| mature miRNA: AGAATCTTGATGATGCTGCAT species: Solanum lycopersicum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|225409822|gb|FS183535.1|FS183535 FS183535 Solanum lycopersicum cv Micro-Tom root Solanum lycopersicum cDNA clone LEFL3027C03 AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): CCTCCTCCTCTTCATTTGTTTAACACTTTTTTTCATGTCATTTGAATACTCTCNNNNNNNNGGTTTTCTTCATCATCAGTCAATGTTTGAGGATGCAACATCATCAAGATTCACAAAACTTGAAGGGAGAAGTATTTAATTATATATTTAGGGTGAATATTGGATATATAATATAGTTCAAAGTCTCTTATTTTCTCTCTTTGGGAATCTTGATGATGCTGCATCATCTAACATATGACTCTATCCTTGTAAACAAAAAGTCATGGTGGTGATCTTAAGGTAATGTTTTTTCTGCCTTTTGTGATTTTAAGATATTTAATAATTAATGTATAGTTTCAGTATGAGTAATGATATGGATCATCAATAATAGGGAATTATTCAACTATAGCAAGAAATTTCTTGCTATAAAAATGTTCATTGATTAGGTGCATCACATGTAGTAGGTTAATTACTTAGCTATATTTTATTCCNNGTTTTTGTAGTCCACATTTCAATAGACAATTCATTACGTCTATTTATCT | |||||||||
gi|261464964|gb|GT163535.1|GT163535 M82T1_02_M01_M13R LA3475 Type I trichomes Solanum lycopersicum cDNA, mRNA sequence AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): TTTTTTTTTGGTGCAAACATCAATGCAATCCCTTTATATCATAATCAGTTAACCAATGTATAGAGTAACTACATATCAATTTAAAGTTTCAGATGTTGTTGCCATATTAGGGAAAATTTCAAAACACTGCAAATCCGAACAACAAATATACAAACATACCAGCAAAGGGGAATCTCAAACACGATGTCAACTTCAAGAGTCCACCTTTGCACCTTTGATAGACATCCCTGCACACAGTGTATTGCTTCACAAATTACCAAAAGAGATACAGCATCCGATGAAACAAATAAGATCAGGATACTGTGCGTCCATAACAAACTGCAGCAATATAAAGATTCTTGGACCATTTCTCCTTAACATGAGTACTAGGAAAAGCTGATGTTCGCAGTGTTTCTTGTGTTTCATCTGTTAGTTTCCTCTTTGGCACACTCAGGATAAAAGCAGCTTGATACAGGTTGCAGCAGTTGCAGTTATCCC | |||||||||
gi|16250310|gb|BI935838.1|BI935838 EST555727 tomato flower, anthesis Solanum lycopersicum cDNA clone cTOD24M15 5' end, mRNA sequ AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): TTCAAGCTCAAAGCAAGGAAGTCAAGAATTGGGGGATAATAGAGGTCAAAATTCTTCATCAATAATGCAATTGGATATTGATTGGCAGCGCCATGGTTTAAGGCCTGAGGTATATTTACACGATCAATAGCTATATCTTGTTTTCGTTGTGAAATTCAATTTTTACCTCTGATGCAAACATGTTTTAATTTCCAGAAGCAATCTGCCTTAATTGATGCTCGAAGAAGAGAAAACAGGTACAATGAAACAGAAACGTTGCAACTTTTAAGCCAGACGCACTTGCATTCTCCAGCCTCCTTGAAGCATAACAATAATAATAATAGTCAAGTGCAACGGTTTGGCCAATTTATGAGACCTGGTGATCAATCCCATATGATTCAAATGTTTCCACAGCAATTTGGCTCATCAAATTATCAAATTCAATTTCCAAGTGGCAGCAATGGTGGAAGAATTGGAGCTACAAATGTAAGAGATCTATCGCTTGCGGCGACGAGTAATGGTTCTTCACAATGGCAATCCAATTTTCCTCCTCAGATATTTGTAGCTGCTGCAGCATCATCAGGATTCCCTCAGCAGATAGTAAGACCTCAGAATTGGTCCTCAGAAAATGGTTTCCATCATTCACTCATGAGACCTTCTTGACTCATTTAATAACTTGCCATATTTCTATTTGTGTTTTTTTTAAGATAATGTGTAGATTAAAGGGTTGATATTCTTAATACTCCATATATATTACCTAAGGGCTCTTTGGTTTGAAATTAGAAAAGAAAAAAAAAAGGTAGACCAAATGTTTTTGGAAATATGTCTCCCTCGTAATTTTGTCCATACT | |||||||||
gi|76573231|gb|DV105898.1|DV105898 chiou00963 Subtractive cDNA library of roots under phosphate starvation Solanum lycopersicum AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): ACTTCGTCTACGTGTTTCTCCAAGTCATAACGTTTACCATTGCTGGATTCGGCTACATTGGAACGATAGTCCCCTCTTAGCAGAGGACCAGCACCAGCACCAGCACCAGAAAACAACAACATTGTTTATTTCGTCGTCTACACAGATATATAAGTTATATGCAGAACATTGAACCAGAAAAAAAAAATAGTAGATGGATTAGCAAATAGATAGTTTTTCATATTTTTCTCTCTTGTTAGAGTGCTGTTTTTAGCTGTGTGAAATTATATTTTGATTGAACTTGTAAGTTATTTTTTTTGGTATTTTTGCATCTCTTCAGATTTCTAGAAAAATGGCAAACAATGGCCAAATTCTGTAATCAGTTTTTTTTTTTTTCTTTTTTGGCATTCTTTTACTTTGATCATGGATGTATTATTATCAAGACTCTTTCAATATATAGAGGT | |||||||||
gi|16249620|gb|BI935148.1|BI935148 EST555037 tomato flower, anthesis Solanum lycopersicum cDNA clone cTOD21P22 5' end, mRNA sequ AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): TAATTTGAAAGTATATATATATCAAAGTAAATAAACTTGGAAAATATGTCCCATGTATACATATATAGAAAGCAATTACTTGAAGATGTGTAATAGCAACAAATTCCACAAAACCAAATGTGTTCAAACAACATTTATGATAATCGTATGAAAACTCTTCATCATTCACTACAAATCGAGTTTACTTCTGTCCTCTATTCATAAAGTTCAATAAGCGGCATTTTCCTGGTTAAAGTGTTGTTGCAGCTTCTCATTTGTGTAATTAATGGAGCATTGTTAAAATCAGTCAAACAAGCAAGAATATAATGTTTTAGAAAGCCCATTTATACATATGTTGAAGCATCATGATCAAGATTCTGTTTATTACTTCTTCAGTTGTGACCATTACACATTTTGATAGTGCATCTTCAAAATCCTTAAGATCACACATCGAAAGCTCTGCAATATTCTGAAGATGTAATTTAGACTTGTCATCTCTTAGCATTGATGAATCAGTTTCTTTGCCCCCTGTGAACTGCTCTTTCTCACTAAAGCCAACAACATCCATGGCCCTCATTGTTTCCAGATAATCTTGAGCAATACTAATACCTACTAAGTCAAAGAAACTCGCTCTATACTTTTAAACCTCTTTCTAGAT | |||||||||
gi|16249375|gb|BI934903.1|BI934903 EST554792 tomato flower, anthesis Solanum lycopersicum cDNA clone cTOD21O11 5' end, mRNA sequ AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): ACTAGAGGTATATATATGTAATGATGGATGCATATGCCTCCTACTTGTTCTGAAATCTGAAGTATAATATTTGAAGTGTAATATGTTTCTAATGTATAATTTTCTTTGTCATCTGATTTATCATTATCAAGATTTTCAATT | |||||||||
gi|117701383|gb|DB703932.1|DB703932 DB703932 Solanum lycopersicum cv. Micro-Tom leaf Solanum lycopersicum cDNA clone LEFL1081AA0 AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): CTAGCCAAAGGAAAAAAGCTGTAACTCTTCTGCTACAAAAGGGAACACCCCATTTCTCTTCGTTCTGTCCCCTCTTCCTCCCTTACCCCACCCCCACCACCATTTCAAACCCCATAGCAAGAAAACCACCATTTTCTTTCTTCTCTTCTAAAAAAGGGGAAGAAAGAAGAAAAAAATAGTGGAATTTTTTGGTTTTCTCAGAGGAGGAAAAAAACAGAGCAAGAAAGATGAGTAGTGAAAAAGAAGATGGTTTAGGTTTGAGTTTGAGCTTAGGAATCATGAGTTGCCCTCAGAATAATCATAAAACTACACCTTCTTTACCTTTGAATCTCTTGCCTTTCATGCATCATCATCAAGTTTCTTCAGGGAGAAAAGATGAAGGTGGAGAAAGGGTAAGAGGGGGAATAGATATGAATGAACCAGCGAGGATGATAATAGAGTGTGATGATGAAGAAGATGAAGAAGAAGATCAGGTGTTAATGGTTTCCTCACCTAACAGCACTGTTTCTAGTGTGAGTGGAAAGAGGAGTCATGACAGAGAAGAGAACGAAGGGGAAAGGGCCACCAGCTCACTGGAGGACGACGGC | |||||||||
gi|117691535|gb|DB700858.1|DB700858 DB700858 Solanum lycopersicum cv. Micro-Tom leaf Solanum lycopersicum cDNA clone LEFL1071DH0 AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): TATTTTTCTTACAGTCGTTGTTTGCATATGTGGCATAATCAAGATTCACGTGAAAAGTTGCAAATTGGTTATATAATTGATGAAATTAATGGCTGGCTATTTGAAACTCACGAGAATCTTGATGATGCTGCATCAGCAATAAACGACTATTGCAATTAGAGCATTGCAACGATACAGAAAAAATTAATACGACATGAATTAAGGAATGATCTATATATTTCTTAGATCGGGAACTTGTAAGTATACTTCCTAGTCCTTTATTCGTATGAATCTATATTTTCGGGAACTTTTTCATGTTCTTGTAGCTGAATTTCATTGTTGTTAATCTGTTTTTTCAAGATAGAGCTACTGAATTTAGATTCTCTTAGTTTTATCTTCTTTTTTTTAATATAGAAATCAATAATTAGGCACAAATCTTTTAAGACTGATTAGAATGAGTTTCAAATTAAATATCATTTTAGAAAAAGAAGTGCATAGATCTTTGGTTATTCTCTCAGCAGGTATTCATGAAGGAGAGCAGAGCAGATTCGAGATTTGAAGTTTATGAATTTTTATA | |||||||||
gi|16218046|gb|BI922018.1|BI922018 EST541921 tomato callus Solanum lycopersicum cDNA clone cLEC75D24 5' end, mRNA sequence AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): CAATCAAATTCGCCGTGAAGCTTTGGAGCTACCACTCGTTGATTTGTCCACAATAATGAAGGCTACCAATAACTTTTCACTTGAGAACAAGATTGGAGCAGGCGGCTTTGGGAAAGTTTTCAAGGGAGTGCTAGAAGAAGGACAGGAAGTAGCTGTCAAGCGGCTCTCTGAAACGTCCAGACAAGGAAACGATGAGTTCAAGAATGAAGTCAGCTGCATCGCGGAACTTCAGCATCGAAATCTTGTGAAGCTTCTTGGATGCTGCATCGAAGAAGAAGAGAAGATACTGGTGTACGAATACATGCCCAACAAAAGCCTGGATTTATTCATCTTCGATCAAAGAAGGAGCACATTACTTGATTGGCCTAAGCGTTTCAACATCATCAACGGGATTGCTCGAGGACTTATGTACCTTCATCAAGATTCTAGGCTAAGAATCATCCACAGAGACCTTAAAGCTAGTAATGTCCTGCTTGATTTTGAAATGAACCCGAAGATATCAGATTTCGGGATGGCCAGAAGTTTTGGAGGGAACGAGACGGGAGACAATACAAATCGAGTGGTTGGAACATACGGTTACATGTCCCCGGAGTATGCAGTCGATGGGATTTTCTCAGTAAAATCAGACGTCTTTAGCTTTGGCGTATTGATACTAGAAATTGTAAGCGGAAAGAAAGACAGAAGATTCATTCATCCAGACCCACATCTCAACCTCATTGGACATGCATGGATGCTACATAGGGAAGGGGAGATCATCGGA | |||||||||
gi|58237439|gb|BP893968.1|BP893968 BP893968 Lycopersicon esculentum maturing fruit Solanum lycopersicum cDNA clone FB14CA05 5', AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): ACTTGTGGAATGGAGCATATTCCAATTTAATTCCCAACTATGAGGAAAGAGTATCCGGGAAGAGAATAGACGTAGGTACCTCCCACGGACACCCAAACTGGGCAATGCAAATGCATAGTCAGGTCGGAACAACGCCATTGTCAATGTTCTCTGCTGCAGCATCATCAGGATTCTCAACTCCGGCTACCACTGCTTCGGCCTCTCAAATGTCTGGTCCCAACAACCCCAACACTCTCAATCTTTCGTTTGCTTCATATTCGTCACCATCAACGAATACAGCTCAATACTATTACCAGATCAGGCCACAACTACCACCTCCATAACATGTATTACTATAAATACATTTACATAGTTAACTCAAAAACTGATTCCATTTGTAAGAATTGTTTGTTATCAATTCATTTACATGTTGATTTTAAGTTACAACTTGTAAGAATTGGAATGTGAAGATTCAAATTTCCATC | |||||||||
gi|261468284|gb|GT167617.1|GT167617 M82T7el_07_K16_T7-ZL LA3475 Type VII trichomes Solanum lycopersicum cDNA, mRNA sequence AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GGGACAAGAACTGGGATTTGCAGCATTCCTTTTCTTCTGTGGTTTATATGATGTCCTTTATGGTAAACGTCAGTACTTCGTCTACGTGTTTCTCCAAGTCATAACGTTTACCATTGCTGGATTCGGCTACATTGGAACGATAGTCCCCTCTTAGCAGAGGACCAGCACCAGCACCAGCACCAGAAAACAACAACATTGTTTATTTCGTCGTCTACACAGATATATAAGTTATATGCAGAACATTGAACCAGAAAAAAAAAATAGTAGATGGATTAGCAAATAGATAGTTTTTCATATTTTTCTCTCTTGTTAGAGTGCTGTTTTTAGCTGTGTGAAATTATATTTTGATTGAACTTGTAAGTTATTTTTTTTGGTATTTTTGCATCTCTTCAGATTTCTAGAAAAATGGCAAACAATGGCCAAATTCTGTAATCAGTTTTTTTTCTTTTTCTTTTTTGGCATTCTTTTACTTTGATCATGGATGTATTATTATCAAGACTCTTTC | |||||||||