| mature miRNA: AGACCAAGGAAGTGGGTTGGT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73878813|gb|DT481551.1|DT481551 WS02532.BR_D06 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02532_D06 5', mRNA sequence AGACCAAGGAAGTGGGTTGGT EST sequence (targeted fragment marked with yellow): GTGAAAATCTGAACTTGAAGTAGTAATACGTGTTGGTCTCTCTCTTTATAACACCATTTCATTTCTTTGGTTTTTGGTTACTATTATTGTTATCATGGGGTTTTGATTTAGTTAAGAATCTCCAGTTATGGAAACCTTAGATTCTCAGATCTCTGTTTTTTTGATCAGTTTATGTTGTTTGTTTTTGATTTTTTTTCCAGTTCTGTGTGATGTAATCATCACTATCTGATTCAACAACATTATCATTTCATAAAGAGAAAAAACCCAAAAAATTTTCCTTCACTTTCTCGAGAACGTTTGAGTCTTTTCTCATTTCTAATAAAACCCATTTGGTTTTTAGATCTCTAGATCTGTTTCCTTTTTTGTAAAGATCAAATTTTTTAGTTTCTAGATCTGGGTTCTTCCTCTTCTTTGTTTTTTTTAGAAGTTTTTGAATAAAAATGAATTATTTCCCTGATGAAGTATTAGAGCATATTTTCGATTTTGTAACATCACAAAGAGACAGGAACTCAGTGTCTCAAGTGTGTAAACCATGGTACAAAATCGAAAGTACTAGCAGGCAAAAGGTTTTTGTAGGGAATTGTTATGCAATTAGTCCTGAGAGAGTGATTGAGAGGTTTCCAGGTTTGAAATCTATCACTTTGAAAGGAAAGCCTCATTTTGCTGATTTTAATTTGGTTCCTCATGATTGGGGAGGCTTTGTTTATCCATGGATTGAAGCTTTTGCAAGGAATAATATGGGGTTAGAGGAGCTCAAGTTGAAGAGGATGATAATATCCGATGAGTGCTTGGAGCTGATTTCAAGGTCTTTTGC | |||||||||
gi|73880002|gb|DT482740.1|DT482740 WS02520.B21_K12 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02520_K12 3', mRNA sequence AGACCAAGGAAGTGGGTTGGT EST sequence (targeted fragment marked with yellow): GGAAAAATCAAGCAATTCTCTCTCAATTTGTTTCATACTGGCTTAGGTAACTTCGTGGGACGATTTCGTTGAGCGATCCAATTCTTTGGTCTCTCTGCTTTCTTTCCCCCTCAAAATGGCAACACCACCTGTACTACCACAACTCCCAACCAACTTCGAAGCAAATCCTCCTCCAATGGGGCCAACACCGCCGCAGCAGCCACCAGGAAAAGACTGGTAAGGAAGTAATTGACTTCAAGGAAGTTAAGCGAATAGATCATATTCTTGCCTCCTTACAGCGCAAGTTACCACCAGCCCCTCCACCACCATCTTTTCCTGAAGGCTATGTACCCCAACCAACTACAGAAGAAGAGAAAGGCCCCGAAACCCAACAAGGAGGAGAGCCACAACTTCCTTCTGTTGATCCGATCATTGATCAAGGTCCTGCCAAAAGAATGAAATTCTGAAAGTGGTCTTTTCTTTATTTCAGCAGATAATCGAGTAATGTAGAGAGCAGAAGCCATCATCTCGAAGATGATAGGAGATGTCTTCAGTGGAAGAAGCTTTCCAATCATCTTTATGCCTTTTAATCTGATCGTAAGTTACTGTTTAACAACACAACATAATACTAATTATGTAATTTGAGTGTACTGTTTAAATTCAAACCAGTTTCCCTCGCTATACATGATAAAAAAAAAAAAAAAAAA | |||||||||
gi|73871330|gb|DT474068.1|DT474068 WS01230.BR_L02 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01230_L02 5', mRNA sequence AGACCAAGGAAGTGGGTTGGT EST sequence (targeted fragment marked with yellow): GACTCGAACTGAACCCGACAGCCAGTCTGCATCTTCATGCGATCCATTTGCGCTTATCTGATCTGATCTGATCTGTTTCCATACCTTACCTCTCTCCTTCAACAAGAATGGCATTGAAAAGCAGTTCAGCTGATGGCAGAACCAGGAGTTCTATACAGATATTTATCGTTGTTGGGTTATGCTGTTTTTTTTACATCTTGGGTGCTTGGCAAAGAAGTGGCTTTGGCAAGGCTGACAATCTTGCCATGGAGATTACTAAGAGTACAGGAGATTGTAATATAATCCCGAATCTTAATTTTGAGACCCATCACGGTGGCGATGCTGGGTCCAGTGATGATTCCGATTCAAAACCCAAAACTTTTCAGCCTTGCCATTCTCGTTTTACTGATTACACTCCTTGTCAAGATCAGAAGCGTGCTATGACTTTTCCTAGGGAAAACATGATTTATCGAGAGAGACACTGCCCTCCTCAGGAGGAGAAGCTTCACTGCTTGATACCAGCACCTCAAGGTTACGTCACCCCATTTCCTTGGCCTAAGAGTCGTGACTATGTGCCCTTTGCTAATGCACCCTATAAGAGTTTGACTGTCGAGAAGGCTATTCAGAATTGGGTCCAATACGAGGGCAATGTATTTAGGTTTCCTGGTGGAGGCACCCAGTTTCCACAAGGAGCAGATAAATATATCGATCAGCTAGCTTCGGTGTTACCATTTACCAATGGGACAGTCAGAACTGCATTGGACACTGGTTGTGGGGTTGCCAGTTTGGGTGCGTACCTCTGGAGCAGGAATGTCATTACCATGTCATTTGCTCCAAGAGATTCACATGAAGCGCAGGTTCAATTTGCCCTTGAAAGAGGTGTACCTGCTGTTATTGGTGTTTTGGGTCTGTAAAGCTTCCATATC | |||||||||
gi|73889617|gb|DT492355.1|DT492355 WS02550.C21_H07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02550_H07 3', mRNA sequence AGACCAAGGAAGTGGGTTGGT EST sequence (targeted fragment marked with yellow): GAAGAAGAAGAGCCCTTTTCCTTGAAATCTCAAAAAACAAACGTTGTCAAGCCTTAAGAATACAATCTTTGATTGGTTGCTTGGTTTTTGTAGCAAAAGAAGAAGAAACAAACCGAGCCCACTTCTTTGGTTTGAGGTTCAATCATGATGATGTCTATGTTCAGTTCATTTGATGCCCTATAAACAGAATCATTTGGACAGAAGCCCAACTTCTCGTTCAGTGCTCCCAAAGAAGGGAACAGGCCAGAAGTTGAGTCTATGAAGAAGAGCTTGATGTCTGAAGGGAACAAGGACAAGTCATCTGCATCGTCAAAATCACCTCCTGCAAGCATTGACAAGTCATTACAGCAACAGAAGAGGAGACTAAGGTTTGCTCCGGAGTTGGATGGAGTTCACTGTTTTGAGACAATACTTCCTTACTGAGCCTTCATTTCTTCACTGATTTTTGTATATATTGAGCATCTTTAATTCAATTTAAGGATCGAAATAAATTCATTAATAAAACTCAGAGCTTTAATGGAGTGAAAAAAAAAAAAAAAAAA | |||||||||
gi|73870730|gb|DT473468.1|DT473468 WS01229.BR_L19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01229_L19 5', mRNA sequence AGACCAAGGAAGTGGGTTGGT EST sequence (targeted fragment marked with yellow): GGTGTTTCGTGGATCTAAAAAAAAAACAGTATTTACGGCCTGCAAGTACTCCCTTCCTACCACTACCACTAGTGAATAGTCAGTGATATTATTACTCAATTTCTTTCAGAGATCTCGTTGTTCAACATTTACTGGTCACTGAGATCGAGATCCCCCTCTCTTGTCTGCATCTTCATGCGATCCGATGGCGTTGAAAAGCAGTTCAGCTGATGGTAGAACTAGGAGTTCTATGCAAATATTTATTGTAGCTGGGTTATGCTGTTTTTTTTACATCTTGGGTGCATGGCAAAGGAGTGGATTTGGCAAGGCTGACAATCTTGCCGAGAGGATTATCAAGAGTACAGAAGACTGTAATATCATTCCAAATCTTACTTTCGAGACCCATCATGGTGGTGACATTGGGCCCGACGATGATTCTGAATCTAAATCCAAAATCTATCAGCCTTGCCCTTCTCGTTTTACTGATTATACCCCTTGTCAAGATCAGAGTCGTGCTATGACTTTTCCGAGGGATAATATGATTTATCGGGAGAGACACTGTCCTCCTCAACAAGAGAAGCTACACTGCTTGATACCTGCTCCTAAAGGTTATGTCACCCCATTTCCTTGGCCTAAGAGTCGGGACTATGTCCCCTTTGCTAATGCACCCTATAAGAGCTTGACTGTCGAAAAGGCTATTCAGAACTGGGTCCAGTACGAGGGCAACGTGTTTAGGTTTCCTGGTGGAGGAACACAGTTTCCACAAGGAGCAGATAAGTATATTGATCAACTAGCTTCGGTGTTGCCAATTGCTAACGGGACAGTCAGGACTGCATTGGACACTGGTTGTGGGGTTTGCAGTTTAGGTGCATACCTCTGGAGCAGGAATGTCATTGCCATGTCATTTT | |||||||||
gi|38576205|gb|CK091880.1|CK091880 F131P59.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F131P59 3', mRNA seque AGACCAAGGAAGTGGGTTGGT EST sequence (targeted fragment marked with yellow): AGAGACTCAAGGTAGGTCTCTTAACACAGAACAAAAACCAATAAATATGGCAGCGGAGACAGTGAGGCTAACAGGTTCAGCTCAGGTTCAAGCACACCCTGCAATTTCAATGGGTCTCAAAGAAGACCAACTCACTTTCTTGGTCTCCCTTCTTCTCGTGCTTCAATTTCAATCTCTTCTTCTCTCTCTCATTTCCTGGGAAGCTCTGCGCGCATTGCCTCACACTCTTCTAAGTTCTCAACTTCACGCCAACTGCGAGAGAGGAGGAGAAACTTCTCCGTCTTTGCCATGGCTGCTGATGAGGCAAAGCGTACGGTGCCTTTGAAAGATTACCGGAACATAGGGATTATGGCTCACATAGATGCAGGAAAGACTACTACAACCGAACGGATTCTGTACTATACAGGAAGAAACTACAAAATAGGGGAGGTACATGAGGGAACAGCTACAATGGACTGGATGGAACAAGAGCAAGAAAGAGGGATCACCATTACTTCTGCTGCAACTACCACATTTTGGAACAAGCATCGCATCAACATTATTGATACTCCTGGCCATGTTGATTTCACACTTGAAGTGGAACGAGCTCTCAGGGTTTTGGACAGTGCTATCTGCTTGTTTGACAGTGTTGCTGGTGTGGAACCACAATCTGAAACTGTGTGGAGGCAAGCGGATAAATATGGAGTGCCCAGAATTTGCTTTGTCAATAAGATGGATCGGCTTGGAGCAAACTTTTTCCGAA | |||||||||
gi|73895490|gb|DT498228.1|DT498228 WS0114.BR_L22 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0114_L22 5', mRNA sequence AGACCAAGGAAGTGGGTTGGT EST sequence (targeted fragment marked with yellow): AGAGAGAGAGAGAGAGAGAGATTCGATTCCTTTGGCTTCGTCTTCAGCTTCAGCTAGAACCTTCATCCCTAAATCAGATCTTGTTTCTCCTACAGTGTCCCTTTCTTCTCTGTTTCTCCAGAAAATTCCCTCTCCTTCCTTCCTTCCTTCCTTCGTTCTTCTGTTTCTCTGCAGTCACAGAGAGAGAAAGGGAGAGATTAGTATGCAGTACTGTTCTTATCATTCAATCAGCAGCTACTCATCTGGGGATTCTTTTGATTGATTGATACTGTTTAGAGCGGCATGAATGGCGGCAAGTTTTCTGTGAATCTACTTTCTTGGTCTGGAAATTAGGATCCCCTTTTGCACTTCAGCAAAATGTCAAGTGTCGAGGGAATTGTGGTTAATGATGAATATAGAGAGAGAAGATCTGATTTTGAGAACTCTGAAGATGAAAGACGGCGGTCAAAAATTGGTAATCTCAAGAAAAAGGCTCTGAATGCTTCGAATAAGTTCACCCATTCT | |||||||||
gi|52386101|gb|CV231514.1|CV231514 WS0194.B21_M08 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0194_M08 3', mRNA sequence AGACCAAGGAAGTGGGTTGGT EST sequence (targeted fragment marked with yellow): GGGGATATCAGGCAGGGCTATCTGGAGAGAGCTTGAACATCTACATGAGAGAACATTTGGACAACATTGAGTGGAGTGAAGTTGTTTCAGCTACGGATCAACCACTTTCTTGGTTTAAGATTGAATTTGATGCTCCAACGGGTAACGACCCAGTAGTTTTAAACCTAAGCACGATGGGGAAAGGAGAAGCATGGGTGAACGGACAAAGCATTGGACGTTACTGGCTTTCCTTTCTCACTTCTAAAGGGCAGCCTTCACAGACATTGTACCATATACCTCGGGCATTTCTTAACAGTTCAGGGAACCTGCTGGTGTTGCTCGAGGAATCTGGAGGGGATCCTCTCCACATTTCATTAGACACTGTTTCAAGAACAGGATTGCAAGAACACGCTTCCCGTTATCACCCTCCACAGTAATTCTATGCTGTGCACAGACTTCTTTTAGATTATCTCACAGTTTGATCTTATTCCGCTGTTAATCATTATTTATAAAATAGTCATAACTAATAATCATTCCAATGTTCTTCAAAAAAAAAAAAAAAAAA | |||||||||