| mature miRNA: AGAATCCTGATGATGCTGCAC species: Picea glauca database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|211876957|gb|CO489697.2|CO489697 GQ0258.B7_I21 GQ025: Annual flush SHOOTS diurnal cycle- trees Picea glauca cDNA clone GQ0258 AGAATCCTGATGATGCTGCAC EST sequence (targeted fragment marked with yellow): CCCCAGCAGCATCATCAGGATTCTCACCCCAAGCACAAACCACTTTAGCCCATCCTTCATTTTGGATGCACAAGTTACAAGGATTTCAATATCCCAGTGGTCAGTCAATGGGTACTCAGCTTTCAGCTCCTAAGCCCTCATCTCAGAGACAGAACTTACATAGCACCGATCCCAGTTCAGGTGGACAAGTCTTGGGTTTGAGCTTAAGTATATCAACGAAATCAATAGCTGAACCGTGCTCCTCCAAAGATAATGACGGTTCGAAGTTCTTGAAATGAGTTTTTGGAGATTGTCATTCATTTGGGGTCAAAGACAGCTGAAATCGCCTATTAAAAAAAAAAAAGGAAAAGAGGCGAATCCGTATTTGCCTGAGTCACTACTTTTTTGTCGTATACTCTATCATTGAGACGCATCCTTAATTGTCTCCATCGTCAAACTTGTTATTATTATTATTATATGATGTAATCCCATGTTTAATTAAAAAA | |||||||||
gi|225917792|gb|GO369844.1|GO369844 GQ04004.B7P1_L03 GQ040 - Shoot tip - Active growth (Normalized) Picea glauca cDNA clone GQ04 AGAATCCTGATGATGCTGCAC EST sequence (targeted fragment marked with yellow): CTGCTCCACGTATAGCACTGTGCCATTAGATGAACACAAGAGAACACAATTCAAATCTAATAAGGCGGAATCCGCAAACTATTCTGAAGTACCGGATTGGAAGAAAACTCGTTTACTGAATACTAGGACTGAAGACTGCAATATCCAACAGACTCAGTTGGGGCAATTGTTCAATGTCTCGCCTTCATCAACGGGCGAGAAGATTTTGTCATTCCAACAACTATCAAACGCCGAAGGAGGGAACAACTTTACGTTCTTGCAGCCTCAACATCAAGTCAAATGCGCAATATCAGACAAGGGGGATCGTCAGGAATTGATTAATATTACTGAGTATAACTCAGTAAGACATTCTCGACCAAGCGAGGATAAGACCGTGAACCTTTTCTCAGAGCAAGCACCTGGTTGGAGTGGAATACATTCCAGATCCATTCTTAATCGCAATCAGGTACCAAACAATGGTAATTATGATTTACAACATGACAGAAATAGACGTGCAGATGGTTCGATTGTATCTTTGCTGCCTCCAGAAAAGACACCAGGCTGGGCTTGGCAATTGCAAGCTGCCGCCACTAGCTTACCAGCTGCTCCAGTATTCGCTAGTGCAGCATCATCTGGATTCTCACCCCAAATAATTTCAGCTGCTGTTCCTTCACATGATTGGCTACAGAAAGCGGGATTCCATTACGTGGACCAGTCCATTGGCAGGACTAGTTTCACTGAAAAGCCCAAGGTTGCATTTCAGGAGGACATTCCTTTGGGCATAGATCACCTCCTTAGCCTAAGCTCAGGTTCCACAACCACCAAATTTAAGGCTCTGGGCTTATCAAGAGAGACGAAGTGATCACTCAGCGGGGCTTTAGAAATGCCTTTCTTCTGAAG | |||||||||
gi|225919198|gb|GO370794.1|GO370794 GQ04011.SP6.r_K11 GQ040 - Shoot tip - Active growth (Normalized) Picea glauca cDNA clone GQ0 AGAATCCTGATGATGCTGCAC EST sequence (targeted fragment marked with yellow): GATGGATTAAATCAAAGCGCCCAAAGCTTGTCATGGGAAGTTCCCTCTTTCCAAAGGTATCAACAATCACCAAGCTTGTCATGTGAAGTTCCCTCTTTACAAAGGTATCAACAATCACCAGGATGGGTTTGACAACTGCCTACAAATAGGCCAGCTGCTCCCCATCCCCCTCCCATGATTGAAAGTGCAGCATCATCAGGATTCTCACCCCAAATATATTCTTCAACAACTAGTCCTTCTCCAGAATGGCTGCAGAAAAGGGGATTTCATTTCTTGTTCCAGCCTGCATTAATGCAGACAAAGAATATTTTGCATTCAGCAACAGCACCAGCTTTGATTAACACTTACGGGAAAAAACCCAGTGACCACTCATTGAACTTGTCACTAGGTTGATCTTCACGTGACAAGTTGGAAGCCTCGTCTTGCATAAGCTTTCGATATGGCCTCGGCAAGCAAATTCTTAGCTAGACATGGCTAACATTTTTGGCATGGCCCGCCCTGGATTGCCATTGTGGCATTGCTATAATTTTACTGTGACTTCCATGTAACCTTTCAACGCAAAAATGGCATATCCCTTGATGAAGATTATTCAATCCAAAAAA | |||||||||
gi|211895254|gb|CO488296.2|CO488296 GQ02512.B7_I15 GQ025: Annual flush SHOOTS diurnal cycle- trees Picea glauca cDNA clone GQ025 AGAATCCTGATGATGCTGCAC EST sequence (targeted fragment marked with yellow): CAGCATCATCAGGATTCTCACCCCAAGCACAAACCACTTTAGCCCATCCTTCATTATTGGATGCACAAGTTACAAGGATTTCAATATCCCAGTGGTCAGTCAATGGGTACTCAGCTTTCAGCTCCTAAGCCCTCATCTCAGAGACAGAACTTACATAGCACCGATCCCAGTTCAGGTGGACAAGTCTTGGGTTTGAGCTTAAGTATATCAACGAAATCAATAGCTGAACCGTGCTCCTCCAAAGATAATGACGGTTCGAAGTTCTTGAAATGAGTTTTTGGAGATTGTCATTCATTTGGGGTCAAAGACAGCTGAAATCGCCTATTAAAAAAAAAAAAGGAAAAGAGGCGAATCCGTATTTGCCTGAGTCACTACTTTTTTGTCGTATACTCTATCATTGAGACGCATCCTTAATTGTCTCCATCGTCAAACTTGTTATTATTATTATTATATGATGTAATCCCATGTTTAATTAAAAAA | |||||||||
gi|211903217|gb|CO489585.2|CO489585 GQ02511.B7_O11 GQ025: Annual flush SHOOTS diurnal cycle- trees Picea glauca cDNA clone GQ025 AGAATCCTGATGATGCTGCAC EST sequence (targeted fragment marked with yellow): GGGGCCGGGGCCCCCCCAGCAGCATCATCAGGATTCTCACCCCAAGCACAAACCACTTTAGCCCATCCTTCATATTGGATGCACAAGTTACAAGGATTTCAATATCCCAGTGGTCAGTCAATGGGTACTCAGCTTTCAGCTCCTAAGCCCTCATCTCAGAGACAGAACTTACATAGCACCGATCCCAGTTCAGGTGGACAAGTCTTGGGTTTGAGCTTAAGTATATCAACGAAATCAATAGCTGAACCGTGCTCCTCCAAAGATAATGACGGTTCGAAGTTCTTGAAATGAGTTTTTGGAGATTGTCATTCATTTGGGGTCAAAGACAGCTGAAATCGCCTATTAAAAAAAAAAAAGGAAAAGAGGCGAATCCGTATTTGCCTGAGTCACTACTTTTTTGTCGTATACTCTATCATTGAGACGCATCCTTAATTGTCTCCATCGTCAAACTTGTTATTATTATTATTATATGATGTAATCCCATGTTTAATTAAAAAA | |||||||||
gi|211882090|gb|CO478128.2|CO478128 GQ0134.B7.1_C01 GQ013: Elongating ROOTS tips - saplings Picea glauca cDNA clone GQ0134_C01 3 AGAATCCTGATGATGCTGCAC EST sequence (targeted fragment marked with yellow): AGACCGTGAACCTTTTCTCAGAGCAAGCACCTGGTTGGAGTGGAATACATTCCAGATCCATTCTTAATCGCAATGTACCAAACAATGGTAATTATGATTTACAACATGACAGAAATAGACGTGCAGATGGTTCGATTGTATCTTTGCTGCCTCCAGAAAAGACACCAGGCTGGGCTTGGCAATTGCAAGCTGCCGCCACTAGCTTACCAGCTGCTCCAGTATTCGCTAGTGCAGCATCATCAGGATTCTCACCCCAAATAATTTCAGCTGCTGTTCCTTCACATGATTGGCTACAGAAAGCGGGATTCCATTACGTGGACCAGTCCATTGGCAGGACTAGTTTCACTGAAAAGCCCAAGGTTGCATTTCAGGAGGACATTCCTTTGGGCATAGATCACCTCCTTAGCCTAAGCTCAGGTTCCGCAACCACCAAATTTAAGGCTCTGGGCTTATCAAGAGAGACGAAGTGATCACTCAGCGGGGCTTTAGAAATGCCTTTCTTCTGAAGCGAGGTTGAAGTTCATGAAAAGTAAGCATGGCTTGTGCTTCGTACAGAAGCCTGAAATCAACGCAACATGCCTTTCTTTTGGTCACTTGTTTCGATTGTATTGTTACCATACGTTATATGGGTTTTTTTTCTATCGATATATGCTATAAACAAATCAGACATCTAAACTACAGTATCCTAGTTTTGGGAGTCGTGGGATTCTTTTTTTTGCGGGGATTATAATAAAGTGTTCTGATCTGTTTACTTGGTCTGTTGTAGTAACTCGATCTCCATGACCAGAGTTGGAATGTATTTGTATATAAAATGGTTTCAACTGTTGAACTTAAAAAA | |||||||||
gi|211877099|gb|CO489278.2|CO489278 GQ0258.B7_J12 GQ025: Annual flush SHOOTS diurnal cycle- trees Picea glauca cDNA clone GQ0258 AGAATCCTGATGATGCTGCAC EST sequence (targeted fragment marked with yellow): CCCCCCCAGCAGCATCATCAGGATTCTCACCCCAAGCACAAACCACTTTAGCCCATCCTCCATTTTGGATGCACAAGTTACAAGGATTTCAATATCCCAGTGGTCAGTCAATGGGTACTCAGCTTTCAGCTCCTAAGCCCTCATCTCAGAGACAGAACTTACATAGCACCGATCCCAGTTCAGGTGGACAAGTCTTGGGTTTGAGCTTAAGTATATCAACGAAATCAATAGCTGAACCGTGCTCCTCCAAAGATAATGACGGTTCGAAGTTCTTGAAATGAGTTTTTGGAGATTGTCATTCATTTGGGGTCAAAGACAGCTGAAATCGCCTATTAAAAAAAAAAAAGGAAAAGAGGCGAATCCGTATTTGCCTGAGTCACTACTTTTTTGTCGTATACTCTATCATTGAGACGCATCCTTAATTGTCTCCATCGTCAAACTTGTTATTATTATTATTATATGATGTAATCCCATGTTTAATTAAAAAA | |||||||||
gi|225917636|gb|GO371813.1|GO371813 GQ04109.B7.r_A15 GQ041 - Shoot tip - Dormant (Normalized) Picea glauca cDNA clone GQ04109_A1 AGAATCCTGATGATGCTGCAC EST sequence (targeted fragment marked with yellow): TAGAAGCAAGACTGCATACTGTACTGTGGATTAATTCACTTTGATATCTATAGAATTTTTTATGATGTATTTGGTACTGTTTCTTTACTAAGATTTTCGTTAAGTTATCATACCAGGTATGTGTACTTGGGTTTATTCGACAACGAAGTGGAAGCTGCAAGGTATGTACGCTCTAATGCAGTAGAAGTTCAAATATTTAAATGGAGAAAGCTGATGTTCATGACAAGAAACAATATGTGATCTGTTGTTCATTATAAGTTTCTGAAATTTCCATATCTGTGATGTCTTGTTCATTATAGGTTTTTGGGATTTCCAATATATGATGTGTTTTTCATTATAGGTTTTTGAAATTTCCATATCTATGATAATTTAGAATAAGCAATTGGAATGTTCCAGGGCATATGACAAGGCTGCAATTAGATGCAGTGGGAGGGAAGCAGTTACCAACTTTAGCCCTGAGCTATATGAAAGTGAATTAGCCCTTACAGAGGACAAAGGTCATGATCCAGATCTGGATCTTAGTCTTGGTAATTCAGTTCCAAAAGATGGCTCTTTGGTCTCAAAGGACAATACCGATGGCCCAATGAGATCAGAGTCTGATTTATGCACTTTGTCTGAACCTGATTGGAAGACATCCTGCCTGATTAAGCCTACGGTTCCAAACCTTTTGGATGGATTAAATCAAAGCGCCCAAAGCTTGTCATGTGAAGTTCCCTCTTTACAAAGGTATCAACAATCACCAAGCTTGTCATGTGAAGTTCCCTCTTTACAAAGGTATCAACAATCACCAGGATGGGTTTGGCAACTGCCTACAAATAGGTCAGCTGCTCCCCATCCCCCTCCCATGATTGAAAGTGCAGCATCATCAGGATTCTCACCCCAAATATACTCTTCAACAACT | |||||||||
gi|225911442|gb|GO363269.1|GO363269 GQ03238.SP6.r_P08 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03238_P08 AGAATCCTGATGATGCTGCAC EST sequence (targeted fragment marked with yellow): GTCCTTTCCCAATTACAAGCTATACAGCCCCACCGGGGGATTGCAAGGGCAAGGAGGCAGTGGCCTCTCCCCTCTACTTTCTTCCTCCATTGAACATCAACCAGGTTGGCCTTGGAAATTTCATACTAATGGGTCATCAGCTTCAATGTTGGCAGCAGCATCATCAGGATTCTCACCCCAAGCACAAACCACTTTAGCCCATCCTTCAGATTGGATGCACAAGTTACAAGGATTTCAATATCCCAGTGGTCAGTCAATGGGTACTCAGCTTTCAGCTCCTAAGCCCTCATTTCAGAGACAGAACTTACATAGCACCGATCCCAGTTCAGGTGGACAAGTCTTGGGTTTGAGCTTAAGTATATCAACAAAATCAATAGCTGAACCGTGCTCCTCCAAAGATAATGACGGTTCGAAGTTCTTGAAATGAGTTTTTGGAGATTGTCATTCATTTGGGGCCAAAGACAGCTGAAATCGCCTATTAAAAAAAAAAGGAAAAGAGGCGAATCCGTATTTGCCTGAGTCACTACTTTTTTGTCGTATACTCTATCATTGAGACGCATCCTTAATTGTCTCCATCGTCAAACTTGTTATTATTATTATTATATGATGTAATCCCATGTTTAATTAAGCGTACGCTAACCATTATTCGGCTGCTTGCCCGGATGCCTAATTTTCATATATTTTCTGTAGTGAACTGTGGTATTATTAGGTATTAAATATTTAGCCAAAAAA | |||||||||
gi|225919882|gb|GO371900.1|GO371900 GQ04109.SP6.r_A15 GQ041 - Shoot tip - Dormant (Normalized) Picea glauca cDNA clone GQ04109_A AGAATCCTGATGATGCTGCAC EST sequence (targeted fragment marked with yellow): AAAGGTATCAACAATCACCAAGCTTGTCATGTGAAGTTCCCTCTTTACAAAGGTATCAACAATCACCAGGATGGGTTTGGCAACTGCCTACAAATAGGTCAGCTGCTCCCCATCCCCCTCCCATGATTGAAAGTGCAGCATCATCAGGATTCTCACCCCAAATATACTCTTCAACAACTAGTCCTTCTCCAGAATGGCTGCAGAAAAGGGGATTTCATTTCTTGTTCCAGCCTGCATTAATGCGGACAAAGAATATTTTGCATTCAGCAACAGCACCAGCTTTGATTAACACTTACGGGAAAAAACCCAGTGACCACTCATTGAACTTGTCACTAGGTTGATCTTCACGTGACAAGTTGGAAGCCTCGTCTTGCATAAGCTTTCGATATGGCCTCGGCAAGTAAATTCTTAACTAGACATGGCTAACATTTTTGGCATGGCCCGCCCTGGATTGCCATTGTGGCATTGCTATAATTTTACTGTGATTTCCATGTAACCTTTCAACGCAAAAATGGCATATCCCTTGATGAAGATTATTCAATTCAATCTTACTATTTTCCTTACTGTTGTAAATCATTGAGAGAACCGCTATTATCAAGCTAAAAACTCAATCGAGGTTGTTTGCTGAGTAATAGTCTTGGGACTCTTGTTGCGAATTTATATTTCAATTAAACAACATTATTTTTCCCAAAAAA | |||||||||