| mature miRNA: AGAATCCTGATGATGCTGCAG species: Saccharum officinarum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|268774946|gb|CN609524.1|CN609524 SUL01-043F-A11-081.b Sugarcane leaf whorl library Saccharum hybrid cultivar CoS 767 cDNA clo AGAATCCTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): CAAGCTGTGCAACTCAAGAAGCATGGAAATCCAAGTGCCTGCTACTGATGACAAGAATCCAGAGCAGCGCCGTGTACCTGTGTCAATTGATGTCCCAGACCCTGACTTCCATGATTTTGATAAAGATCGAACGGAGAAGGCTTTTGATAGTGATCAAGTATGGGCTACATATGACAGCGAGGATGGCATGCCTCGCCTATATGTAATGGTTCAGAAAGTTCTTTCAATGAGGCCTTTCCGGATCCGCATGAGTTTTCTCAACTCAAAGTCAAATATTGAACTGGCACCTATAAACTGGGTTGCCTCTGGTTTCCAGAAGACATGTGGTGATTTCAGGGTCGGGAGATATCAGGTCAGCGAAACAGTCAACATATTTTCACACAAAGTGAGCTGGACTAAAGGTCCCCGTGGCATCATCAGGATTGTT | |||||||||
gi|36047415|gb|CA291208.1|CA291208 SCUTSD2028C04.g SD2 Saccharum hybrid cultivar (mixed) cDNA clone SCUTSD2028C04 5', mRNA seque AGAATCCTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): ATTGAGAAAGATGCGGGTGATGGGGACATCCTTGATCTGAATTTGAGGATTTCACAACCTAATGTGCATGAGCTCAAAAGTGATGGTACCCTGACTGTTTTTGGATTAGGTTCGAATTCTTCTAAAGCTTCAAGCTCCATTGTTTCTCAGCCAATAAGCCCTCAGTGGCCTGTGCATCCTCACAGCACACTGATGCAACCCCAGCATCAACATCTGTATGCATCTCCTTGTCCAGGCTTCTTTGTGAACCTCAGGGAGGCGCCTATGGAGGAGAAACGGGCAGAGCCGGCGGGTCCCCATCCCCAACCGGCGTTCCCGGCTTGGACATGGCAAATGCAGGGCTCCCCTGCCCCGTTTCTCCCTGCTACTGCAGCATCATCAGGATTCTCTACCGCCACCGGCGTGGACGCGGCCACAGCCGCCGGCAGCGTGCCGTCCGGTGGCCCCCGGCAAGTGTTCTTCGGCTACCAGCAGCTCCGCTTCCCCCCAACCGCCTGACAGACTCCCCCAGTCCTCCTGTTGAGCTGGAGAGTGGAGACGGCGTCTGAGCTGAACGGTGAAATGGTGGCGGGCTGGCCATGCGCCGCCACCGGTGGGTGTGGTTCGGTACAGACGCTTCTTGGTTGGGGGTAATAATGGTTGGTGAGAAACCGGAGATGCAACGCTTCTGTATGGGCTCACTCCCG | |||||||||
gi|36024659|gb|CA285133.1|CA285133 SCEPSD1073B05.g SD1 Saccharum hybrid cultivar (mixed) cDNA clone SCEPSD1073B05 5', mRNA seque AGAATCCTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): ATCAGGTCAGCGAAACAGTCAACATATTTTCACACAAAGTGAGCTGGACTAAAGGTCCCCGTGGCATCATCAGGATTGTTCCCCAGAAAGGGGATACATGGGCCTTGTACCATAACTGGTCTCCTGATTGGAATGAGCTTACGCCTGATGACGTGATATACAAGTATGAGATAGTAGAAGTTATTGATGATTTCACCGAAGAGCAAGGGCTGACTGTCATCCCATTGCTGAAGGTTGCTGGATTCAAAGCTGTCTTCCACAGACACATGGATCCCAAGGAGGTCAGGAGGATACCGAAGGAAGAGCTGTTCCGGTTCTCGCATCGAGTTCCTTCTCGTCTTCTGACCGGTGAAGAAGGCAACAATGCGCCAAAAGGTTGCCATGAGCTGGACCCTGCTGCAACTCCAGTGGACCTTCTTAAGGTTATCACAGAGCTCAAGGAAGACACGATGGCGCAGACTGCTAAATAGGAGGGGAGCAACTCTGAACACTGAAGATAGGTAGCTGGATGTCTGAATGATCAGGTCCCACTTGGTTAACGACAACCGTGCCAGCACATGATGGTATCTAAAGCTCTACTACATCATCTTATTTTTN | |||||||||