miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: AGACCGGCTGTGCAATGCCAGTC
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|88284847|gb|CI406293.1|CI406293 CI406293 Oryza sativa (japonica cultivar-group) leaf of seedling 10mM H2O2 (10min), 24hr afte 

AGACCGGCTGTGCAATGCCAGTC
|||| ||||||||| |.||||||
TCTGTCCGACACGT-ATGGTCAG

EST sequence (targeted fragment marked with yellow):
ACAGCCAGCAGCCACCATTCATTAGAGTGTAAAAAATATCATGTTCTGTAAATTGTATGAGCGATGACGTGCTTTTATCTAGAAAATTAACTAATTATCAGTTTGACTGGTATGCACAGCCTGTCTAAACATGCACCGCCCACCTTTTGTGCCAGAAAGCACAGCGAGCCGCTCGCACCAAATGTGACAGAAACATAGCACAAAGGCACCTATCTTCTCAGGTGGAAATTTTGTGCTTGAAAAGTTCGTATGTTGTGACTGCTGGAAANATCAGCATAGTCATGAGTTAAGTTTGTCCGAAAGATAGGCGGCTCTTCTTATGATTAGGTCTGCTGACGAGCCTTCTGCATATGCTTCCAAAGCTCGGAAGAGTATCATGAATTGGGTTCCATCATCCTTGGGCTTATGAAACACAA