| mature miRNA: AGAATCCTGATGATGCTGCAC species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|9856076|gb|BE601003.1|BE601003 PI1_95_G03.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence AGAATCCTGATGATGCTGCAC EST sequence (targeted fragment marked with yellow): GCACGAGGATATCTTGGGCTATTCGACAGCGAAGTAGAGGCTGCAAGGGCTTACGATAAGGCCGCAATCAAATGCAATGGTAGAGAGGCCGTGACGAATTTCGAGCCAAGCACATATGATGGGGAGCTGCTGACTGAAGTTAGCACTGAAGTTGCTGAAGTTGATCTGAACTTGAGCATATCTCAACCGGCATCTCAGAGCCCCAAAAGAGATAAGAGCTGCCTAGGCCTGCAGCTCCACCATGGATCATTTGAGGGCTCCGAATCGAAAAAAACAAAGATTGATACTCCCTCTGAGCTGTCGGGCCACCCTCATCGGTTCCCTCTTATGACTGAGCATCCACCGGCCTGGCCTGCTCAATCTCACCCCTTCTTCACAAATCATGAGAGTACATCATCGAGAGACCTTAACAGGAGGCCTGAGGGGGGTGCTCCTAGCTGGGCATGGAAGGTGACAGCAGCTCCTCCTCACACCCTGCCATTGCCGCTGTTCTCTTCGTCATCGTCATCCGCTGCAGCATCATCAGGATTCTCCAATACCGG | |||||||||
gi|9850245|gb|BE595172.1|BE595172 PI1_46_G11.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence AGAATCCTGATGATGCTGCAC EST sequence (targeted fragment marked with yellow): GCACGAGGATATCTTGGGCTATTCGACAGCGAAGTAGAGGCTGCAAGGGCTTACGATAAGGCCGCAATCAAATGCAATGGTAGAGAGGCCGTGACGAATTTCGAGCCAAGCACATATGATGGGGAGCTGCTGACTGAAGTTAGCACTGAAGTTGCTGAAGTTGATCTGAACTTGAGCATATCTCAACCGGCATCTCAGAGCCCCAAAAGAGATAAGAGCTGCCTAAGCCTGCAGCTCCACCATGGATCATTTGAGGGCTCCGAATCGAAAAAAACAAAGATTGATACTCCCTCTGAGCTGTCGGGCCACCCTCATCGGTTCCCTCTTATGACTGAGCATCCACCGGCCTGGCCTGCTCAATCTCACCCCTTCTTCACAAATCATGAGAGTACATCATCGAGAGACCTTAACAGGAGGCCTGAGGGGGGTGCTCCTAGCTGGGCATGGAACGTGACAGCAGCTCCTCCTCACACCCTGCCATTGCCGCTGTTCTCTTCGTCATCGTCATCCGCTGCAGCATCATCAGGATTCTCCAATACCGCCACGACAGCTGCCCCATCGG | |||||||||
gi|160713056|gb|EH411223.1|EH411223 RTHAIR1_65_H02.g1_A002 Sorghum bicolor BTx623 Root hair Sorghum bicolor cDNA clone RTHAIR1_6 AGAATCCTGATGATGCTGCAC EST sequence (targeted fragment marked with yellow): CTTCGTCATCGTCATCCGCTGCAGCATCATCAGGATTCTCCAATACCGCCACGACAGCTGCCCCATCGGCCTCCCTCCGGTTCGATGCACCGCCATCGTCGTCATCGAGCCATCATCATCGCCGCTGAGAATCAAGAAGCCACACTGTAAATCTGCTGGGAAGCTGGCATTTTTCCCCCCTCTGGGCGTTGCAACTTTTTCGGTTTTGCGCCGGCTGGGGTGGTTTCTTGTAGTGGATCGATTGGATTCTTCATAACTGTATTTGCACACTGTCATACTGCCCAAGTGAAAATGCTCCTCTCTTTACACTACACAGTACACACACTGCTGCTCTTGGAGCTACTGTTGCTGCTAGAGATTGACTAACTTAAGCATCTGAGATACTTTGATTGATCTATATATACATTGTGTAGAGAATATATCATTGCTGAAACTATTGACAGAAGTATATACAGGTTTGTTCCAGGTCACTCACCACTAGCTTGGTAATTTGTAATCTCTGCTACAAGGGTTCTTTTATAGCTACGTCATGTAATTCTCTTAATCTTAATGAAACA | |||||||||
gi|160710010|gb|EH410468.1|EH410468 RTHAIR1_54_A03.g1_A002 Sorghum bicolor BTx623 Root hair Sorghum bicolor cDNA clone RTHAIR1_5 AGAATCCTGATGATGCTGCAC EST sequence (targeted fragment marked with yellow): GGGGGGTGCTCCTAGCTGGGCATGGAAGGGGACAGCAGCTCCTCCTCACACCCTGCCATTGGCGCTGTTCTCTTCGGCATCGTCATCCGCTGCAGCATCATCAGGATTCTCCAATACCGCCACGACAGCTGCCCCATCGGGCTCCCTCCG | |||||||||
gi|160712604|gb|EH411646.1|EH411646 RTHAIR1_70_H12.g1_A002 Sorghum bicolor BTx623 Root hair Sorghum bicolor cDNA clone RTHAIR1_7 AGAATCCTGATGATGCTGCAC EST sequence (targeted fragment marked with yellow): GTTCCCTCTTATGACTGAGCATCCACCGGCCTGGCCTGCTCAATCTCACCCCTTCTTCACAAATCATGAGAGTACATCATCGAGAGACCTTAACAGGAGGCCTGAGGGGGGTGCTCCTAGCTGGGCATGGAAGGTGACAGCAGCTCCTCCTCACACCCTGCCATTGCCGCTGTTCTCTTCGTCATCGTCATCCGCTGCAGCATCATCAGGATTCTCCAATACCGCCACGACAGCTGCCCCATCGGCCTCCCTCCGGTTCGATGCACCGCCATCGTCGTCATCGAGCCATCATCATCGCCGCTGAGAATCAAGAAGCCACACTGTAAATCTGCTGGGAAGCTGGCATTTTTCCCCCCTCTGGGCGTTGCAACTTTTTCGGTTTTGCGCCGGCTGGGGTGGTTTCTTGTAGTGGATCGATTGGATTCTTCATAACTGTATTTGCACACTGTCATACTGCCCAAGTGAAAATGCTCCTCTCTTTACACTACACAGTACACACACTGCTGCTCTTGGAGCTACTGTTGCTGCTAGAGATTGACTAACTTAAGCATCTGAGATACTTTGATTGATCTATATATACATTGTGTAGAGAAAAAAAAAAAAAAAAAAAAAA | |||||||||