| mature miRNA: AGAATCTTGATGATGCTGCAT species: Vitis vinifera database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|83275839|gb|DV939847.1|DV939847 CSECS171G02_POSu0038 CabSau Berry Postveraison Stage 38 (POSu0038) Vitis vinifera cDNA clone AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): CTCAGCTCACCAAATTATCAGATTCAGTTTNCAAGCAGCAGTAACGGAGGCCGAATTGCTGTCAACGGAGGAGATCTCTCTCTGGCCACAAACCATCAACAATGGCAATCCGGTCCCCCACAATTGTTTGCAACTGNTGCAGCATCATCAGGATTCCCACCGCAGATGATTAGACCCAACCAACAATGGCCGCAGAAAAATGGGTTCCACTCTCTCATCAGACCCTCCTGACCCATACAAACAATTCTTCTTCTTTTTTTTTCTTTCCAATCTTTTTTCTCTTTTCTGCCTCAGCCATCACCTCCCATTTTCCATTCTTTTTCAAGCCCCACCATACCATGTAAAAAGAAAGGAAATCAGTGTTGTGTACGTGGCTGTCTGTCTTCTACCTCTCAAAACCTCCTTTACAGAGACAAGAACAAAACCAAGGAGGTTTGAGGGGTGGTGTTGGGGGATATGAAGAGGAAGGATTCCTTGTCTCTGGGGAAATGTGGGTCGTCGGTCAAACTAACAAAGGAACTAAATCTTCAACTAGATATTCTGGCTTCTGACTAAAACTACTGCTGATCTGTTTATATGTATTGATGATGATTTGTTTTGCTTAAAAAAAAAAAAAAAAA | |||||||||
gi|294965536|gb|GW839107.1|GW839107 Summer_Black_2504 Grape cv. Summer Black flower and fruit Vitis vinifera cDNA, mRNA sequence AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GGGGGAGCATCATCAAGATTCACAAGTATTGAGACTCAGTGCGTGGTGGTGATGGTGACTTATGTGGTCCCTTCCTACACTCCGATGGCTCTTTGATATGGGAATCTTGATGATGCTGCCGTGGCAATAAATGGCTAAATTTTTATATAAATCATCTCCAAAACCACAAAACAGTTGCAGACGATCGAGGACG | |||||||||
gi|156727233|gb|EV231344.1|EV231344 VV_PEa20c12.b1 Vitis vinifera cv. perlette LibA Vitis vinifera cDNA, mRNA sequence AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): CGGGTTGTTATGCTCCAGGACGCGGCATACGGCCGGGGATTGCCGCAAGCTTTTGATGAAAAGGGATTAGTGCAACGACGTCGTTTTGCATTCAGCCTCTAGAAAATACCGGACTCTCGACTTCCCGAGATCGAAAGAAAAAGGGAGAGAGGGCTTTGGTTCGCTCAGAGGGAAGAAAATGTCCTCATATGATAATGTTATTGGAGGGAAGCTAAAGCTAAAGGGAAAAGCCCTGGATGTGAAGGCTGGTGGAGTGAAGAAAAAGAAGAAACACAAGAAGCAGTATGATCAAAATTCTGAAGTCACCGAAAATGAGCTTTCAGCAGATGGAAGTACAAGATTATCAACTGATCCCAACGAGGAAGATCCAAATGATGCCAACAAATCGAGTGGAGAAAAAAATGCTGCTCCATATGATGATCATCTCACGCCAGCTGAGAGACGATACATAGAGCAGAGAGAGAAACTGGATGTGAACAGGCTGGCCAGGATATCTAATAAATCACACAGGGATCGGATCCAGGACTTTAACCAGTACCTGGCAAACATGAGCGAGCATTACGACATCCCTAAAGTTGGACCTGGCTAACAAGTTGAAACAGAATTTCAGAGTCCCAAGGCCAAAGGAGGAGGACTGCTTTCTCCCTTGGTGCAGGTACCTAGTGCTGTTATTGCCCATGTTGTTGTTGGGAGGGTTGGTGTTTGCTGTTTTCCAAATTATGCCTTCTTTCTGTTCATCAACAAAAACACCATCATAGCTTTGCTTTGGAACTACTAAGTTAACACTACTGCATCTTTGTGAGGATTTGTCTTGTAGTATAACTTCCTCCTGCCAAAAACTTTTAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGTCGGCCGCCTCGGCCCAGTCGACTCTAGAATCGAGCAAGCTTATGCATGCGGCCGCAATTCAAGCTCCCTTGGCCAATTCGCCCTATAGTGAGTCGTATTACAATCCCTGGCCGTCGTTTTACAACGTCGTGAATGGGAAAACCCTGGCGTTACCAAATTTAATCCCCTTTGCACCCATTCCCCCTTTCCCCAGCTTGGGGAAATAGCCAAAAAGGCCCGCCCCAAATCCCCCTTCCCCACAATTTGGCCACCCCTGAATTGGGAAAATGG | |||||||||
gi|110383253|gb|EC947612.1|EC947612 WIN0542.C21_C21 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GGCATATGACAAAGCTGCTATCCGATACAATGGAAGGGAAGCGGTCACCAACTTTGTGCCAAGTACCTATGGAGAAGGGGCAATCTTAGAGGCCAATGACAGAAGCAGTGGGCACAATCTTGATTTGAACCTTGGGCTTTCTTTCCCTCCCGATGGTCCTAGGGGAAATGACGCAGTTGGGAGGAGATCCATGGTTGAGGGCTCCACTTACACACTAGTTGGTGGACAACCCCGCCATAGTCTAACCACAGTATCCAAGCACCTTCCCATGATATCCGGCATATGCACTAGTTTCTTACCAATTCACGAGGAAACAGCCCTGGAGAAAAGGTTGGAAGGGGTTTCTTCACCAAGATTCTCAAACTGGGCAAGGCAAGTGTATGGCCATGGTGTCAATATCCCAATCCCACTGTTGTCTACTGCAGCATCATCAGGATTCCCTTCTTGCTCCACCATTGGTCCCTCTGCAACTCTTCCACTATTAAATCCCAGGAACATTAATCCTGCCCTGCAGCCTCCTCCACAAATCTCCCCACCAACCACATCCACCACCAACAGTACAAGTTGCTTCTACAATTTTGGGAGCTCAAATCAACAGATGCAGTTTTGATAATTTTTTTCCCCTCTTTCTGCTTAGGAAGTGACCCTGCTGGAAAGCAAAACCAATTAGAGAGTCGTTTCTGTGCTTGTTTTCTGTTTAATATGAAGCCATGTAAACTGATCATAACAGTGTACCTGGTACTTCTACTTGAAGCACTCCATTTCGTTTCAAAAAAAAAAAAAAA | |||||||||
gi|110373583|gb|EC937832.1|EC937832 WIN0516.C21_L15 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GATTCAAGTTTTGCTTAACCAGGATTTCGATGTTATTTCCAGCTAAAGGATGATCATTTACATAAATGCAGTAGACAAGGCAGAGGGGCAATAGATTTATTTGCATATATACTAAGAGAGTTGTGTGTTTTACCCATTATTTAGAGAACCCCAACATACAAAAGGGAACACCTCAACACTATCCACTCCAAGAGTTGAGACCTGAGATTCTACAGCCTTGAGTCACCTCTGTGCTGCCCAACCACCAGTTCAGAAGAAAGCTCTACTCCCATAAAACACTCTTGGACTGTTGTCCTTCACTGCAGGCAAATTTTCATCCATGCTCGAGTTTTCTGAATTGTGGGACTCATTTTTGATGTCCATAGGAAGCTTCATCTTTGCCAGGGACTCAGTGAATTGCTGCATGCTCTTCAGGTACATATCCACGATCTCTTGCTGAACCACCTTTTCTTCTGCCTCAATGTTTACACTGACAACAGGGTGTGTAGTTGCCTTTCTGGGGTCTGCTGAGAAGCCACTCTCAGCCTCTCCAACAGCTTCAATCCTTTCCTTTCTCGATGAAACAGCATCAAGATTCTGAGACTTTGCTGCTTCTGTAGTGTCAGAAAAAGATTGAGAACTTGCAGGAATTGAAGTAGAGGGAGACCCATCGGTTGAAACACTCCATGGGGTAGTTTCGCTCTTCAGAACTTCAAAGGCATCATCATAATCTGTTGAGAGAAAACCGGTATCTGAACCACTTTCAGAGCTTTGCAAGTCTCCTTCAGCACATTGTATCTCAAA | |||||||||
gi|110713794|gb|EE090027.1|EE090027 S6B05790 Fruits 7-9 mm (VvS6) Vitis vinifera cDNA clone S6B05790, mRNA sequence AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): GGGTCTAATCATCAACAATGGCAATCCGGTCCCCCACAATTGTTTGCAACTGCTGCAGCATCATCAGGATTCCCACCGCAGATGATTAGACCCAACCAACAATGGCCGCAGAAAAATGGGTTCCACTCTCTCATCAGACCCTCCTGACCCATACAAACAATTCTTCTTCTTTATTTTTTTTCTTTCCAATCTTTTTTCTCTTTTCTGCCTCAGCCATCACCTCCCATTTTCCATTCTTTTTCAAGCCCCACCATACCATGTAAAAAGAAAGGAAATCAGTGTTGTGTACGTGGCTGTCTGTCTTCTACCTCTCAAAACCTCCTTTACAGAGACAAGAACAAAACCAAGGAGGTTTGAGGGGTGGTGTTGGGGGATATGAAGAGGAAGGATTCCTTGTCTCTGGGGAAATGTGGGTCGTCGGTCAAACTAACAAAGGAACTAAATCTTCAACTAGATATTCTGGCTTCTGACTAAAACTACTGCTGATCTGTTTATATGTATTGATGATGATTTGTTTTGCCCCTCTGCTATTTATAACTGCACCTTTTCTAATATTTTAGTTATCATCCTTTTCAATACCAATTTCCATGTCTTTAAGAATATCGATTGTTGTGTGAATTTCTTACTATTTTTAATTTTTTTTGTTTGTTTTTCCACCTATTCCTCTTGGACTGTAAAAGCTGTTGGAACTGATTCTCTGGTTCCCTGATCGAGTAATAATATCTTAGAAAGTGTGACATAAGAAAGAAATTTCTGATGAAATCCATTTCA | |||||||||
gi|110391992|gb|EC957091.1|EC957091 WIN061.C21_K23 Cab Sauv seed normalized (WIN06) Vitis vinifera cDNA clone WIN061_K23 3', mRN AGAATCTTGATGATGCTGCAT EST sequence (targeted fragment marked with yellow): TTCCCTCTTGTCCCTCCTTTAGTCCTTTGCTCAGATACTATTAGCTTTTCTCTTCACATTCTCTCATCTTTTTCAAGTTTTTGATTGTGGGTACATGTATAGAGTACCGTAGAATAGCTTTTCTACCAAGTGGGTCTTGTTTATTTGATAAGCTGAGATATGGTTTTGAAGCGTTCTGCTGTCCTTCCTTGCATTTGCCTTTACTTTTTCCTTCATAGAATGTGGTCTTGAGGTTAGGGCTAGGTTCCTTCTTCCTTTACATCTCTTTTTACTCGTTTTCTTTCTTTATTCCTTTACTTTTGCATGGATTCATATGATGAAAGAAGATCTCAAGACACCAGTCACTGTTTGCGGATGGAGCATCATCAAGATTCACAAGTATTGAGACTCAGTGCGTGGTGGTGATGGTGACTTTTGTGGTCCCTTCCTACACTCCGATGGCTCTTTGATGTGGGAATCTTGATGATGCTGCAGCGGCAATAAATGGCTAATTTTTATATAAATCATCTCCAAAACCACAAAACAGTTGCAGAAGATCGAGGACGGTGCCCATCATGACAATATCAGGTTCGAACAATGAAGGCAGAACTTGTTAATTATTCTGCAAAAAC | |||||||||