| mature miRNA: AGAATCTTGATGATGCTGCAT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73889686|gb|DT492424.1|DT492424 WS02550.C21_L02 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02550_L02 3', mRNA sequence AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GTTTCAACAGCTCTCGTGTAGTGACATAGAAGAAAGAGAAAGGAAAAGAAAACGAAAGAGGAAGGAAATTTCTCTCCGTGTGATTTGTACAGAAACGGCAATGAACATAACTCACCAAATTATCAAACTCAGCATCCAAGCAGCAGCAATGGAGGCCGAATTGGAAGTGATCTTTCTCTCTCTCAATATGAGCTTCATTATAACCATCATTATCAGCAATGGCAAGCAGGTCCTCCCCGGTTTGCAAATGCTGCAGCATCATCAGGATTCCAACAGCAGATTAGGACTCCACAAAACTGGCTGCAGAAAAATGGGTTCAACTCTCTCATGAGACCTTCTTAACCCATACATAAAGTAGCCGTTCCATCTTCCTTGCTATGCAATCTCAATCCCCACCTTGTTTGCTAGCTGGGTAAAACATGTAAAGAGCAAGGCTTTTAACTACGAGGCAGGTTGTTTTTCAATCCACTGTCCTCCCAAGCCCAGAGAGAACCACCACCAAGAAAATCACGATATAGGGGCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73888295|gb|DT491033.1|DT491033 WS02546.C21.1_J24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02546_J24 3', mRNA sequence AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GGACAATTTGGGAGATGGCCATTGTAGTTTTGGTGGTTGTGAAATACCCATCAAAGAGAGACAAGCGAAGGCTGAGGGCACTGCTGCTGCACGTATGGGTTTAGAGACGCTTCATGGTCTACCAATAGCATCGAGGAACCTTCCAACATGGTCTGGCATGTTCCCTGGTTTAGCATCAAGCTATGAGGAAAGGACTCCGGAGAAGAGGTTTGAAGCAGTTTCTCCACCGAGATTCTCAAGCTGGCCATGGCAGATAAATGGCAGCAACAGTGTTGCTGCTACAATGCCACAGCTCTGTGTTGCAGCATCATCAGGATTCTCTTCTTCGACCAAAACTGTTCCTTCAGCTACTCTTCCATTCAACCAACAGAACCATTTCGCCAACAACAACCCGCGACTTGCAGCCTTCACCACATCTGCCACCAACCCCTCGTTTTACTACTCTTATACGAGCTAATTAACGTTAACACCTTGAGTGCATTTGCCATTGTGCTAAATTAAGCGAGCAAGGGAACTGAATCAATGGAGCCAAAAAA | |||||||||