| mature miRNA: AGAATCTTGATGATGCTGCAT species: Brassica oleracea database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|150908786|gb|ES939244.1|ES939244 46RDOAG_UP_073_F10_02FEB2006_070 Brassica oleracea 46RDOAG Brassica oleracea cDNA 5', mRNA s AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GCTTGTGGAGAAGTCCACCATCATCCAGATTCTTGAGCAAGAGAAGGAAGGGCTCGAGCAGTTCACCGCCACCGACGGGTACGATTACAGCGGTGGAAGCAACGTGCTGAAGGTCCTTGGCTACTTCAGCATGGTCGGTCTTTTGCGCGTTCACTGCCTTCTAGGAGATTACCACACCGGTCTCAAGTGGCTGCAGCCCATTGACATCACTCAGCAAGGTGTTTACATCAGCGTCATTGGTTGCCATATCGCGACTATCTATCACTACGGATTCGCCAACCTCATGTTGAGAAGGTACGTGGATGCGGTCAGCGAGTTCAACAAGATCCTCCTCTACATCTACAAGACGAAGCAGTACCACCAGAAGTCGCCTCAGTACGAGCAGTTGCTGAAGAAGAACGAGCAGATGTACGCTTTGCTCGCGGTCTGCCTCTCCCCCTGCCCTCAGACGAAGCTCGTGGACGAGTCTGTCAACTCTCAGCTGCGGGAGAAGTACGGTGAGAAGATGATGAGGATGCAGAGGTGCGACGACGAGGAGTT | |||||||||
gi|308716028|gb|DK463613.1|DK463613 DK463613 full-length kale cDNA library (flowers) Brassica oleracea var. acephala cDNA clone AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GACGTCTCTCTTCTCATTATCCTTCAGCTCACCAGCGAAAGAGAGAAGAAGGTAGATTAGATTCTCCAAAAACATGACGACCACCTACGACTTCGAAGACACTCCGTCAAACTACGACGACGTCCAGCGTCAGGGCGGCCAGGACGCCGTCTACGACCCGAACTTCGTGCCGGACTCCGTTAAGTCCTTCGTGGTTCACATGTACAGACACATCAGGGAGAAGAACGTCTACGAGATCCACCAGATGTGCGAGACGTCGTTCCAGACCTTGTCGGAGCGGCTCTTCAAGGACACCCCTTGGCCTTCCGTGGAAGCGATCGCTCCTTATGTGGACAACGATCACGTCTTCTGTCTTTTGTACCGTGAGATGTGGTTCCGTCACTTGTACGCGAGGCTGTCGCCGACGCTGAAGCAGAGGATTGATTCCTATGATAACTACTGCAGCCTGTTTCAGGTGGTGGCACGGTGTAGTGAACATGCAGCTACCAAACCAGTGGCTGTGGGACATGGTGGATGAGTTTGTCTACCAGTTCCAAAGCTTCTGTCAGTACAGAGCCAAGATGAAGAACAAAACAGAGCAGGAGATTGCATTGCTCAAACAGAACGACAAGGCGTGGAATGTGTACGGCGTGCTCAACTTCTTGCAAGCGCTTGTGGAGAAGTCCACCATCATCCAGATTCTTGAGCAAGAGAAGGAAGGGCTCGAGCAGTTCACCGCCACCGACGGGTACGATTACAGCGGTGGAAGTAACGTGCTGAAGGTCCTTGGCTACTTCAGCATGGTCGGTCTTTTGCGCGTTCACTGCCTTCTAGGAGATTACCACACCGGTCTCAAGTGGCTGCAGCCCATTGACATCACTCAGCAAGGTGTTTACAT | |||||||||
gi|308682678|gb|DK519853.1|DK519853 DK519853 full-length kale cDNA library (flowers) Brassica oleracea var. acephala cDNA clone AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): CTTTTTTTTTTTTTTTGAACCATCATGAAAACTTATGGTGAACAAGAAAAGAGGGAGTTATTAGTACAAAATGGATAAACAGATAATACAACGCTTTTATAGCACTTTAGAGAGCTCAATGCTGGATTGTAAATGTAACCGTTTTCTATTCCAGAGACAACAACAATACACAACACAATCTTGACATAGCAGACGGATTCAGGATGATCAAGATTCTCAATCATGGCGCCAAGGCAAGTGCAATCCAATCCATCTTAAATGCCATTCAGGTTCAGGGGAACTCTATTGTAAATCCACTACTTGTAGGCTTCACATTCACAGGTCCAAAGCCATCTGAATCTGAATCCATTTCTCTGTAATCATTCCACTTCCTAGGAGAATCCTCCTCATCTGGTCCACTCATTGCCGGAGGCACATAGAGCTCTGAAACTGGTACCGGAAGAGGATCTTCCTTGAAATATTTATCACTCAACAACTCCACAGCAGTAGCTCTACTAGCTGGATCATAACAGATAAGCTTCTTGAGCAGCGCTATCACTTCCCCCGAATGGTTAGGAAGACATCCTTCTACACCAAGAGGAGACTCTACTTCAGCAAACGAGATCGACTTATAATCAGGAAGATCAACACAGCCTGGCCAAACCTCTTCGTTCAAGTTCCCCAGCACGTTGGTCACTCTGCTGATCTGATCAATATCCGAAACTCCAGGG | |||||||||
gi|122042249|gb|EH431114.1|EH431114 OL9987R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabr AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GCACGCGTCCGGGCAGCTCCAGAAGCTGGTAGTGAGCTACTGTAATTGGGGTGGCAGCAGCAGAGGCATAAGAGCCTTTATGGAATCAGAGTTACCTGCTCTGATCGAGAAGAATCCGCAGCTCGAAGTGGTAACGGAGCTCTCAAGGGGACAACATCCTTACCTCAAGGGCATTTACAGGAATAGAAATGAAAGAGTGGTGTGTGTTAAGAACATGGATCCTGATCAAGTGCTTTTGAATGCAACGAGGCTTAGGAACTCTCTTGGAAGGAAAGTGGTGAAGCTGCGGACTAGGCATGTGACCAAACATCCCAGTGTTCAAGGCACTTGGACAACCGCTGTCAAGTTCTGACAACCTTTGCGGGTCTTTTGTTCTTCTTCTTATTCGTTGCTGTAATGTTGCAATATCAGGATTCTTCCTTTGTTACCAATATTTGCAATACCAAGTTGTTTCCACTACTTGTTCTCTCTGGTTCGTTCCTTTTTTTCTTACAACAATGTTCTGTCTTGTTTTGGATCCGGTTAATGTCTGGGAAACATGATCCTCTTGTGTTTTGTCCGTTTCAGTGTTATTTTCTTCTCTGGG | |||||||||
gi|308676889|gb|DK483992.1|DK483992 DK483992 full-length kale cDNA library (capsules) Brassica oleracea var. acephala cDNA clone AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GGTCTCTCTTCTCATTATCCTTCAGCTCACCAGCGAAAGAGAGAAGAAGGTAGATTAGATTCTCCAAAAACATGACGACCACCTACGACTTCGAAGACACTCCGTCAAACTACGACGACGTCCAGCGTCAGGGCGGCCAGGACGCCGTCTACGACCCGAACTTCGTGCCGGACTCCGTTAAGTCCTTCGTGGTTCACATGTACAGACACATCAGGGAGAAGAACGTCTACGAGATCCACCAGATGTGCGAGACGTCGTTCCAGACCTTGTCGGAGCGGCTCTTCAAGGACACCCCTTGGCCTTCCGTGGAAGCGATCGCTCCTTATGTGGACAACGATCACGTCTTCTGTCTTTTGTACCGTGAGATGTGGTTCCGTCACTTGTACGCGAGGCTGTCGCCGACGCTGAAGCAGAGGATTGATTCCTATGATAACTACTGCAGCCTGTTTCAGGTGGTGTTGCACGGTGTAGTGAACATGCAGCTACCAAACCAGTGGCTGTGGGACATGGTGGATGAGTTTGTCTACCAGTTCCAAAGCTTCTGTCAGTACAGAGCCAAGATGAAGAACAAAACAGAGCAGGAGATTGCATTGCTCAAACAGAACGACAAGGCGTGGAATGTGTACGGCGTGCTCAACTTCTTGCAAGCGCTTGTGGAGAAGTCCACCATCATCCAGATTCTTGAGCAAGAGAAGAAGGCTCGAGCAGTTCACCGCCACCGACGGGTACGATTACAGCGGTGGAAGTAACGTGCTGAAGGTCCTTGGCTACTTCAGCATGGTCGGTCTTTTGCGC | |||||||||
gi|150918586|gb|ES949047.1|ES949047 49RDOAT_UP_071_D11_27JAN2006_089 Brassica oleracea 49RDOAT Brassica oleracea cDNA 5', mRNA s AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): AAGAGCCTTTATGGAATCAGAGTTACCTGCTCTGATCGAGAAGAATCCGCAGCTCGAAGTGGTGACGGAACTCTCAAGGGGACAACATCCTTACCTCAAGGGCATTTACAGGAATAGAAATGAAAGAGTGGTGTGTGTTAAGAACATGGATCCTGATCAAGTGCTTTTGAATGCAACGAGGCTTAGGAACTCTCTTGGAAGGAAAGTGGTGAAGCTGCGGACTAGGCATGTGACCAAACATCCCAGTGTTCAAGGCACTTGGACAACCGCTGTCAAGTTCTGACAACCTTTGCGGGTCTTTTGTTCTTCTTCTTATTCGTTGCTGTAATGTTGCAATATCAGGATTCTTCCTTTGTTACCAATATTTACAATACCAAGTTGTTTCCACTACTTGTTCTCTCTGGTTCGTTCCTTTTTTTCTTACAACAATGTTCTGTCTTGTTTTGGATCCGGTTA | |||||||||
gi|308664559|gb|DK521542.1|DK521542 DK521542 full-length kale cDNA library (capsules) Brassica oleracea var. acephala cDNA clone AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): CGTAGCCTTATTATATCACTCATTGAACCATCATGAAAACTTATGGTGAACAAGAAAAGAGGGAGTTATTAGTACAAAATGGATAAACAGATAATACAACGCTTTTATAGCACTTTAGAGAGCTCAATGCTGGATTGTAAATGTAACCGTTTTCTATTCCAGAGACAACAACAATACACAACACAATCTTGACACAGCAGACGGATTCAGGATGATCAAGATTCTCAATCATGGCGCCAAGGCAAGTGCAATCCAATCCATCTTAAATGCCATTCAGGTTCAGGGGAACTCTATTGTAAATCCACTACTTGTAGGCTTCACATTCACAGGTCCAAAGCCATCTGAATCTGAATCCATTTCTCTGTAATCATTCCACTTCCTAGGAGAATCCTCCTCATCTGGTCCACTCATTGCCGGAGGCACATAGAGCTCTGAAACTGGTACCGGAAGAGGATCTTCCTTGAAATATTTATCACTCAACAACTCCACAGCAGTAGCTCTACTAGCTGGATCATAACAGATAAGCTTCTTGAGCAGCGCTATCACTTCCCCCGAATGGTTAGGAAGACATCCTTCTACACCAAGAGGAGACTCTACTTCAGCAAACGAGATCGACTTATAATCAGGAAGATCAACACAGCCTGGCCAAACCTCTTCGTTCAAGTTCCCCAGCACGTTGGTCACTCTGCTGATTTGATCAATATCCGAAACTCCAGGGAACAAAGGCTCCAGAGACAAGAGCTCCGCAAAGACGCAACCAAGC | |||||||||
gi|119425934|gb|DY014051.1|DY014051 48RDOAM_UP_006_D03_12AUG2004_025 O. Alba 48RDOAM Brassica oleracea cDNA 5', mRNA sequence AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GAACTATCTATCACTGTTTCTTCTCTGAACAAACTCTCTCTCTCTCTCTCTCTTTAGCTTCTTGTGTGACGCACACTCGTGAGAAATGGCCGCCGCAGTATCACCAGTCTTGAGCTTGAACGGGTCGGGAGCAGTAGCTGCTTCAGTCCCAGCTACAACCTTCCTGGGAAAGAAAGTTGTAACATCATCAAGATTCTCCCAAAGCAACAAGAAGAGCAACGGATCATCATTCAAGGTGGTTGCTGTGAAAGAAGACAAACAAACCGATGGAGACAGATGGAGGGGACTTGCCTACGACACATCTGATGACCAACAAGACATCACCAGAGGCAAAGGTATGGTTGACTCTGTCTTCCAAGCTCCTATGGGAACCGGAACTCACAACGCCGTGCTTAGCTCCTATGAGTACATCAGCCAGGGTCTTAAGCAGTACAACTTGGACAACATGATCGATGGGCTTTACATTGCTCCGGCTTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCTTGACCTTGCCTACATCAAGGTTCCACTTATTTTGGGGATTTGGGGAGGCAAAGGTCAAGGTAAATCCTTCCAGTGGGAGCTTGTCAT | |||||||||
gi|308709379|gb|DK475529.1|DK475529 DK475529 full-length kale cDNA library (flowers) Brassica oleracea var. acephala cDNA clone AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GACGTCTCTCTTCTCATTATCCTTCAGCTCACCAGCGAAAGAGAGAAGAAGGTAGATTAGATTCTCCAAAAACATGACGACCACCTACGACTTCGAAGACACTCCGTCAAACTACGACGACGTCCAGCGTCAGGGCGGCCAGGACGCCGTCTACGACCCGAACTTCGTGCCGGACTCCGTTAAGTCCTTCGTGGTTCACATGTACAGACACATCAGGGAGAAGAACGTCTACGAGATCCACCAGATGTGCGAGACGTCGTTCCAGACCTTGTCGGAGCGGCTCTTCAAGGACACCCCTTGGCCTTCCGTGGAAGCGATCGCTCCTTATGTGGACAACGATCACGTCTTCTGTCTTTTGTACCGTGAGATGTGGTTCCGTCACTTGTACGCGAGGCTGTCGCCGACGCTGAAGCAGAGGATTGATTCCTATGATAACTACTGCAGCCTGTTTCAGGTGGTGTTGCACGGTGTAGTGAACATGCAGCTACCAAACCAGTGGCTGTGGGACATGGTGGATGAGTTTGTCTACCAGTTCCAAAGCTTCTGTCAGTACAGAGCCAAGATGAAGAACAAAACAGAGCAGGAGATTGCATTGCTCAAACAGAACGACAAGGCGTGGAATGTGTACGGCGTGCTCAACTTCTTGCAAGCGCTTGTGGAGAAGTCCACCATCATCCAGATTCTTGAGCAAGAGAAGGAAGGCTCGAGCAGTTCACCGCCACCGACGGGTACGATTACAGCGGTGGAAGTAACGTGCTGAAGGTCCTTGGCTACTTCAGCATGGTCGGTCTTTTGCGCGTTCACTGCCTTCTAGGAGATTACCACACCGGTCTCAAGT | |||||||||
gi|150134728|gb|EE535691.1|EE535691 49RDOAT_UP_027_F12_04OCT2004_086 O. Alba 49RDOAT Brassica oleracea cDNA 5', mRNA sequence AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GTGCGAGACGTCGTTCCAGACCTTGTCGGAGCGGCTCTTCAAGGACACCCCTTGGCCTTCCGTGGAAGCGATCGCTCCTTATGTGGACAACGATCACGTCTTCTGTCTTTTGTACCGTGAGATGTGGTTCAGACACTTGTACGCGAGGCTGTCGCCGACGCTGAAGCAGAGGATTGATTCCTATGATAACTACTGCAGCCTGTTTCAGGTGGTGTTGCACGGTGTAGTGAACATGCAGCTACCAAACCAGTGGCTGTGGGACATGGTGGATGAGTTTGTCTACCAGTTCCAAAGCTTCTGTCAGTACAGAGCCAAGATGAAGAACAAAACAGAGCAGGAGATTGCATTGCTCAAACAGAACGACAAGGCGTGGAATGTGTACGGCGTGCTCAACTTCTTGCAAGCGCTTGTGGAGAAGTCCACCATCATCCAGATTCTTGAGCAGGAGAAGGAAGGGCTCGAGCAGTTCACCGCCACCGACGGGTACGATTACAGCGGTGGAAGCAACGTGCTG | |||||||||
gi|75974140|gb|AM058360.1|AM058360 AM058360 AAFC_WHRI_BoE01a Brassica oleracea var. alboglabra cDNA clone AAFC_WHRI_BoE01a007L23 AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): TTTGTGAAGATAATAAGAACACAGTGTTTATTGTTAGTGGGAGAGGACCAGAGTCTCTGAGCGAGTGGTTGTCTCCTTGTGAGAATCTTGGTATAGCTGCGGAACATGGATACTTCATAAGGTGGAATAGCAAGAAAGAGTGGGAGACTTGTTACGCGTCTACGGGTACAGAGTGGAAGGCTATGGTGGAGCCTGTTATGAGATCATACATGGAGGCAACAGATGGGTCAAGTATAGAGTTTAAAGAGAGTGCTTTGGTATGGCATCATCAAGATGCTGATCCAGACTTTGGATCTTGCCAAGCTAAGGAGCTTCTTGATCACCTAGAGAGTGTGCTTGCGAATGAGCCTGTTGTTGTCAAGAGAGGTCAACACATTGTTGAAGTAAAACCACAGGGTGTGAGCAAAGGTCTAGCTGCGGAGAAGGTAATCCGGGAAATGGTTGAACGTGGGGAGCCACCAGAGATGGTGATATGCATAGGAGATGATAGGTCTGACGAGGATATGTTTGNNNGTATGTTGAGTACGGTGACAAATCCAGNGCTTCTG | |||||||||