miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: AGAATCCTGATGATGCTGCAG
species: Gossypium hirsutum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|109879801|gb|DW508771.1|DW508771 GH_TMIRS_127_G07_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc

AGAATCCTGATGATGCTGCAG
|.||||||.||. |.|||||.
TTTTAGGATTATAATGACGTT

EST sequence (targeted fragment marked with yellow):
ATTCATTCCGTCCTTTTTCTCCTTGTGTTTTCTCTCAACTCAAACTTTTTCAAATTTTAATTTTTATTCCTTTTCCGAAATCAAAGTAATTTTCAAGCAGATTCAGAACATTCCCATCTCAAGAAGTTTGTTCATGATTTGCTGAAAATGACATCTGTTGAGGGAAATACGGCTGAGCCTCGGAAAACTAGTAATCCGGCTGCTGACACTGCTAAGATTCAGAGTTCATCATTGTCATTCCGAAGGTGGGGTAGGAAGTATCCTTTTATCAGATATGGGCTTCCAATGATTTCGTTGACAGTGTTTGGGGCAGTTGGCCTTGGTCATCTCTTGCAGGGCAGCAAGGATATAGCAAAGGTGAAAGATGATCAAGAATGGGAAATTATCGAGACGAGGAAAGCATTATCAAGAACAGGACCCATTGATGCGTATAAGCCAAAAAAGATTTCATTAGAGGAAGAATTAAAGGCTTTGCAACAGAAGGTTGATATAGACAACTATGACTACAAAAGAATTCCGAAGCCAAATGAAGGCAACTCAGGCTAGTACATTTTGTGCTCTCAATCCCAAAGGTTTCTTTCATACTTGCAGTAATATTAGGATTTTAGATTGTGGTCGCTGCATCTTGATAAATACCCTGGTTTAATCCAAATCCG



gi|109882211|gb|DW511181.1|DW511181 GH_TMIRS_150_G10_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc

AGAATCCTGATGATGCTGCAG
|.||||||.||. |.|||||.
TTTTAGGATTATAATGACGTT

EST sequence (targeted fragment marked with yellow):
ATTCCGTCCTTTTTCTCCTTGTGTTTTCTCTCAACTCAAACTTTTTCAAATTTTAATTTTTATTCCTTTTCCGAAATCAAAGTAATTTTCAAGCAGATTCAGAACATTCCCATCTCAAGAAGTTTGTTCATGATTTGCTGAAAATGACATCTGTTGAGGGAAATACGGCTGAGCCTCGGAAAACTAGTAATCCGGCTGCTAACACTGCTAAGATTCAGAGTTCATCACTGTCATTCCGAAGGTGGGGTAGGAAGTATCCTTTTATCAGATATGGGCTTCCAATGATTTCGTTGACAGTGTTTGGGGCAGTTGGCCTTGGTCATCTCTTGCAGGGCAGCAAGGATATAGCAAAGGTGAAAGATGATCAAGAATGGGAAATTATCGAGACGAGGAAAGCATTATCAAGAACAGGACCCATTGATGCGTATAAGCCAAAAAAGATTTCATTAGAGGAAGAATTAAAGGCTTTGCAACAGAAGGTTGATATAGACAACTATGACTACAAAAGAATTCCGAAGCCAAATGAAGGCAACTCAGGCTAGTATATTTTGTGCTCTCAATCCCAAAGGTTTCTTTCATACTTGCAGTAATATTAGGATTTTAGTGCATTGTGGTCGCTGCATCTTGATAAATACCCTGGTTTAATCCAAATCCGCTTAGAATATGTTGCTCATGTTGTTATAGATTGTTGTGAAAACTTAAAACACAATTTTGGTAGTTGAGATTAATCATCATATATTTACCACCTTG



gi|109878973|gb|DW507943.1|DW507943 GH_TMIRS_119_C05_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc

AGAATCCTGATGATGCTGCAG
||||||||||||||||||||
CCTTAGGACTACTACGACGTC

EST sequence (targeted fragment marked with yellow):
AACGCATCTAGAGTTAGATGGTGATAGGCAAATTGCTATGGGCGATCAGCATGGTCTGCCACCTGAAGCTGATTGGCAATATAGGGGATTTAGGTCTAAGGTAAATCTGCAGCAGGAGCCTTGTAGAAGCGATGGTGCTACTCATGGAAGATCGGATGGATATAGTGAGGCAGAAACAATGCAGCTGTTGAGCCAAACTCTTATCCAATCTCCAGCATCGATTAGGTCTAATGAAATGCAAAGATATGGACAGTTCAGGAGACCTGGAAATAACAATGTGTTTCACATTCCTCCATCATCTTATCAGATTCATTTTCCAAGCAGCAGCAATGGAGGCCGAATAGGAAGCGATCTTTTACTATCCATTAGTGAACAACAATGGCAATCAGGTCCTCACCAAATGTTTGGAAATTCTGCAGCATCATCAGGATTCCCATCGCAGATTAGACCTTCTTCTCAAACTTGGCTGCAGAAAAATGGGTTCCACTCACTCATGAGACCCTCCTAACTCAAAAAGTAGCCATAAAAATGTCTCCGCTAATTAAAATATATATTTCTGTTTTCTCCTTGTTGGCTTTGTAAGTATGTCATTTTTAAAATCCCCCCTTCTTTTCCCTCTACAACTTTCTCGGAAAATCACAAGGAAAATCATTGGAAGAAGAGGGAAACTTCTGACTCTCTTGGAGTTGTTGGGCATCGGTCAAACTAACAAACCGACGAAAAACGTTGAACTATATAAATTCCGGGTTCTGACAGAACAGAAACTGCTAATCTTTTTCTATCGTCTTTAATGCAAGTTATATGCCGCCCGATACGGTTGGCTTCATTGTTGG



gi|109876576|gb|DW505550.1|DW505550 GH_TMIRS_095_A08_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc

AGAATCCTGATGATGCTGCAG
|.||||||.||. |.|||||.
TTTTAGGATTATAATGACGTT

EST sequence (targeted fragment marked with yellow):
CCTTCCTTTTCCTCCTTGTGTTTTCTCAACTCAAACTTTTCAAATTTTAATTTTAGTTTTCAAGCAGATTCAGAACATTACCCGTCTCAAGAAGTTTGTTTCATGATTTGCTGAAAATGACATCTGTTGAGGGAAATACGGCTGAGCCTCGGAAAACTAGTAATCCAGCTGCTAACACTGCTAAGATTCAGAGTTCATCATCATCATTCCGAAGGTGGGGTAGGAAGTATCCTTTTATCAGATATGGGCTTCCAATGATTTCGTTGACTGTGTTTGGGGCAGTCGGCCTTGGTCGCCTCTTGCAGGGCAGCAAGGATATAGCAAAGGTGAAAGATGATCAAGAATGGGAAATTATCGAGACGAGGAAAGCATTATCAGGAACAGGACCCATTGATGCATATAAACCAAAAAAAGATTTCATTAGAGGAAGAATTAAAGGCTTTGCAACAGAAGGTTGATATAAACAACTATGATTACAAAAGAATTCCGAAGCCAAATGAAGGCAACTCAGGCTAGTATATTTTGTGCTCTCAATCCAAAAGGTTTCTTTCATACTTGCAGTAATATTAGGATTTTGGTGCTTTTTTTTGTGGTCGTTGCATCTTTATAAATACCCACTTTTAATCCA



gi|109887820|gb|DW516789.1|DW516789 GH_TMIRS_205_A12_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc

AGAATCCTGATGATGCTGCAG
|.|||||||||.|| | |||.
TTTTAGGACTATTAGGTCGTT

EST sequence (targeted fragment marked with yellow):
TGAACAAAGAAGCTAAGACCGAAGAAAGTTCATCCCATGCTCATCATTCTGCAGGTAACCATACCACAGAAAATGATGGCATAGCCAATCCATCAGAGGATAATTCAAGTTCACCAACTGAGAATTGCTCTACTACTGATGACCCCAATTTGTTAGACGCTATTTGCAACGATGAATCTTTATTGAATAGCTTAGGGATGGACGAACCTCCCCTAGTGGATGTTTCATGGACCAGTATATCAGCAGGAGAATCCAACTGCAACCTCACAAGCTTACCGTCTTGGGAGGAGGACTGCGCATGGTTGCTGGATTATCAGGATTTTGGTACTAACGACTTTGGGTTCGATTACCTAGACGACATTGAATTGAACACGTTAGAGATGGGCGACAAATCAGTAGCCTGATGCACCGTAGTTGAAGGTTTGAGTAAAAAATATCAAGACTATTTACTCAAAGCTTCAAGTTAGGTGCATTTGTTAACAAAAATATTAGTTGATTTT



gi|109826614|gb|DW225324.1|DW225324 GH_HYPT_01-01-07R_B02_InvR_21Apr04_014_F Stem - 3 weeks after planting Gossypium hirsutum cD

AGAATCCTGATGATGCTGCAG
||||||||||||||||||||
TCTTAGGACTACTACGACGTA

EST sequence (targeted fragment marked with yellow):
TGCAACATTTAGTGTTCCATCTTTCCAAGGGTTAGCGGGGACTTCAGATCAGCCTATTTTCTGGAATAGTGCATATCCGAGATTCTTCCCTAGTGAGGTACATCTCATTGCTTAGCTTCTAAATCATTAAACATTGTTCAATCCTTTCATCACCGCACACATCCTCACTGCGATAATTTCCTATTACTTGGTAGATCAACCCATGTTGTTGTTACAGTTGAGTTGATTCTGCCATAACTTTGCTGCTAAAGTGAACTTATTTTTATGTGCAATGAACGGTGTTGAATATTCTTTATTAGGACTTGAAAGTTTGAAGGGTTTTAGTCGTAGATTGGAATATTTATTAATGGAAAATATGCTCATATAATATGTCATTAGCTATACTTTCAGGATCCATATATATATACACACACACATCAAAATCTCAATAATATCATTTTTTTTTATGAGCAAGATTTTAACATGCCAGATGTCACCTACTAAAAGAAGCAAAAAAAGGACAAGATGATAACGCAATTTTGATTTGTTTTTTCCAGGAAAGAACTATGGTGAAACCGGTTGAATTCGATCCTCCACAACGTGTCCCTGATTGGCCGTGGCAAATGCACGGTCAGGTCAGTACTACGCTAATGCCACTGTTCTCTCATGCAGCATCATCAGGATTCTCAT



gi|164352093|gb|ES839084.1|ES839084 UFL_050_37 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

AGAATCCTGATGATGCTGCAG
||||| |||||||||| ||.
ACTTAGAACTACTACGAGGTT

EST sequence (targeted fragment marked with yellow):
CTTCAATGTTACCATTCTTTTCTTTACTTTAGCTTTGGGTTTTTGTTTTTATAAGCTTTGCTTCATGTTCTTCACTTCTTTTTTGAAGCATTCATTTTGGGTTTCAACTTTTTTGGGCTAGGGTTAGGGTTTTTTTTGCATGGGAATGCTATGATGATGGTGGTGAGGATGATTGCACAACAGTCACTGTTTGCTGTTGGAGCATCATCAAGATTCACAATTTTAGGGTTCTTTTTTGATTGATTTGATCAATCAGCCTTTTTATGATTGAGAATCCTGATGATGCTGCAGTGGCAATAAGTGGCTAAATATTCCAATTTACAAGCAAATGCTACCACCAAAAAATTACAAAAAAAAAAAGAGGGAAAATAATGAAGGTGAATTAATCCTCTCTTTTGCTTGTATCTTTTTTGTTTTTGAAGAATACATTTAATGCTAATAACCTTACAAAAATGTTTAATATTTGATAATATTATTAGGGTTTTGCTATATAATCCAAGCTGTAATATACTGTAATAATCATATATCTATCTTAGTTTTTTTTTTTAATTTCAGTTTATATTATGTTATTCTGACCCTTTTTGTCAGATGTTTTCAGCTGCAAAAAAAACTCATTAATTTCCATTTTGTGTTTATATAATTTATATGTTTTTTTTCAATTTCTACTGATGATGCTCTGCAGGGAATATATAGCAAATCTCTTATGTAATCATTTTGGTTTTCTGTCAGCAATCTATAATCATTTTGTTAACAATGTTGTACATTAATTTTTTTCCCTTTTTCTTTGTTTATTGATGTAATTTTTTAGCCTTTTTTATGGGAATATTTTCAGTTAATTCTTTTTCAATGTATTTTATATGTAATTTTTTCACATTTCTACATGAAGGTTTTCATCTTTTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAA



gi|164294534|gb|EX167780.1|EX167780 D09_R11_075 Cotton 1-14 day post anthesis Lambda Zap Express Library Gossypium hirsutum cDNA

AGAATCCTGATGATGCTGCAG
||||||||||||||||||||
CCTTAGGACTACTACGACGTC

EST sequence (targeted fragment marked with yellow):
CCCTTNTGCTGAGNCNCTTTACNNCCCCTTNAACGGNNTCCTTTANNGGCCCTTAGTGGGGGTTAATTAAACCCCCCCTTNNGGGGGGGCTTAAACACCCCCCTCACTGNGGGGCTTTCTCAGCCCCGTGTNAGGNAANGCAAAGATATGGNCAGNTGAGGAGACCTGGAGGCAACAGTAACATGTTTCACATTGNTCCTCAACACATTAATCCATCACCTTATCAGATTCATATTCCAAGAAGCAGCNNTGGAGGGCGAATTGGGAGTGATCTTTCATTATCAACTAGTGATCAACAGNGGCAATCAGGTCCTCACCACCAGTTGTTTGGAAATTCTGCAGCATCATCAGGATTCCCATCGCAGAGCNGACCTTCCCAAACATGGCNTCACCAAAATGGCTNCCATTCACTCATCTAATTCTTCACTGANNAAAANNCTNTACCCGCCTNNCNCATATATCANC



gi|109872803|gb|DW501778.1|DW501778 GH_TMIRS_060_A01_R Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc

AGAATCCTGATGATGCTGCAG
||||||||||||||| || ||
TCTTAGGACTACTACTACCTC

EST sequence (targeted fragment marked with yellow):
GAGTTAATCCAGCCATTGAAATTAATTAAGTTCTAAAATTTTGACGTGACAGGGAAACCCTAAACCCTTGAAAATCAGACTAACAGGAAGAAAGAAACAAAACCTTGAATAATAATAACAACAACGGCAGCAGCAGCAATAACTAATGAACAGTAGTAATCATTACCAAACCACGTGGAAACAAAATTATAATGTACATATGAAGTTTGCTTTACAGCTTCAGCCCTCCTCACCAACCAAATCTTCGATTCTGGGTCCGAGACTCAAGTCCAACTTTCAGGTTCAGCTGAAAACATCTTTCATCCAAGCATTATTCTGAAACAGAAACCTCTTGATCAACCCTCCAATAGTTTGAATCATTAAACTCCTGCATTCCAGCTCCATCATCATCAGGATTCTCCTTTTCCGGTACCTTTGGAACACTGCTCCTCTTCAACGGCCCTGCTTCCCCAACTATCCCTTCTTTTAATGCTTGTTCCATTGCCTTCTCTGTACCTTCTAATTCCACACCTACAAATTCAACATCCTCTTCAAACAAAGAGCGCACCGATGGTGGAGATTTCTGATTTGTATCACTGCCCTCTGATCCTTCACTTAAATCCATGGAATCTGAGGAACCACTTGGAAGTACAGATTCCCCATTTAAGGGGGGGGCAACATCGGTTACCATTGTCTCAGTTTGGCTGGGTAGGTTGACATCTGAGCTGTCATCATCAAGAAACGGATTCTTGCTTGGACCACCTACTTGCAAGTCTGAATATTCTCCCCATCTCACCCACTCAAGTAAAGACCTGTCTCCAAATACTCGTTTTCTGTT



gi|109867369|gb|DW496345.1|DW496345 GH_TMIRS_005_B07_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc

AGAATCCTGATGATGCTGCAG
||||.|||||||||| | ||
TCTTGGGACTACTACTCCCTC

EST sequence (targeted fragment marked with yellow):
GCATGTGAGGGTTCCTTCAAGTCCTTTTGCCTCCTGAATGCATTGAGTGATCTCATGATGCTTCCATCTGAGATGCTTGCGGATAGGTCCACAAGAAAAGAGGTAAGCCCCAAGTTCAGCGTCTCCCTCATCATCAGGGTTCTTAACGATTTTGTACCTGATGAGTTCAACCCTAATCCAGTTTCACAGGCAGTTTTTGAAGCATTGGAAAAGGATCTTTCTGAGGGTGGGGAAGAGTCTATCACAAACTTTCCATGTATGGCTACTCCTATTGTCTATTCGCCACCTTCCGCAACTTCCCTAACCAACATTATAGGAAGCCAAGTCATGGAAAGGAGTAAGTCATTGGTACTTAGAAAATCATACACTAGTGATGATGAGCTTGATGAATTGGATTCACCCATGACCTCGATCATGATTGAGAACCCCCGCAGTTCTCCCAAAACCAATTGGATGAGAACGGGAAAGGGGGGCCGGAAAGTTGTTAGATATGAGCTAATCCGAGAGATATGGAAGGATGGTGAGTAGCAATGTTTATTTTTCATCCAACCCTGTCTTTTTTTGTATATAAGCACGTGAGCATAGGCTGGTTTTGTTAAGTTGTTTTGTTGGAGTTTTGCAAGAATTGGTATTTTCCTTAATATCATCGTACATATGTTACTACGAATCCCTATTGCCTACTGCATCGGTTGCTATGATATATAAGGAAGAGGATTTCAAAGATTTCT



gi|164281009|gb|ES828516.1|ES828516 UFL_331_92 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

AGAATCCTGATGATGCTGCAG
||||||||||||||||||||
CCTTAGGACTACTACGACGTC

EST sequence (targeted fragment marked with yellow):
GGCACGAGATTGTTTCTCTCCCTTCATTTCCATTTCTCAGCTCCCAATTGTCTTCACTGCCATCTCTTTGTTTTTACAGGTACGTTTATTTAGGCTTGTTTGACACAGAGATTGAAGCTGCGAGGGCTTATGACAGAGCAGCAATTAAGTGCAATGGTAAAGATGCTGTCACTAACTTTGATCCCAGGATATACGACAATGAGCTTAACTGTGGAGAAACTTCGGGTAATGCTGGAGATCACAACCTTGATTTGAGCTTAGGGAATTCAACCTCGAAGCAAACGAATCTGGAGTTAGGTGGTGATAGGCAAATTGCTATGAGCGATCAGCACAGTCTGCCACCTGAAGCTGATTGGCAATATAGGGAATTTAGGTCTAAGGTAAATCTGCAGCAGGAGCCTTGTAGAAGCAATGGTGCTACTCATGGAAGATCGGATGGATATAGTGAGGCAGAAACAATGCAGTTGTTGAGCCAAACTCATATCCAATCTCCAGCATCAATTAAGTCTAATGAAATGCAAAGATATGGACAGTTCAGGAGACCTGGAGATAACAATGTGTTTCACATTCCTCCATCATCTTATCAGATTCATTTTCCAAGCAGCAGCAGTGGAGGCCGAATAGGGAGCGATCTTTTGCTATCCATTAGTGAACAACAATGGCAGTCAAGTCCTCACCAAATGTTTGGAAATTCTGCAGCATCATCAGGATTCCCATCGCAGATTAGACCTTCTTCTCAAACTTGGCTGCAGAAAAATGGGTTCCACTCACTCATGAGACCCTCCTACCCCAAAAAGTAGCCAGAAAAATGTCTCCGCTAATTAAATATATATTTTCTTTTTCTCTTTGTTTGCTTTGTATGTATGTAAAAATCAATGCTTCCAGATGCTCATATTTAAAATCCCCCCCTTTTCCTCTACAACTTTCTCGGAAAATCCATTGGAAAAAAAAGGGAACTTCCGAACTCTCTTGGGAATTGGTGGGGCATCGGGGTCAACCAAACAAAACCGACGAAAAACGTTTGAACTTTATAAAATTCCGGGTTCCTGACTGAAACTGCTAAATCTTTTTCCGGGCGCTCTTTAATTTCAAGTTATTGGGCCGCTCTAAACGGGTTGGGCTTCCTTGGTTGGACCCCCCCTTCCCCTTTGCTATTAAAAAAATTAAAAGAAAAAATTTTAAATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGAAAAAAACTTTCTTTAAAGGGGCGCGCGCGCCGGGCCCCC



gi|109825296|gb|DW224029.1|DW224029 GH_HYPS_01-01-03R_H05_InvR_13Apr04_033_F Stem - 7 weeks after planting Gossypium hirsutum cD

AGAATCCTGATGATGCTGCAG
||||||||||||||||||| .
TCTTAGGACTACTACGACGAT

EST sequence (targeted fragment marked with yellow):
GGGCCAAGTACTTATGAAGGAGGAGGCAATGGTCATTACAATCTTGATTTGAGCCTTGGGATTTCAGCGACTCGAAACGGGAGCAACGTTACAGGGGATTTCATTTTTCGTAACACTACTGGCACCGGAGAGAGTTCTGGTTCTGTATCTGTGGGTGTACAACCTGATCATTGTCAAACAATTGCATCTTGGCACCCTCCTATGTTGTCTAATGTTTATCCTGCTGTTCTTTACCATACAATGAGGGAAGGGCAATACAGAAGAGACCTGAAGCTGTTTCATCAAACTGGGCATGGCAAATGCAAGGGACTGGTAAAATTATTACACCAACCCCCGTGTTTCCTATAGCAGCATCATCAGGATTCTCTTCATCCGTTGCCATTGCTTCCTCCTCATCATCACTGAGTCCAGCTTTCAACAATTCTGGCCGAAACCCTTGTTTCCCGGCACCGGCTACGTCTACCAATAACACTTCCCATTACTATAATTACAGAAGCTGAAATCAACATAGAAGTTTAGGAGCTGATGCAATTGTACAATCATTTTGGCTCTCAAATAGCGGACGCAACGCGACGTTACGGTTTTACTATAGTTGTAGTTTCGGCTTTCGTTTTCATTGCGGGAATTCGAATAGCTCGACAGGGTTAGCCAAATCGCGTCCGAATTCGTCGAGGGCTCGGATAAGTTTGATTAGTTGTCGATTAACCATACAGGTGACATAGCTTCAACAGCAATCAAAGGTCAAGTGGCTGATAAAGTTGGAACAGGGCATGGGGCCTTGATGATTGANGTAGCAGTGTCCAAGCTTTGATGCCCCTATTTACTGAAAC



gi|164355388|gb|ES839694.1|ES839694 UFL_057_10 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

AGAATCCTGATGATGCTGCAG
||||||||||||||||||||
CCTTAGGACTACTACGACGTC

EST sequence (targeted fragment marked with yellow):
GGCACGAGCTGCAATTAAGTGCAATGGCAAAGATGCTGTCACTAACTTTGATCCCAGCATATACGACAATGAGCTTATTAATTCTGGTAAAAATGCTGGAGATCACAACCTTGACTTGAGCTTGGGGAATTCAAACCCAAACCAAAACAGTGCTAAACCTAATGCTGATAGGCAAAGTGGTACGAGTTATCAGCAGCATAGTCTCCCACTTGAAGCAACTGATTGGCAATGTCGGGGATTTAGGTCTATGGAATCTCGTAGAACTGATGAAGCTGGCCATGGATATAGTGAGGAAGAAACAATGCAGTTGTTGAGCCAAACTCACATTCACTCTCCAGCTGTCTCAGTTAAGTGTAATGAAATGCAAAGATATGGACAGTTGAGGAGACCTGGAGGCAACAGTAACATGTTTCACATTGTTCCTCAACACATTAATCCATCACCTTATCAGATTCATATTCCAAGAAGCAGCAATGGAGGGCGAATTGGGAGTGATCTTTCATTATCAACTAGTGATCAACAGTGGCAATCAGGTCCTCACCACCAGTTGTTTGGAAATTCTGCAGCATCATCAGGATTCCCATCGCAGAGCAGACCTTCCCAAACATGGCTTCACCAAAATGGCTTCCATTCACTCATCTAATTCTTCACTGATTAAAATTCTTTACATGCCTTTCTCATATATCATCTTTTTTTTTTATTAATATTATCTAAATGTATAGAAAAACAATTTCCAACTTGTTTGAATATATATTTTTATATATATGATGTTTGTTCCTAAAAAAAAAAAAAAAAAAA



gi|109848847|gb|DW477826.1|DW477826 GH_RMIRS_010_G07_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq

AGAATCCTGATGATGCTGCAG
||||||||||||||| || ||
TCTTAGGACTACTACTACCTC

EST sequence (targeted fragment marked with yellow):
ATCAGGCAGAGGACGAGACAAGACCCTAAACCCTTGAAAATCAGACTAACAGGAAGAAAGAAACAAAACCTTGAATAATAATAACAATGACGGCAGCAGCAGCAATAACTAATGAACAGTACTAATCATTACCATACCACGTGGAAACAAAATTATAATGTACATATGAAGTATGCTTTACAGCTTCAGCCCTCCTCACCAACCAAATCTTCGATTCTGGGTCCGAGATTCAAGTCCAACTTTCAGGTTCAGCTGAAAACATCTTTCATCCAAGCATTATTCTGAAACAGAAACCTCTTGATCAACCCTCCAATAGTTTGAATCATTAAACTCCTTCATTCCAGCTCCATCATCATCAGGATTCTCCTTTTCCGGTACCTTTGGAACACTGCTCCTCTTCAACGGCCCTGCTTCCCCAACTATCCCTTCTTTTAATGCTTGTTCCATTGCCTTCTCTGTACCTTCTAATTCCACACCTACAAATTCAACATCCCCTTCAAACAAAGAGGGCACCGATGGTGGAGATTTCTGATTTGTATCACTGCCCTCTGATCCTTCACTTAAATCCATGGAATCTGAGGAACCACTTGGAAGTACAGATTCCCCATTTAAGGGGGCGCCAACATCAGTTACCATTGTCTCAGTTTGGCTGGGTAGGTTGACATCTGAGCTGTCATCATCAAGAAACGGATTCTTGCTTGAACCACCTACTTGCAAGTCTGGATATTCTCCCCATCTCACCCACTCAGGTAAAGACCTGTCTCCAAACAACTCGTTTTCTGTTGTCTCAAACCTAAAGAATCCCATATCTTGAGTAGCATTGGCTTTCTCCCCTTGTGGACTCAAGTCTCCATCGCTCATAAAATTGTTAAATTCATTCATCACATCTGAAGTAGATGTGCTATTCACTGACTGGCTGTTTTCATTTCACTCATCT