| mature miRNA: AGAATCTTGATGATGCTGCA species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|37705608|gb|CF756527.1|CF756527 DSAF1_6_C12.b1_A011 Drought-stressed after flowering Sorghum bicolor cDNA clone DSAF1_6_C12_A AGAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): CTCCAGGCTCCTGCGCAGCTCCAAATACCGAGTTACGACGGTGGACAGCGGCAAGAGAGCCTTGGAGGTTCTCAGCCTGGATGACAGCGTGCACATGATCATCACGGATTACTGCATGCCGGAGATGAGCGGGTACGAGCTCCTGAAGCGGGTCAAGGAGTCAGCTGAGCTGCGGGAGATCCCCGTGGTGCTCATGTCGTCGGAGAACTCGCCGACGAGGATCCGGCGGTGCCTGGAGGAGGGTGCCGAGGAGTTCCTCATCAAGCCGGTGAGGGCCTCCGACGTGTCGCGCCTCTGCAGCCGCCTCGTCAGCACCTGCAGGCGCTAGCAGCTTGCTTCTTCGATTCACTTCTTCCTTGAGCTGGATGGAATAGAATTATTGATGGCTCCTAGCTAGCTCGCCAGCAAGCCTACTAATAATATATCCCATCCCATGCATGTATACTGACCGACCAATGCAACAACCAAACAACCAGCAGATGCAGATCATCAGGATTCAGGGTTAGTTTATTTAT | |||||||||
gi|57804207|gb|CX606564.1|CX606564 ANR1_3_F03.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_3_F03_A002 5', mRNA sequen AGAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): CAGGCAGGCATGTCGACACGACGGTGACGCCGGAGCCGCCGCACGTCCTGGCCGTGGACGATAGCATCGTCGATCGTGCTGTCATCTCCAGGCTCCTGCGCAGCTCCAAATACCGAGTTACGACGGTGGACAGCGGCAAGAGAGCCTTGGAGGTTCTCAGCCTGGATGACAGCGTGCACATGATCATCACGGATTACTGCATGCCGGAGATGAGCGGGTACGAGCTCCTGAAGCGGGTCAAGGAGTCAGCTGAGCTGCGGGAGATCCCCGTGGTGCTCATGTCGTCGGAGAACTCGCCGACGAGGATCCGGCGGTGCCTGGAGGAGGGTGCCGAGGAGTTCCTCATCAAGCCGGTGAGGGCCTCCGACGTGTCGCGCCTCTGCAGCCGCCTCGTCAGCACCTGCAGGCGCTAGCAGCTTGCTTCTTCGATTCACTTCTTCCTTGAGCTGGATGGAATAGAATTATTGATGGCTCCTAGCTAGCTCGCCAGCAAGCCTACTAATAATATATCCCATCCCATGCATGTATACTGACCGACCAATGCAACAACCAAACAACCAGCAGATGCAGATCATCAGGATTCAGGGTTAGTTTATTTATAGGATGGGGTTGTTCGTGGATGAGATAGATAGAGGGCTGAATTTGACCCTCCCTTGAAATTAGTATACTTGACGCAGGAGGAACGCAATTCTGTACATTTTGTAATACTAATAATGACATTAGCATTTTACCCGATTGAGGCAGTT | |||||||||
gi|160712604|gb|EH411646.1|EH411646 RTHAIR1_70_H12.g1_A002 Sorghum bicolor BTx623 Root hair Sorghum bicolor cDNA clone RTHAIR1_7 AGAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): GTTCCCTCTTATGACTGAGCATCCACCGGCCTGGCCTGCTCAATCTCACCCCTTCTTCACAAATCATGAGAGTACATCATCGAGAGACCTTAACAGGAGGCCTGAGGGGGGTGCTCCTAGCTGGGCATGGAAGGTGACAGCAGCTCCTCCTCACACCCTGCCATTGCCGCTGTTCTCTTCGTCATCGTCATCCGCTGCAGCATCATCAGGATTCTCCAATACCGCCACGACAGCTGCCCCATCGGCCTCCCTCCGGTTCGATGCACCGCCATCGTCGTCATCGAGCCATCATCATCGCCGCTGAGAATCAAGAAGCCACACTGTAAATCTGCTGGGAAGCTGGCATTTTTCCCCCCTCTGGGCGTTGCAACTTTTTCGGTTTTGCGCCGGCTGGGGTGGTTTCTTGTAGTGGATCGATTGGATTCTTCATAACTGTATTTGCACACTGTCATACTGCCCAAGTGAAAATGCTCCTCTCTTTACACTACACAGTACACACACTGCTGCTCTTGGAGCTACTGTTGCTGCTAGAGATTGACTAACTTAAGCATCTGAGATACTTTGATTGATCTATATATACATTGTGTAGAGAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|160710010|gb|EH410468.1|EH410468 RTHAIR1_54_A03.g1_A002 Sorghum bicolor BTx623 Root hair Sorghum bicolor cDNA clone RTHAIR1_5 AGAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): GGGGGGTGCTCCTAGCTGGGCATGGAAGGGGACAGCAGCTCCTCCTCACACCCTGCCATTGGCGCTGTTCTCTTCGGCATCGTCATCCGCTGCAGCATCATCAGGATTCTCCAATACCGCCACGACAGCTGCCCCATCGGGCTCCCTCCG | |||||||||
gi|9856076|gb|BE601003.1|BE601003 PI1_95_G03.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence AGAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): GCACGAGGATATCTTGGGCTATTCGACAGCGAAGTAGAGGCTGCAAGGGCTTACGATAAGGCCGCAATCAAATGCAATGGTAGAGAGGCCGTGACGAATTTCGAGCCAAGCACATATGATGGGGAGCTGCTGACTGAAGTTAGCACTGAAGTTGCTGAAGTTGATCTGAACTTGAGCATATCTCAACCGGCATCTCAGAGCCCCAAAAGAGATAAGAGCTGCCTAGGCCTGCAGCTCCACCATGGATCATTTGAGGGCTCCGAATCGAAAAAAACAAAGATTGATACTCCCTCTGAGCTGTCGGGCCACCCTCATCGGTTCCCTCTTATGACTGAGCATCCACCGGCCTGGCCTGCTCAATCTCACCCCTTCTTCACAAATCATGAGAGTACATCATCGAGAGACCTTAACAGGAGGCCTGAGGGGGGTGCTCCTAGCTGGGCATGGAAGGTGACAGCAGCTCCTCCTCACACCCTGCCATTGCCGCTGTTCTCTTCGTCATCGTCATCCGCTGCAGCATCATCAGGATTCTCCAATACCGG | |||||||||
gi|9850245|gb|BE595172.1|BE595172 PI1_46_G11.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence AGAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): GCACGAGGATATCTTGGGCTATTCGACAGCGAAGTAGAGGCTGCAAGGGCTTACGATAAGGCCGCAATCAAATGCAATGGTAGAGAGGCCGTGACGAATTTCGAGCCAAGCACATATGATGGGGAGCTGCTGACTGAAGTTAGCACTGAAGTTGCTGAAGTTGATCTGAACTTGAGCATATCTCAACCGGCATCTCAGAGCCCCAAAAGAGATAAGAGCTGCCTAAGCCTGCAGCTCCACCATGGATCATTTGAGGGCTCCGAATCGAAAAAAACAAAGATTGATACTCCCTCTGAGCTGTCGGGCCACCCTCATCGGTTCCCTCTTATGACTGAGCATCCACCGGCCTGGCCTGCTCAATCTCACCCCTTCTTCACAAATCATGAGAGTACATCATCGAGAGACCTTAACAGGAGGCCTGAGGGGGGTGCTCCTAGCTGGGCATGGAACGTGACAGCAGCTCCTCCTCACACCCTGCCATTGCCGCTGTTCTCTTCGTCATCGTCATCCGCTGCAGCATCATCAGGATTCTCCAATACCGCCACGACAGCTGCCCCATCGG | |||||||||
gi|57816779|gb|CX617992.1|CX617992 GABR1_37_C07.b1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_3 AGAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): ACTAATATATTGTCATTATTTTGCTGGCTCTTGCTGCTTCTCTAGCATCAAGACAAAACATTCCTACAAACCACACTGAAATACGTTCAGCTATAAGATTCAGTAAAAACAAATAAACTATTTTGTACTGGCAAGTGCTCCTGGTCTCCTGGAGCCTTACAATATCTAAAATACAAGCTATCATTTCGGAGCAGCTACAACTAAAATACCTACTCCAGCTGCCCATTTGCTGCAACACCATGCTACACATTGAGGAATACCTTCAGCTTTATCAAGATTGTAAGAACCGATCCGCCTACATGGATATTACATGTGAACTTCACGCTTGATCCTCTTCCATAATCAAATCATCGACTGCATTTTACTTGCCCAAATGTCAGTAGATGTTCTTTTACAATGAACATGCAAGAAACATCCTTGTCTATATCTGCATGCGGTTCCTACAAAGCTGAGCTCTCCGGCTCCATTTCTGTTTACCGTGAGAGAGAGGATGTTGAGCGGCCCTTGGCGATACGGCTCGTCAGATCCGCGATGGGCAGGGAGGTAGGGTTTCAAAGAGACGATTGGTACTCGTGCGCGGAATCCAGGATAGGGTAAGGGAAGTGGCGGAGGAGGAGGAGCGGCGGCGGCGGCGGCGGCGGCGGCANTGACGGTGACGGTGACGGCGG | |||||||||
gi|160710879|gb|EH410819.1|EH410819 RTHAIR1_61_C07.g1_A002 Sorghum bicolor BTx623 Root hair Sorghum bicolor cDNA clone RTHAIR1_6 AGAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): CAACGACGTGCAGGGCCTGCAAATCAGGATGGACGATGGCAAATGGCACCCCGTTGAACCTCTCGACGGCGCACTCATTGTCAGCGTCGGTGACATCATCGAGATTCTAAGCAATGGGAAGTACAGAAGCATTGAGCACAGAGCCGTGGTGCACCCGGACAAAGAGCGCATCTCAGCGGCAATGTTCCATCAGCCGCGCGGTAGCATAACGGTGGAACCTCTACCGGAGTTGGTGAAGAAAGATGGCGGCGTAGCACGGTACAAATCAGTTGGCTACGCCGAATTCATGAAGCGCTTCTTCTCAGCCAAACTCGATGGACGAAAAGGCCACCTCGACCACTTCAGGGTCTAATTAAAAGATAATGAAATATCATGATATATCAAAAGAAATGTCAGGCATATCANAAGATAATGTTCTCCCGTCAATGACGTATATGGATTACTGATTGTTTCTATGCTGGGGCTACCAGCTTGTGATGCTTGACATAAGTAAAAATAAAAGGCACTTGTGATGTCA | |||||||||
gi|31347500|gb|CD431857.1|CD431857 ETH1_11_E11.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA clone ETH1_11_E11_A002 5' AGAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): AATAAAACCGAGGAGAGAACACTTAACTAAAATTTCGATGGCTGAATACGAGACCCACGTGTTTTCTAGTCTTAGTGAAAACATTGAAAAAATCGTTTTGGAAAATATTACCTCAGTCACCTTGAATACTGAGGTTCTCAAAGTGAATTTTGAGGCAATTGTGTCTATTCTCAAGGGATTGGTTAAAAGAATGGACCAAAGTCAAGATGGAGCTAATCAAAATGGAAAGGATATCAAGGATCTTAAGCTTAGGCTTGAAAAATTAGAAGACAAGCAAAATGCGGACAAAATTGAGTTGAGTGACAAAATATTCAACAATGAACAGTCTGTTAAGAGCTTAAAAGAAGAAACAAACCAGAATACTCAGAATATTGAAAAGCTTCAGGATGCACTTAAAGAGTTTAAGGAGAATCAAACTAACCTGAACAATAACATCGAAAACGATTTGAATAACATTAAGCAAAAGCTTGGAAAACACGATAACCAGATCCAAGATCTTCTAAATAAGATTGCATTGGGCACTAACAATAATAACTCCGCAGACCAGCTTGCTGAAATCCAGAAATTACTCGATAATTTCGTGACAAAGGATGAGTTCAATGGCTACAAGGACCAAACAAACCAAACTTTGCAATCTCATCAAGACTCTATTGATGATTTATATAAGCAATTGAAAGAGTGCAAGGCTTTGATCTCAGATAAGCTTAACTGTGACACCTTTGATGAGCACCTCGCTGACTATAACAGCATCAAAAACCTCGTCATCAGTTT | |||||||||
gi|9297471|gb|BE355914.1|BE355914 DG1_11_C12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence AGAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): CAATCCAAGGCGGCGCTGGCGTCGATCTTGAGCAGATATTTGGAGAAGAAGTGACTTTACAGGATGTTTTGGAGTTATTCGTCAAGCACGACCTATTTGAACAATTCAGTCTTCGGCTGGTGGCCAACAAGAAGATTGGCCACTTATTCGTCAAGACGCAAGAGCTTCGAGTGCAAGTCAGTGTCGCTAGCATCCTAGATCTATCAGAGGAACACCACCCTCTCATTCTGGCAGCAGCATTGAGATTCTTGAAGAAGCAAGGACCAAAACACTTGCTACACCGAGAGAGGTTTGT | |||||||||
gi|6676425|gb|AW286581.1|AW286581 LG1_334_F10.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence AGAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): CCGCGCGGATGCGCTACACAGTGCCACTGCCGAGGAGAGGGGCACGTGGGTACCCGACAACATCATGGGCAACAATGCTCCATCCATGGAGCCGATGCCACTTGAATGGACTGTTTGATGTAACCTACTGCACACATCGTTCGAAGTTTGTTTTCTTTGGATTCGAGCATTTTGAAGCGACCGCATTTGCGCAATGCTTTGGGAATTCCCAAAGGGCACACAAAGCAAACAAAAAAGGTTACATGGCAGGTTTCATGGTTGACCCGTACACAGAGACGGCTGATGACATGCAATGACTACGAGAATCGTTTGCTGTATTATCAAGGTTTTTCTTATTTTTTTCTTTCTCTCTCTCTATTACCGATCGATACCACTGGGAGCTTGTTGGCGTTGGTAAGGGAAGGACTAATGAGTGAATATGAATGGGAACAACATGTATATCTGGACGTGGCTGGCCGCAGGATGTAGTGTTCTATCTCTTCTGATTTTTCACTCAATCCATACTCTGCTACATTTAGCAACATCAATCTGAACATATTTC | |||||||||
gi|160713056|gb|EH411223.1|EH411223 RTHAIR1_65_H02.g1_A002 Sorghum bicolor BTx623 Root hair Sorghum bicolor cDNA clone RTHAIR1_6 AGAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): CTTCGTCATCGTCATCCGCTGCAGCATCATCAGGATTCTCCAATACCGCCACGACAGCTGCCCCATCGGCCTCCCTCCGGTTCGATGCACCGCCATCGTCGTCATCGAGCCATCATCATCGCCGCTGAGAATCAAGAAGCCACACTGTAAATCTGCTGGGAAGCTGGCATTTTTCCCCCCTCTGGGCGTTGCAACTTTTTCGGTTTTGCGCCGGCTGGGGTGGTTTCTTGTAGTGGATCGATTGGATTCTTCATAACTGTATTTGCACACTGTCATACTGCCCAAGTGAAAATGCTCCTCTCTTTACACTACACAGTACACACACTGCTGCTCTTGGAGCTACTGTTGCTGCTAGAGATTGACTAACTTAAGCATCTGAGATACTTTGATTGATCTATATATACATTGTGTAGAGAATATATCATTGCTGAAACTATTGACAGAAGTATATACAGGTTTGTTCCAGGTCACTCACCACTAGCTTGGTAATTTGTAATCTCTGCTACAAGGGTTCTTTTATAGCTACGTCATGTAATTCTCTTAATCTTAATGAAACA | |||||||||
gi|45975008|gb|CN139624.1|CN139624 OX1_23_D10.b1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_23_D1 AGAATCTTGATGATGCTGCA EST sequence (targeted fragment marked with yellow): CACAAGCTCTTGATTCCACTATGTAAATCAACAAAGAAAGTTCATATGGATACGATGAGAAACAGTGAATATGAACCTACACAATGCTATAAACTAGTATAGTACCTATATATTCAGAAGGAAAATCTGTAGCTACACTCTGAACATCACCAATAGATGCCTCAATGAATCAAATGCCAAATGGCTGCAAGATTAACCCCAAGCAGTGACGAGCAATCTAGTTCAAGCACCTTCTTCAGTTTTCTTCTTTATTTTGAGGGCAGCGCTGACGACGTTTCCCCTTGTAATCATCCCAACTAGTTTCCCCATGCTATCAACTACAGGTAATCTCCGGTATTTAGTTTCAAGCAGCAACCTTGTAGCAGCATCAAGATTAGTATTTTGACGCACCGCTAAAGGTGAAGACGTCATTACATCACCAATGACCTTCCCATTAGTTTTGCTTAATAGTCTCTGTATCTCGTGGAAAGTCTTCCATGTACTATCCACATCAGGAAACATGTTTGTATTTGTATCGGGCAATTCATTTCCTGAAATCGAATCCAAAGCTAGCAGATCATAATCTGATACAACCCCAACCAACTTCCCATCATCGTCAACCACAGGTAAGCCAGAGATCTTGTGCTGTACCAGCAGCTCCAGGGCTTGGTCAACCGGTGTAGAAGGTTGGACAACATGGAGATTGTCCCTTCCTGTCATGAAGTCACCAACCGTGTACACTCCATTGCTATGCCCGGAGATGCCTCCCGCGGCTGGCGCGGCAACTGCGGCGGAGCGCGCGCGGACGGACCTGCA | |||||||||