGGAAGATTCATGATCATCGAAGAAGGTTACGCCAACGAGTCCAACAACTTAAACTTGAGAAAAAGA | |||||||||
gi|159782315|gb|EY079242.1|EY079242 CAZI13705.fwd CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI13 AGAATCATGAAGATGATTAA EST sequence (targeted fragment marked with yellow): GCTATTGAAAAATGCATCTGTGAAGATCTCTCATGGAAAGAGGTACGGTTTGGTAGGTCCTAACGGAAAGGGAAAGTCGACATTGTTAAAGCTTTTGGCTTGGAGGAAGATTCCCGTGCCTAAAAACATTGATGTTCTTTTGGTCGAGCAAGAAATAGTTGGTGATGACAGAACTGCCCTTGAAGCTGTTGTTTCAGCAAACGAGGAGCTTGTAAGGCTAAGACAAGAGGTTGCATCGTTGCAGGAAGTTCCTGAGGGAGAAAATGAAGATGGTGCTGATACAGGAGAGAAACTTGCTGAATTATATGAACAATTGCAGATAATGGGTGCAGATGCGGCTGAAGCTCAAGCTTCAAAGATTCTTGCTGGTCTAGGGTTTACAAAAGTTATGCAAGGCCGTGCTACACGGTCATTTAGTGGTGGTTGGAGGATGAGAATTTCATTGGCTCGCGCTCTTTTTGTGCAACCAACTTTATTATTATTGGATGAGCCGACCAATCATCTTGATCTTAGAGCTGTTCTTTGGTTAGAGGAGTACTTGTGCAGATGGAAGAAAACTCTAATTGTTGTCTCACATGACAGAGACTTCTTAAATACCGTCTGCAGTGAAATAATTCATCTTCATGATTTGAAACTTCATTTGTATCGTGGAAATTTTGATGATTTTGAAAGTGGGTATGAGCAACGT | |||||||||
gi|159773420|gb|EY113951.1|EY113951 CAZI8608.rev CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI860 AGAATCATGAAGATGATTAA EST sequence (targeted fragment marked with yellow): TGACCTTCGTGAACTGGCTTGACGAAGAACTTTCATTTTTGGTTGACGAGCGTGCGGTTCTGAAGCACTTTGACTGGCCAGAAGGGAAAGCAGATGCACTACGAGAAGCTGCATTTGAATATCAAGACCTAAAGAAGCTTGAAAAGCAAGTGTTTAATTTTGTTGATGATTCTAGTCTCGCTTGTGAACCTGCATTGAAGAAAATGTATAAGTTGCTAGAAAAAGTGGAGAATAGTGTTTATGCACTACTACGTACAAGGGATATGGTTATGTCAAGATATAAAGAATTTGGTATCCCAGTTAACTGGTTGCAAGATTCGGGTGTTGTAGGCAAGATCAAGCTTGCGTTTGTGCAATTGGCTAGGAAATACATGAAGCGGGTTGCATCAGAACTTGATGCATTGGAAGGACCTGAAAAAGAACCAAACAGAGAGTTTTTGGTGCTTCAGGGTGTGCGTTTTGCTTTTCGTGTTCATCAGTTTGCAGGAGGATTTGATTCAGAAAGTATGAAAGCATTTGAAGAACTGAGAAGCCGTATGAACAAACAAACAAATGACGAAAGTACGCTAGAAACGTGAGCGTTACAAGATTTTTCTTTCCTTCGTATATTTTCATGATGATATATGTTATATTTTAGTCTATTTATGTTACTGTCTCCATTCATATACCTTCACTTAAATTATTTTATACACCCGAAAAGTCAAATCC | |||||||||
gi|283964512|gb|GW333934.1|GW333934 GSTSUB_UP_004_B07_20AUG2004_061 GSTSUB Artemisia annua cDNA, mRNA sequence AGAATCATGAAGATGATTAA EST sequence (targeted fragment marked with yellow): ACAAAAATTTCAAACAAGGAACCTAATCAATTAATGAGATAAGCTTCACCATACCTTCCCCCTCATCCCCCATACCAATCGGCCATAAATCAAGGGTCTTGTCCCCAAGATATTTTTTTACCTTGACTACATATACATGTGTTACTCATACAAGCACATTCATTTACCTACACATCTATTACACCTACATTCACACAAAGAAAGAAAAATAAACCCAACCTCCCAGACCCTTGAAACATTCGACACAACCAAAGAAGGAGAAAGGAAAAAGGAAGCTAGTTGGGCAAAAATCAAGTATACTAAGGGTAGATCACAAGGGCTAGAGTGCTAATATTGGGGTTATACAAGTGTTTCATAAGTCTCATCTCACTAATCAACCTTGTAAGTAAACTTACTAATACTTCATGGTTTTCATGATTTTCATGCTTGTTAAGTATCTACACTTGTTTATCACTTGCTACATGTTGATAAATTTTAAAGATACCATGATCTCTTAGCAAAAGTTATGTCTAAAATAAACTTTTATAACAAGGACATTTTATATAAACATATATGTTAATAAATGTGTAGATCTAAATATTTTTGAAGAATATATACATGGACTTTGAATATTGCTAGGTTTATATGTAGATCACTATACTTTAGTTGGGAAAATA | |||||||||
gi|159651072|gb|EY047631.1|EY047631 CATA759.fwd CATA Artemisia annua, Tanzanian, from Sandeman Seeds, 0.8-1.5Kb Artemisia annua AGAATCATGAAGATGATTAA EST sequence (targeted fragment marked with yellow): CTTATAAGTTGAATCAATCAAATTCAATTTTTCCCGCTCTATCTCAGAGTATCCATTCACACGAAACTGATCTGCTTCTATTTCTACTTTACGTAAGCGAGTCCGGGCTTTTTCCAGCTGTTCGATGGCCCCCTCGCGCAATTCTTCTGAATTTTTAATCGTCTTCAAGATTCTCTGTTTTCGATTATCTAATAAATCACTTAATGAAAGTAGATTATCTTTCCATTCATTTCAAAAATTCCATGATCCCTTCCCGAACCAAACATGAATCTTTCGATTCATTTGGCTCTCACGCTCAATGTAAATTACCATATCTTTCTTGTTAATGTAATGAGCCTATCCTCGATTCTCTTGTCATATTCCAAAATGAAATCAAAATCTCAAACTAATCCAAGACAAAAAAATTCGGAGGACTCTTCTGACCAAACAAAAAATATGTAATTGTCAGCAAAATTGTTTACTTTTTTAATCCAAGAAGTTTTTCTTACTTTATACACAATACATAGGTCATCGATTCAGCATTGGCTAAAAAAGGGGATAAAATCCCCAATAAGTAGTTCAAATCATTTTATCAATATGAGTGTTCTCTATTGATAAAAATTATTTATTTGAGACCATCTCTATATTAACATAGTGGTAGAAAGAGTACCATGCTGCGTCTGGACTTCAAACAGTTTAGCTTTAACCATGTT | |||||||||
gi|159672073|gb|EY102334.1|EY102334 CAZI25712.rev CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI25 AGAATCATGAAGATGATTAA EST sequence (targeted fragment marked with yellow): GAATCAGGCTCAGACATTTTCAGCAAACGGGAAGTAATACAGAAACTTAGACAACAGCTAAAGAGAAGGGACGATATGATACTGGAAATGCAGGATCAAATTGCTGAGCTGCAGAATTCTTTAAGCTCTCAACGTTCTCATTCTGACCATCTGCAATCGCTCCTGGACGGTGCAAATAGGGATCTTTTTGATTCAGAAAGGGAAATTCAGAGGCTAAGGAAGGCAATTGCTGATATCTGTGTTGGACAACCGGGCCCCACTGATAAACCGTATGGTAATTCAAATGGGTATCTAGACATTGACGGCAGCTTGGACTTGTTGGATAAAGGGAGAGGAGGAAGTGAAGGTGATAAAATCGATATGCTGAAAAGGGAAGTAGGGGAGTTGAAAGAATTGATAGAAGGGAAGGATTATCTTCTTCAGAATTACAAGGAACAGAAATCTGAGCTTTCGTTGAAGGTTAAGGAGTTGCAGTGCAGGTTGGATTCCCAGCTACCGAATATTTTGTAGGTTTCGGTTTTCTTTTTTCACTTCTTGTGTATTCTTCCTTAGCTTACTTCTCTGATGAATCGGAAAGCTTTAGTTGCGTGTTTTTTCTTTTATCGTCTTTATGATTTTTGTGTGAATACGTAGAAGAAAACCATGGATGGCTGAATTATGGATGGCTGAATTACGGT | |||||||||
gi|159703837|gb|EY081072.1|EY081072 CAZI14637.rev CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI14 AGAATCATGAAGATGATTAA EST sequence (targeted fragment marked with yellow): TTTCAAATATGAAAATATCCCAGGGTTCATTGCTCCGTAAGTAGGTGCTCCATATGGGTTACTTGAACATGAAAATGGGTTCAAACCGCAAGATGCCAAAGAGCTATTCAATCATCGTCACTCACTGTTGCGTAGCATCACTGACAGAACACTTGTGGCACTAAAAGAGCGTTTCCCCATACTGATGTCGGCTCCTTCATACCCTTTACCGACGCAAGTGAAGTTAGTGGTTGCAGCATGTGCTTTACATAATTACATACGTGACGAGAAGCCAGATGACAGCATCTTCAAAATTTATGAGCATGAAGGTTGTGTTACACAGTTGGATGATTCAGCGGTACAGCCAGTTGGCTTTGAAAAGCCAGAGATGATGACAAATCCTGATAGTCGGATGATGGATGCAGATTTACCATTTGATATTCAACAGATTGAAGGTGCCTCAAAATTGCGGGACACTATTGCTGCTGAGATATGGAATGATTATGTTCATGATTTTCCAATTACGGAAGCATAGCATATCATTGACTTATGAGTTTTTCTTTTTAGAAGGTACATATTTAGCTTCGATGTAGGAGGCTGCTATATGCTTTATTAGACGGAGAACAAAGAATGGGGGCAACCGACATTTTTTATGCCATGAGAATGTATGATCGAATGACATGGGGATTTTTT | |||||||||
gi|159702665|gb|EY099753.1|EY099753 CAZI24415.fwd CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI24 AGAATCATGAAGATGATTAA EST sequence (targeted fragment marked with yellow): CCAACACACTTAGATAGATACTATACTTGTCTTCAACTCATGGTTTTCTTTTAACTTTTATATTATGACGGTTTGGAGTAGTTATAGTTACAGTTATGGCTGGGGAAATTGAAGAACCGTTTCGAATGAATTTTCAGGCTGACCTCTTACATTCTGGTTCAATCTCCTTTGGAAGATTTGAATCTGAATCATTATCTTGGGAAAGGAGATCAATATTCTCGCACAACAGATATCTTGAAGAGGTCGAGAAATACTCAAAACCAGGTTCAGTTACAGCGAAAAAGGCTTATTTTGAAGCCGAGTTTAGACGGAAAGCCCTTTTGAGGCAACAATCTGCAGAATGCCAAAATGAGGGAGAGCTTCCTACAAATACAAATAATGACCTTCATGATTTTGAAGAAACTGATATTGGTACTGAGAGTCCTTCCAGTTCCAATTCTTCAGTATGCAACCAAGAAACAAAAATTCAACAATATAAAAGAGATGGCTTTGAAGCTTTATATGCCGAGACTGGAAATGTCAATGAGACTCTTCATCTCACAGGATACGATGAAGAAATTATACGTCAGGAATTTGAAAGTCAAGATTGTGACTTTTTTTCAGTTAAAACTAAGGAAGAGTCTGTTGTAAATATGGTTGATTGTCCGGTTAGTGTTCTTGAGCCTGTAGCTAACAAGGATGATTGTCCGGGCAGTGTTCTTGAGCCTGCTGTTAGCGTGGTTGATTGTCCGGGCAGTGTTCTTGAGGATGTCAGGCTTGATGAAACACATCAAAGTGAAACCGCGAATGTAGT | |||||||||
gi|159767684|gb|EY097659.1|EY097659 CAZI23343.rev CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI23 AGAATCATGAAGATGATTAA EST sequence (targeted fragment marked with yellow): GAATCAGGCTCAGACATTTTCAGCAAACGGGAAGTAATACAGAAACTTAGACAACAGCTAAAGAGAAGGGACGATATGATACTGGAAATGCAGGATCAAATTGCTGAGCTGCAGAATTCTTTAAGCTCTCAACGTTCTCATTCTGACCATCTGCAATCGCTCCTGGACGGTGCAAATAGGGATCTTTTTGATTCAGAAAGGGAAATTCAGAGACTAAGGAAGGCAATTGCTGATATTTGCGTAGGACAACCGGGCCCCACTGAGAAACCGTATGGTAATTCAAATGGGTATCTAGACATGGACGGCAGCTTGGACTCGTTGGATAAAGGAAGAGGAGGAAGTGAAGGTGATAAAATCGATATGCTGAAAAGGGAAGTAGGGGAGTTGAAAGAATTGATAGAAGGAAAGGATTATTTTTTTCAGAATTACAAGGAACAGAAATTTGAGCTTTCGTTGAAGGTTAAGGAGTTGCAGTGCAGGTTGGATTCCCAGCTACCGAATATTTTGTAGGTTTCGGTTTTCTTTTTTCACTTCTTGTGTATTCTTCCTTAGCTTACTTCTCTGATGAATCGGAAAGCTTTAGTTGCGTGTTTTTATTTTTTATCGTCTTTATGATTTTTGTGTGAATACGTAGAAGAAAACCATGGATGGATCAATTACGATACATGGAACCATAGTAGTCTCAAAAAGTGAGCAGAGAATACTTATGTTTTGATGTT | |||||||||
gi|159631682|gb|EY079372.1|EY079372 CAZI13772.fwd CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI13 AGAATCATGAAGATGATTAA EST sequence (targeted fragment marked with yellow): ATTATACTAGAAACAGCACGTACCAAAGAAACCTAAACACTACCCTCTCTCGCCTTCCTAACACCAACTCTGGCTTTGGTTTCTTTAACAGTTCCACAGGCCAAGCAGGCAGCGATACAGTCCACTCGGTCGCCCTATGTCGAGGTGACGCGAATCTAGATGCGTGTCTTAGTTGTCTTAATGATTCAATTGTCAAACTGCGAGAAATATGTCCTCATCAAAAACAAGCAATAGGATACTACGACTTATGTATGCTAAGATACTCAAACCAGACTGTACTGAATACAAATAAAATTGCGATCTTGTTGAATACACAAAATGCTTCGGATGTTGATCGGTTCAACGAAGCCTTGTCACCTTTGTTAAACAATGTGACAGCTGAAGCATCGGGTGGTGGTTCGCTCAGCAAGTTCGCCACAGGGAACACTCGTGGACCAGGTGTTACAAGAATCTATGCCCTTGCCCAGTGTAATCCGGATTTAACACCGCAGCAGTGCAAGCAGTGCTTGGAAAGTGTAATTAGTGTCTTTACGAATGCGTATAGTGGGAAAATTGGAGGAAGGAGTCTCGTACCTACGTGTAATTTTAGGTATGAGAATTATCTGTTTTTTAACGAGAGTACTCTTTCTATCCCACCACCACCACCACCACCATCGCTATCACCACGACAACCACCGCCTCCAAATTTATCACCAGGAAAAAATACAAGCAAGACACGAACTGTGATAATTATAATTGTTCTT | |||||||||
gi|159629523|gb|EY071251.1|EY071251 CATG3681.fwd CATG Artemisia annua, Tanzanian, from Sandeman Seeds, 2+kb Artemisia annua cDNA AGAATCATGAAGATGATTAA EST sequence (targeted fragment marked with yellow): CTTGGCATTGCTGAGGACGTATTCGTAAAAGTAGGAAAGTTCCAATTCCCAGCTGACTTTGTGGTTGTCGATTTCGATGCTGACCCACGGGTTCCTCTAATTGTTGGACGAGGATTCCTAAGAACGGGTCGAGCTCTCATTGATGTATTTGAGCAAGAAATCACATTACGTGTGGGTAATGAAGCCATAACCTTTAACCTTGACCAAACCTCGAGGTACTCCTCAAATTATGACTCTGTATCGGTTAACCGAATAGATGTCATCGATGTTGCTGCAGAGGAGTATGCTCAAGAATTTCTTGGTTATGTTCATAATTCTTCGGGTGGTGAATCCACTCCTTCTTCTCATCCTATAATTTCCGACTCTTCCCCTTCTCTCACTCCGTTTGAGGGAAGTGATTTTCTTTTGGAAGAGGTCGAGGCTTTTCTCAAAAGTGATTCAGTTCCAGATGGAATTGATAACAATGAGATTGATCTGGAGGGAGATCTTCTTCTCCTCGAGAAATTGTTAAATCAGGACAATTCTCCTCCCCTCCCTCCCGTAGAACTTCATAATGAGGAAATCAAGTCAGTTGAGAAAACTGAAGAATTTCCCGAGGTCGAACTCAAGGAGTTACCTCCTCATCTCGAGTACGCATT | |||||||||