| mature miRNA: AGAATCCTGATGATGCTGCAG species: Theobroma cacao database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|215530489|gb|CU580255.1|CU580255 CU580255 MONILIOU_KZ0ABV Theobroma cacao cDNA clone KZ0ABV3YB20FM1, mRNA sequence AGAATCCTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): CGGGGGATGGGATGGCCTGCCAGTTGAGACAGGAGCAAGGATTGACAACTCTGCTCCGGCAACGATGAGGGTTCAACCTAGTCTTGGCCAGGCGATGGCATTCAAGCACCTTCAAAACTGGAATGGTGCAAATCCCAGTTTCTTTCCTGTTTATAGGGAAAGAGCAATAGAGAAGAGGATGGAAGTAGATTATGCACCAAACTGGGCATGGCAAATCCAAGGCCTTTACGGTGGGGCAAATCCAGTGCCACTCTTCCCTACTGCAGCATCATCAGGATTCTCGTCTTCAACAATTACTTCCCCATCAGCTGCTGCTGGCCAACTTTGCATTCCTAACACAACATTCCTCCACCGCCACCATTTCCCTCCGGCCATCACAAACCCGAACATCTCTCATTTCTACTGCCAGAGCTGAATAAGTTAGAATATGGCCACCATCTCGTATCTTCTCTACCGAGTAGAGAGTCTGGGTAGGCAATCAATGAAAATATTAGAAGGGGTTACAGGCTTACTGAAATTGATATAATGGAAGGCGGTACATAAAAGGGGAAATCAATTGATCGAGTTCATCATCGCATGTAAAAGCCTCATCAAACTAGTGTATTTGGTTTGATGATCATGATCAAAATTTGGGTCAATTTGAGCCCTTGGTTGAATGGAATGACTGTTATAGTTCCAAACCTTTGTTTCCATCATCTATTTTGTGGCCAGCAAGATATTTT | |||||||||
gi|211995727|gb|CU567900.1|CU567900 CU567900 MIRIDUFS_KZ0ACAD Theobroma cacao cDNA clone KZ0ACAD1YD07FM1, mRNA sequence AGAATCCTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTGCTTTCACTGATACCTGACTAAAAGGTGTTCCCTGGGATTCTGGAACAGTCATATGGCTCCTGGGAGAGGCTTCTGGGGATGACCTGTATGCTTGATTACCTGTCTCAAAATTCCGTTCTCTCTGCAGATCAAATGTACTCTTCAGTGGCTCCTGTTCTATTTGAGGGGAGTCTACAACAATTAAATTCTCAAAATCACCTTTAGCATCATCAGGTTTCTCTGGCTGATCAGCAACAAATAGAGAAAAATCAGGCACTGGGATGGCAATTGAAGCAGTGGTATCAACGCAAAGTACGCGGGGGCTCCTCGAGGGTTAAATCCCAAACCCCAATCTTCACGTATAAAATTTTTTCAAAGAAAATAAATTTTAGGTTTTTCCTATCTTAAATTCCTGGCTACATTGGTTGGCGGGGCGCGTGCGGGCTTCTGAAGTGGCGCGTGGAATCCCCCCTTTATCTCGTTCATGGTTTTAATTTTTCAATCCCAATCGGGAAACCCTTTCCGGAATCCT | |||||||||
gi|38499942|gb|CF974182.1|CF974182 PSU_meup2.1G07 Defense-related ESTs from Cacao Leaves Theobroma cacao cDNA, mRNA sequence AGAATCCTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): TTTTCCAGGGGAAGCTCAAAATATCGAGGGGTGACGCTGCACAAATGTGGCCGATGGGAAGCACGGATGGGGCAATTCCTAGGCAAAAAGGCTTATGACAAGGCAGCTATCAAATGTAATGGGAGGGAGGCGGTCACCAACTTTGAGCCGAGGTCATATGAAGGGGAGATGACCTTTGATACCAGTAATGAAGATGCTCTTTATCCAGGCAATGATCACAACCTGGATCTGAACCTGGGGATATCTCCACCTGTTGGCAATGGTCCCAAGGAAAATGAGGGGCATCTCCATTTCCATACTGGTCCTTATGACGTGCATGGTGCAAAGAGTTTGAGGGCAGAGAACCCTGCTGCTGCAACAGTGGGTGGTCCACCTTTCAAAGGACCAGTAGGGCCGTCAGATCAGCCTATTTTTTGGAATAGTGGATATCCTAGATTCTTTCCTAGCGAGGAAAGAGCAATGGTGAATCGAGTTGAATTAGGTCCTCCGCAAGGTCTCCCCGATTGGGCATGGCAAACGCATGGTCAGGTCAGTGTTACACCAATGCCACTGNTCTCTACTGCAGCATCATCAGGATTCTCGNTCTCGGCTACCCCTCGCTCTGCTGNCATTCTCCCCGTCGAAACCTCTCGACCCAACNACCCCACAGTCTATGTTTTG | |||||||||
gi|211994218|gb|CU593076.1|CU593076 CU593076 SEED34I_KZ0AAH Theobroma cacao cDNA clone KZ0AAH1YI16, mRNA sequence AGAATCCTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTGGTTGTTGATGTTATGATTTCGAAGTGTGCAAAGTGGCACACTGTACTTTGAAACTGAGAGAAAGAAAGGGTCTTTTGTATAGTCGTTTATTGCCGATGCAGCATCATCAAGATTCTCACTTTCCAAACAACTTTGGCATAAAGGAGAAGGGAAAAGAAAGGGGAAGGGGAGAAAAAAAGAAGAGAGTTTGTATTATCCATCACCACCACCGTGCATTTGCATGTGAATCTTGATGATGCTACACCCGCAAACAACGACTGTCAATCTATCTATCCAATATCCATGCACAACATAAAGAGAGAGAAAGCCTTGCTGGAACTCAATATGGGATTTAGTATATAAAAGGAGAGGAGAGAAAGGCAAACATTTGAGTTTGACCCAAAGGGCCAAAGATCATGGGAAAAATTTTTGGAAGAAAAACAAAATAAAAATCCCG | |||||||||
gi|212165380|gb|CU600935.1|CU600935 CU600935 SEEDMAI_KZ0AAG Theobroma cacao cDNA clone KZ0AAG2YJ02FM1, mRNA sequence AGAATCCTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): CGGGGACGCTTTTTCTTCCTTGCTCTCTTTCTCTCTTTTCTTTCTTTGAATGGTTTTGTTGCAGACATGGCCGTGGAGCTCATGATGAGTTACAGGAACAGCAACAGCTTCACAACCAAAATGGAAGAAAACGCAGTCCAAGAAGCAGCTTCCGGGCTGGAAAGTGTTGAGAAACTCATCAGGTTGCTTTCCCAAACCCAGCAGCAACAGCAACAAAACATTACTAATCAGGAAAAATATCAATCTTCTTCGAGCTCAACAAGATCCTCCCTGGATTTCGATATGGACTGCAAAGCTGCAGCTGACGTTGCTGTTTCAAAGTTCAAGAAAGTTATCTCTCTTTTGGGTCGAACCAGAACTGGACATGCTCGCTTTCGGAGAGCCCCTGTAGCGCCCCCAGCTGCTACAAATACTACAACTATTTCACCTCCTGTTAGCCAAAACCAAGCAAATCAAGAGCTTGAAACTAAGGTTTATTATGCAACGCCGATCCAGCAGATTCCACCACCGGTTACTTATCATCCTCATCATCATCAGGATTTTTTAACGGTGAAAAGTGGGGTTTTAGAGAGGAAAGATTCATCAACAACCATCAATTTTTCATATTCTTCCGCTGGGAATTCGTTTATGTCATCTTTGACCGGAGATACTGATATTCCACCTGATGATTACTCGTGGAGGAAGTACGGTCAAAAACCAATCAAGGGATCTCCACATCCAAGAGGTTACTATAAGTGCAGTAGCGTGAGAGGATGTCCAGCTCGCAAACATGTGGAAAGGGCT | |||||||||
gi|212120104|gb|CU511438.1|CU511438 CU511438 PODWB2S_KZ0ACN Theobroma cacao cDNA clone KZ0ACN1YB08FM1, mRNA sequence AGAATCCTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): CGGGAGAGGTGTAACCTTGCATAAATGTGGCCGATGGGAAGCTCGAATGGGACAATTCCTGGGAAAGAAGGCCTATGACATGGCTGCAATGAAATGTAATGGAAGGGAAGCTGTAACCAACTTTGACCCAAGCACTTACGAAGGGGAAATTACAAATAGTCTAGGAGGCAGTTCTCACAATCTTGATCTGAGCCTTGGGATTTCTGCCCCTTCTGTCGCCCAAAATGCAAGCAGCAATGCAGGGGATTTCCATTTTCAGCATGCTGCTAGTGCCAGAGAGAGACCAGTGTTTGAGAGCTCTGCTCCTACATCTACTGGTGTAGAACCTCAACATGGTCCAACAATAGGATCTAAGCACCCTCCCATATTGTCTGGTGTTTATCCTGGCCTATTACCAAACAATGAGGAAAGGGGTATGGAGAAGAGGATCGAAGCTGTTTCCACGACAAGGTTTTCAAACTGGGCAAGGCAAATGCAAGGCAATGGCAACATTACGGCAACCCCAGTGATTCCTATTGCAGCATCATCAGGATTCTCTTCATCCAGTGCCACTGCATTATCAACTGCTTTCCCTTTCAGCAATTCTGTCCAAAACATCTGCCTTCTGACACCGGCCACATCCCCAAATAACAATTCTTATTACTTTAGTTACAGGAGCTGAAATCAAACAAGACCTCAAACCGCCACTGCTCTTCATTATGCTCTTTAGAAAAACTAGGTGAGCAAAAA | |||||||||
gi|211992604|gb|CU567958.1|CU567958 CU567958 MIRIDUFS_KZ0ACAD Theobroma cacao cDNA clone KZ0ACAD1YH12FM1, mRNA sequence AGAATCCTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTAGTTAAAATGAAAATATTATTGAGGCAATAAAGAAACAGTCCTTTTTCTCACCAAAAAGTTACATTTTATGAACTGGAACAGCAGCATCGAAGCAGCAAATATCCAAAATAATCCCCCTCAATAGGAACTCAAAATCAAAGGGCACGACTGACAGTTGTCTAGATGGGAAGATCCCATAATTCTCCTAATGCAGCTCTTGATCTCACAGGAACAAAGTGAAAACAAAATATAAAGAGTAGAGCTTCGTAATTTCCCACCTACTTTGCCTGAGGGTGAGAAGCAATGAACTCAACAGCAAGATTGATTGGGCGGATCTTGTCTGCCTCATTATCAGGAATCTCGAACCCAAATTCTTCCCCG | |||||||||
gi|215525288|gb|CU608799.1|CU608799 CU608799 SEFERMI_B_KZ0AAM Theobroma cacao cDNA clone KZ0AAM6YA12FM1, mRNA sequence AGAATCCTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTAACCAAAAAGTTACATTTTATGAACTGGAACAGCAGCATCGAAGCAGCAAATATCCAAAATAATCCTCCTCAATAGGAACTCAAAATCAAAGGGCACGACTGACAGTTGTCTAGATGGGAAGATCCCATAATTCTCCTAATGCAGCTCTTGATCTCACAGGAACAAAGTGAAAACAAAATATAAAGAGTAGAGCTTCGTAATTTCCCACCTACTTTGCCTGAGGGTGAGAAGCAATGAACTCAACAGCAAGATTGATTGTGCTGATCTTGTCTGCCTCATTATCAGGAATCTCGAACCCAAATTCTTCTTCAAGGGCCATGACAACCTCCACAGTGTCTAAACTATCCAATCCAAGATCATTTTGAAAATGCGCATTTGGGTTAACCTTGGAAGGATCAACTTTCTGGAAGTTTTTAACAACGGAGATGACGCGATCGGTGACTTCAGATTTGTCGAGGAAGGAGCCCTTGACCTCATCGCAGAAACGGCGGCGTATGGCGTTGAATGTAAGAGCAAAGAGCCCGTGACTGGTAGGGTTAGGGTTTCGGGCAAGGGGCGTTGCGTTCACCCTCAAGTGCTTTAGCAAAGCTCCTCTCACTGCCGCCATTTCGATAAGTAGCCCTCTCTCTTGGGTGAAAAT | |||||||||
gi|223631745|gb|ES440361.1|ES440361 EST00579 Theobroma cacao-Moniliophthora perniciosa compatible interaction library Theobroma AGAATCCTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): GTGCAAAGAGTTTGAGGGCAGAGAACCCTGCTGCTGCAACAGTGGGTGGTCCACCTTTCAAAGGACCAGTAGGGCCGTCAGATCAGCCTATTTTTTGGAATAGTGGATATCCTAGATTCTTTCCTAGCGAGGAAAGAGCAATGGTGAATCGAGTTGAATTAGGTCCTCCGCAAGGTCTCCCCGATTGGGCATGGCAAACGCATGGTCAGGTCAGTGTTACACCAATGCCACTGTTCTCTACTGCAGCATCATCAGGATTCTCGTTCTCGGCTACCCCTCGCTCTGCTGCCATTCTCCCG | |||||||||
gi|223632242|gb|ES442408.1|ES442408 TSH_EST00906 Theobroma cacao-Moniliophthora perniciosa incompatible interaction library Theo AGAATCCTGATGATGCTGCAG EST sequence (targeted fragment marked with yellow): AAATGCAGAGATATGGACAGTTCAGGAGACCTGGAGAGAATCATCTGTTTCACATTCTTCCTCCACACATTAATCCATCAACTTATCAGAGTCATTTTCCAAGCAGCAGCAATGGAAGCCGAGTTGGGAGTGATCTATCACTGTCTACTAATGATCAACAGTGGCAATCAGGTCCTCACCAATTGTTTGCAAATGCTGCAGCATCATCAGGATTCCCATCGCAGATTAGACCTTCCCAAACTTGGCTGCAGAAAAATGGGTTCCACTCACTCATGAGACCCTCCTGACCCATCTAAAAGTAGCCATAAAATCTCCGCCACTAATTAAAATCTCACCTTGTTGGTTTTGTAAGCATGTAAAGATCAATGCTTTGAGATTACTCCTTTTTTATCCCCCACGCCCCCTCTACAACTTTCTTAGAGAGCCAAAAGGAAAATTTACAAGAAATTATTG | |||||||||