| mature miRNA: AGAATCTTGATGATGCTGCA species: Manihot esculenta database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|242128187|gb|GR421721.1|GR421721 MAGR01_A06 MAGR Manihot esculenta cDNA clone MAGR01_A06, mRNA sequence AGAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): CGGGAATCGATAGCGTGGTCGCGGCCGAGGTACCAATGATTCTATTATACCTATCACTAATGAGAATGATAAGGTGAAGGACAAGAAAAATGAAATATATATTAAAAAAATATTGGGGAAGGAATCTTAACAATATTTAGGAAGATGGGGCAAACACATTAAGTTATAACAAAGGTTATATTCTGTGAGAGCAGACAGCAACAATTAATTGGAGGTTTGCACTTTTTCTTCAGTAGTGTCATCTCCAAGTGATGCTGTAAAATTACGTCTCTCCTCAGCAGTAGCTGTAATAACTGGCATCCATACATCAGCAGTGCCACTCAAGAGAGACTGCACCTGTGGATCTGCAGCCATTGCTGAGGATATCATTTCATCTACATCATCCAATTTTGCTGATAATTTATCCAACTCTCTTGCTATTTCCAGCTCATCGAGATTCTTTGTTGACTTTGATGGAACTTTAGTAACCTCTAATCCCAGTGCTTCAATTTTAGATCGCAATTCAACTTCTTCTAGATTGGTTAGGGCCTCCACTTGCTGGAGGAGATTGGAAAGGAGCTGAAAAAGCT | |||||||||
gi|119006745|gb|DV441812.1|DV441812 CV01005A2C01.f1 CV01-normalized library Manihot esculenta cDNA clone CV01005A2C01.f1, mRNA s AGAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): TGGGTTGGGCAGGATTGGCATGGCAATTGCCACAAGAGCAGAAGCATTTAGCTGTCCAATTAGTTACTATGGTAGAACAGAGAAACCGGATGTAAAATACAAGTTCTATCCAAGCGTTGTTGAATTGGCTGCCAACTGTCACATCCTTGTTGTTGCATGTGCGCTAACAGAAGAAACCCGCCACATTGTCAATCGAGAAGTCATCAATGCATTAGGTCCGAAGGGGATCCTCATCAACATTGGTAGAGGTCCTCATGTTGATGAACCTGAGCTGGTGTCTGCACTGCTTGAAGGAAGGTTAGGTGGTGCTGGGCTTGATGTGTTTGAAGACGAGCCTAATGTCCCTGAGCAGCTGTTTGGTCTTGAAAATGTAGTTCTATTGCCTCACGTCGGAAGCGGTACGGTAGAAACCAGACAAGCCATGGCTGACCTTGTTGTTGGTAACTTGGAAGCACATTTCTTGAACAAACCTCTGTTAACTCCAGTGGTCTGATGTTGACATAAAAATTTGTGAATACAAGACTGATCAGAGGCATCATCATGATTCTGTGAATGGCAATTGATCTGGAGATCATTATTTTCCAGGACTTGCAGGAATGCCTTGATGGAAGGAAGTATTCTCAAGCTTCCAATTTGTATGTCTGAATTTATTTTCTTCTTAGCACCCTTTA | |||||||||
gi|119019087|gb|DV456626.1|DV456626 CV02022A1E11.f1 CV02-normalized library Manihot esculenta cDNA clone CV02022A1E11.f1, mRNA s AGAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): GTCACAGGGAGCAATCCATTGACCAGGGAAATGGCGGCTGAGAATGGAGATATGGAAGTGAAGGAATCGACGAAGAAGCAGAAGCACAAGGGAAAGCATGACAAGCCGAAGCCGTGGGACGAGGACCCAAACATCGACCATTGGAAGATTGAAAAATTCGATGCCTCTTGGAATGAAGGCGGCATGCTCGAAAAAAATACTTGCAAGAAGTATGGCCAATGGTGAAATCTGCTTTGAAGGAATATGGCATTGCATGTGAGTTGAACCTGGTTGAGGGATCAATGACTGTTTCAACTACTAGAAAAACTAGGGACCCCTATATCATTGTCAAAGCGAGGGATCTCATTAAGCTTTTATCAAGAAGTGTTCCTGCACCTCAGGCAATCAGAATTCTGAATGATGAAATGCAGTGCGACATCATCAAGATTGGGAATTTGGTCCGCAATAAGGAGCGATTTGTTAAACGACGACAGCATCTTGTGGGTCCAAACTCTTCAACTTTGAAGGCCCTTGAGATTTTGACAGGCTGCTACATCTTAGTTCAGGGTAACACTGTTGCTGCTATGGGCTCATTCAAAGGTCTGAAACAAGTAAGAAGGATTGTGGAAGACTGCATTCAGAATAAAATGCATCCTGTGTACCATATCAAGATTCTCATGATGAAGAAAGAACTTGAAAAGGATCCAGCACTTAAAAATGAGAACTGGGACAGGTTTCTTCCCAAGTTTAAGA | |||||||||
gi|56922630|gb|CK646967.1|CK646967 c.13.D14.5 CM523-7 cassava lambda zap Manihot esculenta cDNA 5', mRNA sequence AGAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): GTTTTAATTTGCGCCGCTTTTCTGCCTCAGTAGTTGCAGAATCCCGTTAACGTGCGCCATGGGTCTGCTTGACCAGCTGTGGGACGATACTGTTGCGGGGCCTCCACCGGATAACGGCCTTGGCAAGCTGCGGAAGCATTCGACCTTCAACTTCCGGTCATCCTCTGGCAAGGGTATGCAGCGTTTTTGCTTACTTAGGCCCATGGAGGATGATCTATAGAACGTTAATTTTGCAAAACGGGAGGCCTATATAAAACTATATATCGAGATCGCAAAAACTTGTGTTCATCTCAATCGGAGCGCAGCTTCATCGAGATTCAACATGTTTTGTTTTCATAAGTTATTCGATTAATGATTCAATTATCGCAACATTAATTACAAATCCAGTGATTTTTAACTC | |||||||||
gi|56919971|gb|CK644308.1|CK644308 si.01.L5.5 MCol1522 cassava lambda zap Manihot esculenta cDNA 5', mRNA sequence AGAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): GAATGATGAAATGCAGTGCGACATCATCAAGATTGGGAATTTGGTCCGCAATAAGGAGCGATTTGTTAAACGACGACAGCATCTTGTGGGTCCAAACTCTTCAACTTTGAAGGCCCTTGAGATTTTGACAGGCTGCTACATCTTAGTTCAGGGTAACACTGTTGCTGCTATGGGCTCATTCAAAGGTCTGAAACAAGTGAGAAGGATTGTGGAAGACTGCATTCAGAATAAAATGCATCCTGTGTACCATATCAAGATTCTCATGATGAAGAAAGAACTTGAAAAGGATCCAGCACTTAAAAATGAGAACTGGGACAGGTTTCTTCCCAAGTTTAAGAAGAAAAATGTCAAACAAAATAAGGTTAAGAGCAAAGAAAAGAAACCATATACACCATTCCCTCCTCCTCAACCACCTAGCAAGGTTGATATGCAACTTGAGACAGGAGAAT | |||||||||
gi|56924901|gb|CK649238.1|CK649238 c.09.A12.5 CM523-7 cassava lambda zap Manihot esculenta cDNA 5', mRNA sequence AGAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): CATTCAGAATAAAATGCATCCTGTGTACCATATCAAGATTCTCATGATGAAGAAAGAACTTGAAAAGGATCCAGCACTTAAAAATGAGAACTGGGACAGGTTTCTTCCCAAGTTTAAGAAGAAAAATGTCAAACAAAATAAGGTTAAGAGCAAAGAAAAGAAACCATATACACCATTCCCTCCTCCTCAACCACCTAGCAAGGTTGATATGCAACTTGAGACAGGAGAATACTTTTGGAGCAACCAGAAGAAACAAGCAAAGAAGTGGCAAGAGAAACAGGAGAAGCAAGCAGAAAAAACAGCTGAAAACAAACGAAAACGAGAAGCTGCATTTATTCCTCCCGAGGAGCC | |||||||||
gi|164400158|gb|DB951894.1|DB951894 DB951894 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_041_N1 AGAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): AATGACAATGTTCTCTACCGCAGCATCATCAGGATTCACTTTTTCAGCTACACCTCCCTCTGCTGCCACTCTTCCAGCGAAAACTCTCAACCAAGCAGCCCAAAATTTATGTTTTACGCCACCTGCTACCATGACTCCTAGTAGCTCTCACTTCTATTATCCAGAGAAGCGTCCACGGGCTCCACCATAACTATTCCCTCTGCACTGG | |||||||||
gi|119019087|gb|DV456626.1|DV456626 CV02022A1E11.f1 CV02-normalized library Manihot esculenta cDNA clone CV02022A1E11.f1, mRNA s AGAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): GTCACAGGGAGCAATCCATTGACCAGGGAAATGGCGGCTGAGAATGGAGATATGGAAGTGAAGGAATCGACGAAGAAGCAGAAGCACAAGGGAAAGCATGACAAGCCGAAGCCGTGGGACGAGGACCCAAACATCGACCATTGGAAGATTGAAAAATTCGATGCCTCTTGGAATGAAGGCGGCATGCTCGAAAAAAATACTTGCAAGAAGTATGGCCAATGGTGAAATCTGCTTTGAAGGAATATGGCATTGCATGTGAGTTGAACCTGGTTGAGGGATCAATGACTGTTTCAACTACTAGAAAAACTAGGGACCCCTATATCATTGTCAAAGCGAGGGATCTCATTAAGCTTTTATCAAGAAGTGTTCCTGCACCTCAGGCAATCAGAATTCTGAATGATGAAATGCAGTGCGACATCATCAAGATTGGGAATTTGGTCCGCAATAAGGAGCGATTTGTTAAACGACGACAGCATCTTGTGGGTCCAAACTCTTCAACTTTGAAGGCCCTTGAGATTTTGACAGGCTGCTACATCTTAGTTCAGGGTAACACTGTTGCTGCTATGGGCTCATTCAAAGGTCTGAAACAAGTAAGAAGGATTGTGGAAGACTGCATTCAGAATAAAATGCATCCTGTGTACCATATCAAGATTCTCATGATGAAGAAAGAACTTGAAAAGGATCCAGCACTTAAAAATGAGAACTGGGACAGGTTTCTTCCCAAGTTTAAGA | |||||||||
gi|119011968|gb|DV451573.1|DV451573 CV02007B1E02.f1 CV02-normalized library Manihot esculenta cDNA clone CV02007B1E02.f1, mRNA s AGAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): CGCTCCNNNACCGAATTTAAATATCAAACTCTCTCTCTCTCTCTCTCTCTCTCTGCTTCTTCTCAATCTCGTCGATCTAGTGCTGAATCATAGTCCATATACAACATGATACAGCTCCTTTACACTGTAATCTTTGCCGAAATGGCCTTGATTTTGACGTTTCTGTTCAAAACCCCTTTGAGGAAGCTTGTTATCATGACTTTGGATCGGGTGAAGCGAGGGAGGGGACCTGTTATGGTCAAGACCATCGCCGGAACTGTCTTCATTGTGCTCTTGTCTAGTGTTTACAGTATGATCAAGATTCAAAACCGGATGCTCGAGGCTGGTGCTCCTAATCCTACCGACCAGGTCCTTATGTCCAGGCATATGCTTGAAGCGTCTCTCATGGGATTCTTGCTATTCCTCTCGTTGATGATAGATAGATTGCACCATTACATTAGAGAACTACGTTTACTTAGAAAGACGATGGAAGCTGCTAAGAAACAAAGCCAGAGCCTTGATGATGGGAAAAATGGTAATTCAGAGAAGACCAAAGGGCTGAAGGATGAGATTGTTAACTTGAAGACTAAGATCAAGAACCTAGAATCTGAATGTGAGGGAAAAGCGAAACAAGCAAAGGCAGCAGAAACTGAAGCTGAGGCTTTGCGAAAACAATCTGAAGGTTTCCTTCTAGAGTATGATCGCTTGCTAGAGGACAATCAGAACCTAAGAAACCAATTGGAGTCGATAGATCAGACTTTATTACAGTCTGATGACAAGAAGAATATGTGAGATAGTAATTACCCAATGCAGT | |||||||||
gi|56920704|gb|CK645041.1|CK645041 si.04.I16.5 MCol1522 cassava lambda zap Manihot esculenta cDNA 5', mRNA sequence AGAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): GTGGGTTTCCTTTGGTTCAAGGTGGGTAATGGTATTCTTCTAGGGTTGGGGTTTGGCGATCTGGTTGCTTGATGAGATCTCAGAAAAACCATTGATCAGTCAGTATTGGCGGATGCGTCACCATCAAGATTCACAAAACTATGAAGGCTTCATCGGGACGGTGAGTGTACGGCCGGCGGCGGTGGCTCTTCTTACTTAAAAGGTTTCCTTTTTCGTATGAGAATCTTGATGATGCTGCATCGGCAAATATCTGACTACAATATGGGGACTTGTTTACTTACCTTATCAAAAGATCATAATTCGCCAGGGATACGGAGGAAATGAGTTCCGGGTTTGCTGGATCAAGGTATTAAAGAACTACTTTAAGTTGCTCGATTATTACAATGAAGGTGATGCCTCTTTTTCTTTAACTTGTCCATAATTTCATGCTTTTTCTTCACAGTGCTTAATTTCAGATTACTGTATCTAAGATTGAATAAACAGC | |||||||||
gi|164392772|gb|DB932384.1|DB932384 DB932384 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_035_B1 AGAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): GGTCTTCCCTTCTGTCTAGGGTTTTAGGCATTGAGTATCAGTCACAGGGAGCAATCAATTAACCAGGGAAATGGCGGCTGAGAATGGAGATATGGAAGTGAAGGAATCGACGAAGAAGCAGAAGCACAAGGGAAAGCATGACAAGCCGAAGCCGTGGGACGAGGACCCAAACATCGACCATTGGAAGATTGAAAAATTCGATGCCTCTTGGAATGAAGGCGGCATGCTCGAAGTCAGTTCATTCTCCACTATTTTCCCTACATACAGAGAAAAATACTTGCAAGAAGTATGGCCAATGGTGAAATCTGCTTTGAAGGAATATGGCATTGCATGTGAGTTGAACCTGGTTGAGGGATCAATGACTGTTTCAACTACTAGAAAAACTAGGGACCCCTATATCATTGTCAAAGCGAGGGATCTCATTAAGCTTTTATCAAGAAGTGTTCCTGCACCTCAGGCAATCAGAATTCTGAATGATGAAATGCAGTGCGACATCATCAAGATTGGGAATTTG | |||||||||
gi|219216567|gb|FG805158.1|FG805158 K024H12 Cassava root 210-day-old plants cDNA library Manihot esculenta cDNA, mRNA sequence AGAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): ACTAATGGCTTAGCATGCTCCATGTATCTCTCTCTCGATGACGGCTTCTGGAGTGGGAGCTTCAGCGAATTGTATAAGCCCCCAAAAATTGTGGAAACTAAAACTTTAATAGAGACACTGGAAAATGCCTCCACCATCATCTTTCATGCCTGGTGATCCTTCTATGACGCACATGCCAATGAATGGCAGCAATATTGGAGATGACCTTCATGAGGTGGAACTTTAGAAGTTGTAAATACCAAGTTTTGTTCCTTGTGATCCAATACAGTACTTGGGATGGGCATCGCCATGCACATCTCGAAAAGGCCCAATGTTTGCACCAGCATCAGGATTCAGAAAAGAAAGTAAAATCTGATTTTCACACAATTTCCCGTGTCAACTCTCTCGCCTCTTAAATGTAAGTGGAAATGTGGTCGGCATATATTTTATTGCAAACTAAGCATCGGCTTTATTTTAATCTCACAGGAATTGCAATCTTCAAATGCTTGAGGAGCTGGTATCAGTACTAATTAACAGCAAAACAAAGGCATCCTTCACAGGCATTGTTGTACCGTTCATTTGTTCATTAGGTTGAGAACCAGGAAATGTCTGGTGAGCATGATGGCAGCAT | |||||||||