| mature miRNA: AGAATCTTGATGATGCGGCAA species: Citrus sinensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|219249147|gb|GE213430.1|GE213430 305 'BH' (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sine AGAATCTTGATGATGCGGCAA EST sequence (targeted fragment marked with yellow): ATTTCGAGCGGCCGCCCGGGCAGGTACAAGAGAGATGGGTATAGTGAGGCTGAAACTATGCAACTTCTCAGCCAAACCCATCTTCAGTCACCAGCTTCATCATCGCTCAATAAGTCCAGTGAGATGCAAAGATATGAGCAATTCAGGAGATCTGGTGAATCCCATTTGCTACATATGGTTCCCCCACAATGTAACCAATCAAACTATCAAACTCATCAGTTAACTCCAGGCAGCAGTAAGAGAGGCCGAATTGGGAATGAACTTTCACTGTCAACAAATGATCATCATCAACAATGGCAATCTGGTCCTCATATGTTTGCAACTGCTGCAGCATCATCAGGATTCCCTCAGCAGATTAGATCCTCTCACTCTCAGAATTGGCTGCAGAATAATGGATTCCACTCCCTTGTTAGACCCTCCTAAGAATATGACATAATGATCGTCTAATCTCTCATTTCCTTCAGATTTTTGCTTGTAAGCATGTAAAATCATCAATTGTAGTATTCGATCACATATATTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCTTGTACCTCGGCCGCGACCACGCTAAT | |||||||||
gi|188265260|gb|EY709328.1|EY709328 CS00-C3-701-113-A04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cD AGAATCTTGATGATGCGGCAA EST sequence (targeted fragment marked with yellow): ATTTTTCAATGCGTGATTCCAAAACCCTAATTTCTCAAATCAATCACTCTTACGCAACAACCGCGTCTATTATTTCTCCATTTACCGAAATTTTCTCAATTTCAAAACCGAATCGTCGAATCTCTCACTCTCCATGTTCCTAAACTCTAATTTAATTCAATAAATCTTCCGTCTGAAGAAGTTATAATTTCTCTTGATGGATCATCAAGACTCTCGTGAACGTTCAAATTCATACCATCTAATACCAAATNTNNCATCGATAAACGGCACCTTTCCAGGCGTTGGGCTCGAAATCAAGGCTCCTTTAATGGGCCGGATCTCGCCTTTGGGGGATTTTCAGCGGGGCCCGAAATACTTAACCCCTTGTAAAAAAAATTCGAAAGAGGGGGGGGGTTTTTTTAAAAAAAAAAAGAGGGGGGGGGGGGGGGGGGGGCCCTCCCGAGAAAAAAAAAAAGGGGGCGNAAGGAGCCCCGCGGGGGCGCGGGGGGAAAAGAGAGAGAGNTTNNATGGGGGAGGGGGGGAGGANANNNNAGGGAGGGGGGGGTAGAGATGGGTTTACNNNNNNNTCTAATGAGGGGGGGGGGGGAGGAAATGAAAGACGGGGGAGGGGGGGGGGGGGGAGGGGGGGAGGGGGGAAGGCTTNNAAAAAAGAGGGGGAGAGGGGGGGGCCCCC | |||||||||
gi|188338004|gb|EY694251.1|EY694251 CS00-C3-700-023-E03-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cD AGAATCTTGATGATGCGGCAA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCAACCATCTACCCCATCAACTCATACACCTGGTGATGCCGTAGCCATGTCAGGCAGTATGCAGCATGTTAGTAACGTGCCTAAAGGTTTGATGATGTATGGTTCTGATGGAACAGGTGGTCATGCATCATCGACAAACCAGCTGGATGACATGGAACATTTTGGAGATATTGGCTCCTTAGATGATAATGTGGAATCTTTTCTCTCTCAAGATGATGGAGATGGAAGGGATCTGTTTGGCACATTGAAACGGAACCCTTCCGAACAAGCTACTGAAACTTCCAAAGCTTTCTCATTCAACGAAGTTAGTTCAATACGTAAAAGCAGTAGCAAAGTTACCTGTTGTCATTTCTCTTCAGATGGAAAGTTATTGGCCAGTGCTGGGCATGACAAGAAGGTTGTTGTTTGGAACATGGAAAATTTTCAAACTGAATGCACTCCAGATGATCACAATCATATAATTACTGATGTTCGCTTCAGACCAAATTCAACTCAGCTAGCAACATCTTCATTTGATAAGACAGTGCAAATTTGGGATGCTGCTAAACCAAACTTTTGCTTGCAGACTTATACAGGGCATAACACTCACGTGATGTCCCTTGACTTCCACCCTAAGAGAATGACCTTTTCTGCTCATGTGATGGAAACAGTGAGATTCGCTTCTGGAATCTAAGTCAGTACTCCTGCGCTCGTATTTCCAAGGGTGGTACTGTGCAAGTAAGATTCAGCCCAGACTTGGACTTCTCTTGGCGGCAACGNCCCAAAATGGTGGGTCTATCTTTGATGTTGAAACGATAGACTGACCACTCCTTCAGGGACACTCACTGAGATCACTCTGTGGGTTGGACACAATGGAAATATTTGCATCGTCANCAAAATTCTGCAAAGGGGTCTTTGCAACAGAAA | |||||||||
gi|188387717|gb|EY682577.1|EY682577 CS00-C1-650-034-D04-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRN AGAATCTTGATGATGCGGCAA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCCCACGCGTCCGGTCCCAAGGCAAATGAAGGGCATTCCCAGTTTCTTTCTGGCCCTTATGGTGCCCATGGTGGAAGGACTTCAAGGGTAACTTTTGAACTAAAATAATCTGATCTTTGGATTTCAGTGTACATGGTTACTTACTGCGAGTCCTCAACCTTAGGAAAATTCTTGTGAACCTGAAATCAGTTACAGAGACACCAGTAATGCTCTATCTGGGAGTAATTGGACTGAAAATTAAATCTTGTTGACACTCTTATCTTCAAATTTGGGCTTTTTGACTTTTATCTCATAATCAAGCTCTAAAATATCATCTGCTCTATACGACGGAAGAGCATGAAACATGTTTTGTGTATTTTAGCTTCAAATAATCTCAAGATCATGTTCTTTCTGATTCGCTTTTGTAGACCGAGAACTCTACTGCTGCAGCTGTGGGGGATTCAGCTTCCGAAGGACTTATGAGGACGTCAGAGCATCCAATTTTCTGGAATGGTGCATATCCTGGTCTTCTTACTACTGAGGAAAAAGCAACAGAGAAGAGAATCGAATTGGGTCCTCCACAAGGCCTCCCTAACTGGGCATGGCAAATGCATGGCCAGGTCAGTGGTACCCCAGCGTCACTGTTATCTAGTGCAGCATCATCAAGATTCCCATTTTCGGCTGCCCCTCCCTCCGCTGGCCGTTCTCTCATCCAAAACCTCTCAATCCGGTCGAACGTTAATCTCCGGTTTCCATTTCAACTAAAACTAATGGCCCCCAACACCTCTCATTTTTATTAACAAAAAAAACTGGCCCCAGGGCCCCCCCTAAACCCAATTTTCCCCCCCGCAAATTTGAAGGGGCC | |||||||||
gi|188280636|gb|EY749354.1|EY749354 CS00-C5-003-072-H07-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA se AGAATCTTGATGATGCGGCAA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCTCCACCTTGGAAGATTCCTACCAAAACCCTTGTCTTCCATTTTTCAATGCGTGATTCCAAAACCCTAATTTCTCAAATCAATCACTCTTACGCAACAACCGCGTCTATTATTTCTCCATTTACCGAAATTTTCTCAATTTCAAAACCGAATCGTCGAATCTCTCACTCTCCATGCTCCTAAACTCTAATTTAATTCAATAAATCTTCCGTCTGAAGAAGTTATAATTTCTCTTGATGGATCATCAAGACTCTCATGAACGTTCAAATTCATACCATCTAATACCAAATTCATCGATAACGCACTCAGCGTGGCTCGAAATCAGGCTCTTTTATGTGCGGATCTCGCCTTGCGTGATTTCCAGCGTGCCCGATCACTTAACCCTCTGTCACGAGCGTCCGCGAGATCGGCGTGTCTTTAGAAATCCAACGGCTCACGCGTTCCCTCATCCGATACGACGTCGCTAACCCTGCGTCGCGATCAGCTCAATAAGGAATCATCGGAGGAGACGTATGGGAACACGGAATAGCGTTCGGCGTGACGGGGAGTATTGAATTTTGGAGGTTTTTGACAAGGAAATGGATTTAGTGGGGGTCCGTTGGAGAGGATGGACTCCCCGTGAAAAAATGGGAATGGATTCAAGGAAGGCCGGCGGGGAACAAGGATCAGACATGCGCGGAAGGGGGACCGGCTCCAAAATGGCCTCTCAAAACAGAAGCAACGGAGGATCCCAGAACAAGGCTTTTTCCACGTGAACACCCGTCGGAACATACGCGGAGGAGAATCATGTGCAATATGCCAAAGGAGACGTATCCTCACGCGCCTTCTATAAGACACCGAGCGACGCGTACCACATTGCGTCAATTATCTCACGGAGACAAACTGTGAACATGAG | |||||||||
gi|188329282|gb|EY688891.1|EY688891 CS00-C2-003-065-H10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequ AGAATCTTGATGATGCGGCAA EST sequence (targeted fragment marked with yellow): CCCACACATACTGGAATAGCTACTGATAATACAATCGAATTGGGTCCTCCACCAGGCCTCCCTAACTGGGCATGGTAAATGATTGGCCAGGTCAGTGGTACCCCACCGTCACTGTTATCTAATGCAGCATCATCAGGATTCCCATTTTCTGCTGCCCCTCCCTCCGCTGTCGCTCTCTCATCAAAATCCTCTCAATCCTTCAAACGTCAATCTCCGTTTCATTTCCACTAATAATACTGCCCCCCACACCCCCCCGTTTTTATTATCAAAAAAAAATTGCCCGCGGGACCCCCATTACCCATTTTTCCTCCCCCCCATGGTAAGGGGCATAAAGGGCCAAATAACCGCGGGGGGTTTTCAATTTTCTTTTGTAAGTCACAAAAGGTTTTTTTTAACACAAATTCCCCGGCTCCCCCCANNNATCCCCCCACCNAAGAGAAAACATCCCCCNNNNNGGAGATGGGGGGGAAAAAAAGAGAGAACCCCCTTTAAAAAAAAAAGAGCGACCACATCCACCCCCCCGCNNNNCCNCCCCTACCCCNNNNNNNNGCATNTTGAATGTGGAAGCGACCACAGTAGCGCCTAAATATCCCCCGGGGCACNNNNNNCANATCNCCANCCACCGACCCATATACCGCCAACAACCCATCGCCTCTCCCCCTCACTCACATCGGGCNNNNNCNNNNCCCNNCNNNNNCCCCCCCACCGCGCCCCCCCACGACGGTACAAACCACCACCCCCCGCCCACGCACCATAGCGCCCCTTCCAGACCAAAAACCCCACGCGAGCGCCCGACAGCGCAGACGCGACTAGCGAAGGAGGCGCGCGAACCCCACCCGCCAAGCAGACGCGCAAGCGGAGGGCAGGTCTCATTCATACAGACTATACGAT | |||||||||
gi|188464094|gb|EY711883.1|EY711883 CS00-C3-702-012-H03-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cD AGAATCTTGATGATGCGGCAA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGACCACAATCGCAGCCTCAATAACTGTAAATCGCTCTCTCAAAGAACGCTTGTTGTTGCCGTGCCTATGAACGTTGTTGATAGCAAATAAACTTCTAATTTTTAAGAAAGGGAGCCAAGCAAGGGAGATGAGAAGGTTGCTTTTGCTTTGATCAAAGATTTGCAAAGAAATCCTAGTGGCTTCAATGTATTGGCTGCCCGTCAGGTCTTTTCTGATTTTACTAAAGAGGCACGAAGGTTCTACTCGGGTGCTGTTGTTGGTGCAAGAGGCATTAAATTGTGGTTCCCTTCCTCTGTCAATATCCCTAAACAAATGGGTTGATCTCTATGCTAAATGGAAGTAGTTATATTTTGCTTAATCATCGACAAGTGATTATTGGTTTCTGTCTATTATAGGAAGAAAGATGAAAGCTATGAGAGTGAATTCAAGGATACAATCAGTGTCTTTTTACCTTTGAGAAATGGTGCTATTATAGATATTGAAAGGGTGCAACTCGTCATATGACAACACAAAAGAAGAGTATGATGGAGATTGAGTCAGTTGGAGCTGCAGGCAAATATGATATTGGCCATGTCAAGAAGTACTTTAGAGGTACTACCAATTTGGATTTTGTTGCTGCATCAAGATTTTAGCTGTGGTTTTGGCGGACTTGATTTTTGGTGCAAGTATTTTGCGGCTGGNTGAATTGTAGTTTATTTTGGGATCGATGTAATTTGAAATACTTTCACATATAGTTTGATATGAATAAACTTGTTTATATATATATTAAATTCATGTAAAAAAAAAAAAAAAAAAG | |||||||||
gi|188363803|gb|EY695739.1|EY695739 CS00-C3-700-039-G05-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cD AGAATCTTGATGATGCGGCAA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCCCACACGTCCTACAAGGAAACCTCCAAACAGGTCTCTCTCTTCTCTGCTAACTTTTCTATTAGAGTGCTTTTCAGCATTTTTCATCTGGGATATTATTTATTCCTCTAAAGACCTCGTTGTTTCCGATTTTAAGGGTATGAACCTACTGGTTGCTCTGATATTTTTGTCGTCGTACTTGAGGCATCTTTTTAAACCTATTTGCTTCATAATCGAGATTCTCCGCGTAAAAATGGATATACCCCTCTGTCTTTGATCATCATAGCACTTTGATGGATTTCAGATATACAATGCAAAACGTGTACTCTTGCGCTTGACAAATTCGCCAATCTAAGCCTCTGGATAATTCGACTGAAGATTCATTTTCGCTGTCGACTTGAGGGACTCTGCCGTGTATATAGCTTGTGCAATACACAGTATCTTATATCTCACCGCAATACTAAGACGATGACAAAGCCCTTGATATATACGAGCTTCTCCTCCTTGCTATAGTAATACAAAGTGAAGAGTCTTACCATATTCCGGCATTTATGCATCTCTTGCAGTGACTGGCGGATATTGGAGCAAAGCCTGGCTGTCTCTATGATGCTTCTCGAATACTGAACTACTCTTAGGAATCGATTCTCTAGAAATTGAATACTGCAACTTTTGTTGACGCAGCTGATGAAAGCAATCTGCTTCATGACCATACACATATCACTCTGCTACTGGCTTCATACACTGATGGAGAAGAAGCTATGGCCAGATCTGCTAACTGGCTATTCATGAAATACATGGAACTGTGTAGCTCTGGTCACATCAAGACGAGACAATGTTACTGAATCTCACATCTCTACGCACTGTTAGATGTAGCTAGGAAGTCCCGGACTGACCTGCTATTCGNTATGAACTGTATAAGTCCCTAAGCTCCCTGCATGAAAAATCGAATAGTGAAGTGACCGTAA | |||||||||
gi|313093182|gb|HS088045.1|HS088045 2243 Valencia sweet orange callus library Citrus sinensis cDNA clone CS_211 5', mRNA sequenc AGAATCTTGATGATGCGGCAA EST sequence (targeted fragment marked with yellow): GCGTATGGCATTAGTAGATGAGAGGCTTGCTCGAGTTGGCAAAGATGTGGCCGAGCCTTCTGGAGTCTTGGCGTATGATCTTATTCAAGGAACACTTGTAAGATGGAGCTCAATGATGGACAAATCAATACCGGATCCACCAACAGCTGTTCTCTTGCACGGCATTCTTGGGAGTAGGAAAAACTGGGGAACTTTTGCCCGAAGACTGGCTCGAGCATATCCGACGTGGCAGTTTCTCCTAGTAGACCTGCGATGTCATGGTGATTCCACATCAATCAAGAAAAGGGGGCCTCACACTGTTGCCTCAACCGCCCTTGATGTCTTGAAACTGGTTGCTCAACTTAGAATAACACCCAGAGTTTTAGTTGGTCACAGCTTTGGAGGAAAAGGTGGTTCAAGTGCTTAATATGCTTCATAATTATCTCTGCAGTTGTCTTGAGCATGGTGGAACAAGCTGCCAAACCTCTTGCACGCCCAGTCAGAGTATGGGTTTTGGATGCTACTCCTGGAAAAGTTAGAGCTGGTGGAGATGGAGAGGATCATCCTGCTGAACTAATTCATTTTCTTAGTAAACTGCCAAAGGAGGTCATCTCAAAGCAGGAGGTTGTGAATGCTCTCATTCAACAAGGCTTTTCCAAAGATGTGGCACAGTGGGTGGTAACCAACCTTAAACCAGCGGCGTCTTTTGGTGCATCATCAAGTTTCTCATGGGTGTTTGATCTTGAGGGAATCGCTGAAATGTATCAGTCCTACGATGAAACAAATTTATGGAAACTCGTGGAAAACTTGCCTCAAGGTGTGCATGTAAATTTTTTGAAAGCAGAGAGAAGTTTGCACAGATGGGCCCT | |||||||||
gi|188430339|gb|EY713098.1|EY713098 CS00-C3-702-027-A04-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cD AGAATCTTGATGATGCGGCAA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCCATAATCTAGATTTGAGTTTGGGCAGTTCAGCTTCTAATCAGCAAAGCAGTGCGGACTTTGCTAATAGAATGCAATATACTGTAATGGAACGGCCTGCTCCGGCATCATTGCCCAATGAAGTTGACTGGCACAACCGGGGTTATAGGCCTAAGCAGCAAGAAGCGTACAGTAGGCAGCATGATCTACCGTACAAGACAGATGGGTATAGCGAGGCTGAAACTATGCAACTTCTCAGCCAAACCCATCTTCAGTCACCAGCTTCATCATCGCTCAATAAGTCCAGTGAGATGCAAAGATATGAGCAATTCACGAGATCTGGTGAATCCCATTTGCTACATATGGGTCCCCCACAATGTAACCAATCAAACTATCAAGTAGACTCATCAGTTAACCCCAGGCACAGGCAGCAGTAAGACAGGCCGAATTGGGAATGAACTTTCACTGTCAACAAATGATCATCATCAACAATGGCAATCTGGTCCTCATATGTTTGCAACTGCTGCAGCATCATCAGGATTCCCTCAGCAGATTACATCCTCTCACTCTCAGAATTGGCTGCAGAATAATGGATTCCACTCCCTTAGTGAGACCTCCTAAGCATATGGCATAATGATCGCCTAATCTCTCATTTACTTCAGAATGTTGCTTGTAAGCATGTAAAATCATCAATTGAGTACTCGATCAATATACTTGCAAATTTCCCGGAGAGGGAAGACCCCTTACAAAAACCAAGATGGGCCTGCTGGGCAAAAGGGCGGACCGCTCTAAAGACCAAACTTACCTACGCGGCCTGCAACGCATAACCCTTCAAAGGGGCCCTAAATTCATTCACCTGGCGGCGGTTACACAGACCGGCGGGGAAAACTGTGGGGGCCAAATTAATCCGCTTGA | |||||||||
gi|188463684|gb|EY650967.1|EY650967 CS00-C1-100-016-F10-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequ AGAATCTTGATGATGCGGCAA EST sequence (targeted fragment marked with yellow): CCGGNAATACCGGCTCGACCCACGCGTCCGTGAATTTATTACCCTGAATTCTCAACCTCAATAGGGTTCCAACCAACACATATCTACCTTTTGGTTTTCTGCAAATCAGGGCTTATGACAAGGCAGCTATCAAATGCAACGGCAGGGAGGCAGTCACCAACTTTGAGCCAAGCACATATGAAGGGGAGATGATTACTGAGGGCAGTAATGAAGGTGGTGATCATAATCTTGATTTGAACTTGGGGATATCTTCATCGTTTGGCAGTGGTCCCAAGGCAAATGAAGGGCATTCCCAGTTTCTTTCTGGCCCTTATGGTGCCCATGGTGGAAGGACTTCAAGGACCGAGAACTCTACTGCTGCAGCTGTGGGGGATTCAGCTTCCGAAGGACTTATGAGGACGTCAGAGCATCCAATTTTCTGGAATGGTGCATATCCTGGTCTTCTTACTACTGAGGAAAAAGCAACAGAGAAGAGAATCGAATTGGGTCCTCCACAAGGCCTCCCTAACTGGGCATGGCAAATGCATGGCCAGGTCAGTGGTACCCCAGCGTCACTGTTATCTAGTGCAGCATCATCAGGATTCCCATTTTCGGCTGCCCCTCCCTCCGCTGCCGTTCTCTCATCAAAACCTCTCAATCCGTCAGACGTCAATCTCTGTTTCACTTCAACTAATACTACTGCCCCCAACACCTCTCAGTTTTATTATCAGATGAAACTGCCGCAGGCACCACCATAGCCTATTTTCATCCCGCGATGTTGAGTGCCTATANGCAACAATACAGCAGTGGTCTTCAAATTCGTTGTATGATTCAAATAGTGATTCATATACACCAAAGACTTGNTTTCTGACTCATTTGCTAAACATCAATATAACTCTGGTTNGATGTAAAAAAAAAAAAAAGGGCNGNCGCTCTAAAGA | |||||||||