miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: AGAATCTTGATGATGCTGCAT
species: Populus trichocarpa x Populus deltoides
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|46838444|gb|CN520075.1|CN520075 GQ0108.B3_B14 GQ010 Populus trichocarpa x Populus deltoides cDNA clone GQ0108_B14 5', mRNA se 

AGAATCTTGATGATGCTGCAT
 |||||.|||||||||||||
CCTTAGGACTACTACGACGTC

EST sequence (targeted fragment marked with yellow):
AGTGTGGAAGATGGGAAGCTCGAATGGGCCAGTTCTTAGGCAAAAAGTATGTTTATTTGGGCTTGTTTGATACTGAGATTGAAGCTGCAAGGGCCTATGACAAAGCTGCAATCAAGTGCAATGGCAAGGAGGCAGTAACCAACTTTGATCCCAGCATTTATGAAAATGAGCTTAGCTCAAATGGCAATGCTGCGGATCATAATCTTGATTTGAGCTTGGGCAATCCAGCTTCGAAGCAAAACAGTATAGAATTTGGTCAGGATAGGCACAATGTTGCAATGGAGCAACATTCAGCAACCATGCCATTTGAACCTAATCGGCAAAATCGGGGGCATAGACCCAAGCAGCTTAACCTTTGTACAAGTGACAATGATGGACATGGAAGAGATGGGTATGGAGAGACTGAAACGACTCAGCTTCTTAGCAAAATCCACATTCAATCTCCAGCATCACTCAAGTCCAGTGAAATGCCAAGATATGAGCAGTTCAGGAGATCACTCGGAGATAATCAGATGCATCCTTTTCTTCCCCCACAGTATAACTCACCAAATTATCAAATTCAGCATCCAAGCAGCAGCAATGGAGGCCGAATTGGAAGTGATCTTTCTCTCTCTCCATCTGAGCTTCATTATAACCATCATTATCAGCAATGGCAAGCAGGTCCTCCCCGGTTTGCAAATGCTGCAGCATCATCAGGATTCCNNNAGCAGNTTANNACTCCNNNNNACTNNNNGCANNNNNNNGGGNNCANNNNTCTCATG


gi|73934767|gb|DT518077.1|DT518077 WS02436.B21_C06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02436_C0 

AGAATCTTGATGATGCTGCAT
||||.|.||||||. || |||
TCTTGGGACTACTGGGAAGTA

EST sequence (targeted fragment marked with yellow):
GGATTCAAGCAAGTACTAGGATAATTAAACCTAAACATGCTACTGAACATATTTTGTAGTATTACAAGCAAGGAGCATTCATTCCAGGGCAATTAGCAATAGGGCAATGATAGGCTGTGCTATTTCCACAAATCGAAGGTGAAAATCTACAAATGCTAAGTGAAAGAATCAATGACTGTTACAGATTAGCAGCTCTTAAAACTCCCAAATCATGTGCTCCCAGGAGCATCACTTCCTACAGCAGGCTTGCGATTCAAGTAACGAATAACAGCATCTTCAACCCATGGTTGGTTAAAGAAGTCCGAGCGGCGCTCTTTCTCAGCATTTCTGCTAGCTTCTCCAGCTACCAGCCTCAAATCCTTGCTTTGAGATTCAATCAGAGCATTGACAAATTCCACAGGTGATTGACTAAATCCAAGGAAGAATGCCCGTCTCCTTCGATGTTCATGAATTTTCCTTATAGCAGTACATATTGCCTCATCACAGGTATCAATCTCTTTATTCTTCTCGGCATTTGCCAACAAAGCAAACAATTCCCTCTGTATTGGAAATGGCACATCCACCAGCACATCATAGCAGACAGTTCCAGCTGGACTATTCCCTGAAAGCTTAATTTTATGCTCCAAATGTATCGGCTGTGGAGGAGATAAATGCGGAGATATCCTCTGTGAAACCATCGTGAATTTCATCTTTGATTCTCCAAATACTTTCTGAAGAGGTGCATCGCAAATGAAAAATGAAGGGTCATCAGGGTTCTGCAGTTTCCTAGCCTTCACATAATGCCAAATTGCAACTATTATTCTAGGACGGGTTTCAACCTCTATACCAAGAACTTCCATCAAAGACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAACAAAAAAAAAAAAAAAAAA


gi|52531832|gb|CV278857.1|CV278857 WS0147.B21_K09 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides cDNA clone WS0147_K09 3', 

AGAATCTTGATGATGCTGCAT
 |||||||||||||||| ||.
ACTTAGAACTACTACGAGGTG

EST sequence (targeted fragment marked with yellow):
TCAACCAAGCTTGCACTCTTCCTCTCATTCTAGTTTTTTTTTTTAAATAATATTCTTATAAAGGTTTGATGAGCTGATGTAGCTAAAAGAAGTGAAAAAACCAAATGGGTTCTCTTTCTTTTTATGTGATCTTCGCCGGAATCTGACATGAGGTGGTACTTGCTATATGTTAGTCTCACCACACACAACCAGAGGGAGTGTGTTTTTGTCAGAATCTCGCCGGATAAATAAATCTGATCCACTTAACTAAAAATCTTTGATTTACCAAAGTACTGAAACTCGTTAGTTCTTGATTCCATTTATTAGATTTTTTTTTCTTTCTTTCTTCTCATCTGATATAAAAAAATATTATTATATTTTTAATGTTGAAAACGGGTTTTGTCTTGTTATAAAGTTCTGAGTTAAACAAGGTTGTAGGATTCTTTCTCGGGCATCCCCTTCACGTATTCCCTTTTGGCCTTAACCAATGGCAACATGCCACATCAGCTCCTTGCTCGTGGGTTTGTTGGTTTGCATATAGAGGAGGTAAAAAGATGGGGCATGGAATTGAAGGCTAAAGGGGTTCTTGTGCATGGAAATATTGACAATCGTTGTTTGCGGGTGGAGCATCATCAAGATTCACATGCAAATGCACGGCCGGTGATGTTAAGAGTTAAATCTTTCTTTGTTTCTGTTCATCTGCCAAAGTTCTTTGGAAGTGAGAATCTTGATGATGCTGCATCGGCAATAAACGACTATACAACACAAAAGGACTTGCAAAAAAAAA


gi|52510479|gb|CV257504.1|CV257504 WS0246.B21_N15 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS0246_N15 

AGAATCTTGATGATGCTGCAT
|.||||.|||||||||||||
TTTTAGGACTACTACGACGTT

EST sequence (targeted fragment marked with yellow):
GGTGGTGGAGGGCAGTACTGCTGCAGCACATATGGGCTTGCAAACCCTTCATGGTTCACCAATGGCATCAAAGAACCTTCCAGCATGGTCTGGCATATACCCTGGTTTATTATCAAGCTCCGAGGAAAGGACTCCAGAGAAGAAGGTTGAAGCTGTTTTTTCACCGAGATTCTCAAGCTGGCCGTGGTTAATAAATGGCAGCACCAATGTTGTTGCTACAATGTCACAGCTTTTTGTTGCAGCATCATCAGGATTTTTTTGGACGATAACTGCCTTTTCAGGGACCCTTCCATTCAACCAACAGAACCATTTCGCCAGCAACCTGGGTCTTGTTGCATCCACCACTATTTTCCCCCAACCCCTTTTTTTATTTTTCCAAGAGATAATTAATGTTAAAACCTTGAGTGCGTTGTCCGTTGTGCTAAAAATTAAGCAGGGGAAGAAAACTGAATCACCTGGAGTCTTTAGGGGGGATATTGTTTTGATTTTGTAATATACCATGCAACATAGATTGCTTCCAATCTGTTCATCTGCCTAAAGGAGAATCGGAGCTCATCCTCCTTTGCGTTTTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAA