| mature miRNA: AGAATCTTGATGATGCTGCAT species: Lactuca sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|83989079|gb|DW135188.1|DW135188 CLSY2701.b1_I03.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSY2701, mRNA sequence AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): AGTACTGGTTTCCCTCGAGGCAGTTCAAATACCGAGGTGTTACATTGCACAAATGTGGCCGATGGGAAGCTCGAATGGGCCAATTCTTGGGCAAAAAGTATGTGTATCTGGGTCTTTTTGACACTGAAGTTGAAGCTGCCAGGGCTTATGATAAAGCTGCAATTAAATGCAACGGGAAGGATGCTGTTACAAATTTTGATTCCAGTACATATGAAAACGAGCTCAACTCCACGGAATGCACGAACAATAACGATAAGATCATCAACGAGACTTCATCAGATCATAATCTTGATTTGAGCTTAGGAGGTGGTTCAACCTCAAATAAGCCAAGGAACATAGAATTTAGAGATTATCACCAAATTCCATCTAACTCCATACAATTTGGATTTAGTAGACCTCCGGCATCCGGGTCGGGTTGGTTTGATGGAGGGAGAAGAGAAGGGTACAATGAAACTGAAACATTCCAGCTACTTAGTCAGACGCACCTTCAATCTCCACCCGGATCATTTATGGGTTACAGTGAAGGGCGTGGATACGGGCATTTTATTCGACCCGCTAACCCGACTATGCTTCATACGTTCAACCCTACTTCTTTCAACTCACTGACTAATCATCAAATGCAGTTTACGAGCAGCACCGCACACGGCGGAGGAAGTAATCCATCTCCACATCAAATGTATGCAAATAGTGCTGCAGCATCATCAGGATTCCCCCAGCAAAGATTTCACTTCCGACAACCACCTTAAAATCCTCGGACGATGGAATTGGGCTCCAGGAAGAAAACCTAGTCAGGACAAAAGAACACAACTTTTTCTGTGTTAACAAATGGATCTCCACATGATGTTTTTTTAACCCCTATGTCTTGACCATGAAATGAAGGTCGATTTTGTGTTAATTTTTTTTAGTATAATCGAAGACGTTGACTATTCATAGGTGACATGCTTAGCTAGGGTTAT | |||||||||
gi|90509791|gb|DY971649.1|DY971649 CLSM5094.b1_L01.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM5094, mRNA sequence AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): CGCCTGATCGATTTTGTTTAATCTGATGTTCTGACTTCGTTTATTTTGATTTCTGTTGCATTTGGTTTTCGTATCCTAACTGTCTCATTATGAATTTCAAATTTCTGCTGTGCTATTTGATTTCTGCTGTAATTCACTTTCTTACACCGCACATGCCAACAGGTTACAGAACAGGAGGTACTCTCGAAGGGCCCAATTTTAATTTTTTTGCCCCGGCCCCCAAATCCTCACAAAGATCAGATTTCCCACACTAATCTCAAATGATGAGTGTTTTGGACCACCACGAAGGCGCCGATGAATCATCCCTGGTGTCTTCGATGTAGTGGGTTCATAACCTTCTCCGGTCTATCCGATCAGATCTCAATCTTGAATCTGAAGCCAAGCTGGAAACCTCATCATGGCTCCATTAGCCCTACAGTTCACAGGTTGGTGCAGTATCGATTTTTAAAGATGCTCTGTGGCTTATCTTACTAGAAAACTGTGTGATTGATGAAACCTCTGGTTCTGAACAGGTGAATTATGAAGACTTTTGCCGAATTGCTTCTCTATGTACTGAACAAGTTGAGTCAAAGTGTTATCGTTTCTTCCGCCCTTCAGATTTTCTGAGATTTCGAACAGATGACTCGTGAAGGATTCCCCTTCTTCCTTTTTATCTGCTACATAATGCGCACGGTCTCTCTTACACTAATCCCAACTGATATGATTGCAGCTTGATCAGGATTCTGATGGTTTCCTTCACCT | |||||||||
gi|22245395|gb|BQ859930.1|BQ859930 QGC14G08.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC14G08, mRNA sequence AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GACCACCAGGAGCAGGTCCCATTGCAATAGGTCTCATCTGTGAAAACTGTGCCTGCAATCTTGCCCTTCTGTCTTCTTTGCGTTGAGCAAGTGCAACATAAAGAGGCTTGCTAGCAATCATCTTCCCATTCATCTCAGCCAGAGCTCTAGAAGCTTCCTCAGAAGTGGAAAATGCAACAAAGCCTGATCCTTTGCTAGCTCCATTAGGATCACGCATGACCTTGCAAGAAGATATAGTACCAAAAGGAGTAAAGAACTCCTTGAGGCTTTCATCAGAAACGGTATCATCAAGATTCTTGATATAAAGATTCAGCCCTTGTGATTTGTCAACAGCTTCCTTCATTGTCTGTTCAAATCGTTGTTTCAGTTCCTGTTCTCTTTCATTCTTTTTCTGGGCTTTTCCAACATACCATTCTTTATCATCAAACTTCTGTCCATTAAGACCATCTACAGCTTTTGCGGCATCTTCAGCATTCTCAAAGTTAACAAAACCAAAGCATTTGGAGTTGCCTTCTGCATCCCTCATCACAACTGCACTTGTGATTGTTCCGTATTCACTGAATGCTTTGTTTAAGTCATCATCTGTAGTTGATTCAGACAGGTTCTTAACAAAGACATTAGTGAATTTGCTCTTGTCAACAGCCAATTCTCCTT | |||||||||
gi|22246199|gb|BQ860734.1|BQ860734 QGC16I18.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC16I18, mRNA sequence AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GACCACCAGGAGCAGGTGCCATTGCAATAGGTCTCATCTGTGAAAACTGTGCCTGCAATCTTGCCCTTCTGTCTTCTTTGCGTTGAGCAAGTGCAACATAAAGAGGCTTGCTAGCAATCATCTTCCCATTCATCTCAGTCAGAGCTCTAGAAGCTTCCTCAGAAGTGGAAAATGCAACAAAGCCTGATCCTTTGCTAGTTCCATTAGGATCACGCATAACCTTGCAAGAAGTTATAGTACCAAAAGGAGTAAAGAACTCCTTGAGGCTTTCATCAGAAATGGTATCATCAAGATTCTTGATATAAAGATTCAGCCCTTGTGATTTGTCAACAGCTTCCTTCATTGTCTGTTCAAATCGTTGTTTCAGTTCCTGTTCTCTTTCATTCTTTTTCTGGGCTTTTCCAACATACCATTCTTTATCATCAAACTTCTGTCCATTAAGACCATCTACAGCTTTTGCAGCATCTTCAGCATTTTCAAAGTTGACAAAACCAAAGCATTTGGAGTTGCCTTCTGCATCCCTCATCACAACTGCACTTGTGATTGTTCCGTATTCACTGAATGCTTTGTTTAAGTCATCATCTGTTGTTGATTCAGACAGGTTCTTAACAAAGACATTAGTGAATTTGCTCTTGTCAACAGCCAATTCTCTTTCTTGCTTA | |||||||||
gi|90518888|gb|DY980746.1|DY980746 CLSS2730.b1_C11.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSS2730, mRNA sequence AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): CGCGGGGGATTGTGGGAACAAGTTTATTTAGGCGGATTTGACACTGCCCTGGCTGCAGCTAGAGCCTATGATCGAGCTGCCATCAAGTTCAGGGGAATTGATGCGGATATCAACTTTCATATAAACGAATATGAGGAAGATATGGCACAGGTAAAGAATTTGTCAAAAGAAGAATTTATTCATATACTCCGTAGACAGAGCACAGGATTCTCACGAGGAAGTTCAAAATACCGAGGAGTAACCCTCCATAAATGTGGGAGATGGGAGGCTCGCATGGGTCAGCTTCTTGGAAAAAAGTATGTTTACCTTGGATTATTCGACAACGAAGTAGAAGCTGCAAGGTTGTTGTAATTTTATAATTGACAATTAACATGTTAACCCACCCATATGAACGAAGGCATCATTCAACAACATTTGCAATTTATATTGTCTGAATTCAGGGCTTATGACAAAGCTGCCATTAAATGTAACGGCAAGGAAGCTGTCACCAACTTTGAGCCACGCATCTATGGAGCGGATATAAGCTTGGAAGCCATGGATGAAGAAGCTAGTGGTCACAATCTTGATCTCAACCTCGGGATTTCTCCCACTAAAGATAGTCCAAGGGCAAATTTACAGGCACAGACACAAGCTCAAGCTCCGTTATTATGGCCTAGTAACATGTATTATGGTTTTACACCAAACAATGAGGAAAAAGCGATAGGAATGGCATCTGCGAATAATATTCAAGGGCTCTCAGCATGGCAAATGCAAATGTTGGGTGGCAATTATGGCATGGGTGTGACATTTCCAATTCCGGTTTCTTCTTCTATTGCAGCATCATCAGGATTCTCTTCTACTACTACTACTGTTTTCTCGAATGGGGGTAGTATCCAACAGCCAACTAACATGGCCAGGGGCACTTCTTCTTCGATATACTTTCAGTAACCAGATTGGTTGATAAAGCAAGCCCATGTGACTGCTTTGCTTGA | |||||||||
gi|83988156|gb|DW134265.1|DW134265 CLSY1751.b1_M06.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSY1751, mRNA sequence AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): TACTCCTCATCTCTATCCTCTCCTTGAAGATCTAATTCATGTTTTTTTCCTACCAAACTCAGATCTCCCTCCGGCCGGTTGATTTCAGACTTTTATCTGTTTTCCGGTATCCGAAATATCTAACGTTTACATATCTGCTTATGCAGTTGATTATATTGTTTTGATGGTCTCTTACTTAGGTTTCTGATTTTGGTTTCGATCAAATCTACTCTCTCTTTTCGTATTCGTAGATGTAACCGCCTAAGTCTTCTGGATCATCCGTCTTAATTTCTTTTTCTGAACATCAGATCATCGGTTTGTTAGGTCAGAATCTGAACACATGATCATGTGGATCATGTCCCTGCGTTGCCTCGGAAATGAAAAATCCGATCAAAACCGCGCATTGGATTCCGACCAATAACAAAGCGTATGCGAGATCGGAGAAGAAAAATAGGGTTTTGTTCTTTTTATATTTTTATATTTTTTTTGTTTGAAAAGGAGTTGCTATTGGAGTAGATCTTTTGGTTTTATGTGGTACCTCTCCTTAGTGACTTTAGAATTCGACCAATCTTGACGTGCCACATCACATCTTCGCTCGTGGCCTTAATTATTAAGAGTGACCCCATGAAGACCCCCTCCGAAGTTTGATTTTTCAGCCATTTTTTCATCTGAAAGCTCTCTAATGAAAAAAAAGACATACTCTTATTCTTCTTCTTCTTCAAGGGTTACTATCAGCCGCCAAGGGATTTTTCCGATCAAACCCTAAAGTCGTTGTTTTCCGGCGTGGCATCATCAAGATTCACGTACAAAAGCAAAAAGCAAAAGCTTTTTGAGGATGAGAATCTTGATGATGCTGCATCGGCAATAAATGGCTGTGCTATAGGTAGATGGCGTCAAGAAGTGTACTCTCTGCATTGTAGATGGTATCGGTAGCTGAC | |||||||||
gi|22242374|gb|BQ856909.1|BQ856909 QGB6B10.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB6B10, mRNA sequence AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GAAATTGGAAGGGATAGAAATTGCTGTAAAGAGACACTCAAGAAAATCAAAACAAGGACTAGACGAGTTTCAGAATGAAGTTAAATGTATTGCTAAACTTCAACACCGAAACCTTGTGAGGCTTTTAGGATGTTGCATTGAAGAAGATGAAAGGATGTTGATCTATGAATACATGCCCAATAAAAGCTTGAACTCTTTTATTTTTGATGAAAGAAAAAGAAAGACACTTGATTGGTCAAAACGCTACACTATTATAACTGGAATTGCAAGGGGTCTTCTGTATCTTCATCAAGATTCTAGATTAAGAATCATTCATAGGGATTTAAAAGCTAGCAACATATTGTTAGATAAAGATATGAATCCAAGAATTTCAGACTTTGGTTTGGCAAGAAGTATGGAAGGAAGTAAAACAGAAGCAAATACAAGAAGAGTAATGGGAACATAGTAAGAACTTATATAAACCGATAAACCTTTAATCTTTAATTACACATAATAAAAAACTAATTGATTTTTGTACATTTTATTTCTTTTAGTGGCTACATGGCACCAGAGTACACCATTGATGGGATTTACTCCACTANATCTGATGTCTTCAGCTTTGGTGTATTGGTGTTAGAGATAATAAACGGAAAGAAAAATATAGGAGATCTCGTCATGCAAATCATGATCTT | |||||||||