| mature miRNA: AGAGAGTGAGCACACACGGTG species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|117221564|gb|CT859085.1|CT859085 CT859085 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD AGAGAGTGAGCACACACGGTG EST sequence (targeted fragment marked with yellow): GGACCTTAAAGGGGTCAGGCGAGAGGAAGAAAAGTCCCCGCCCTATTAAAGTAATCCTCGGGCGTAGCACCACCTCTGACTATCCTCCAAGCTCCTTCTAACACGACGACTCGGACTTGCCGCTGGTGACTGCTGCCGGTGGTGCCGATCGACTGTCGGACGGCGTGTTTTAGACTCCATGTCTAGAGGAGAAGAGCCAGCAACGGCGGCGGCAGGGCCACCCTCTCGTGACGGGAGGAGGCGGGGGGAAGCAGGCAGGGGGGTGCTACACTCATTGATTCTCCGCCTCCCAAATGGTCGCGCTCGCCGCCCTGTGCGGCGCGCTAGGTCGCCTCGTTCCCTCCGGACACTTTTTTTTTTTACAACAACAAAGCGTGAGGAGGAAGCTATAGGCGTTGCCGTTTTTTTGGGGGGGAAGGACGTCAGGGATTTTCTGCTTCGACTCTTCCTCCAACCAATACCGTCTCCCGATCGAGGATGTTGGGATTTTGATAACGAAGGGGGTGTCTTCCGGCGAGCGGAAGGCCGCCTGGGTGTCCGTCGAGGATTGTGTTATGCTGGGACGTATCTTTTTTTCGGTATACTTGTGGACTTTCGTTTTTAGTCTCACTTTATATATATTCGTGTTCCGTTGGCCTTGGTATTGATTATTATCTTTGATCCTATTTTTGTTATGAGGGGACATGGGTGTAGATGTGAGTATACTATGTTGTTAAACATTAATTTTTTTATTATTAGCTCAGATTTTCTTATATGTAGTTAATTAAGGTATGTATTATTGATTCTATTGTAAGCGCTATTAGACAAATTATTCTTTTCGATGGAACATGGATGTGTGTATACTAAATCTTATTACCAACATTATAGGTAGCAGTCATGCATCAATTATATATCATCATACTGCTCGAATATATTATATTTCCTAATTGCCAATCTTTTTACACAAGTTTGTACAAATTGTAGTTGTAATAAAAATATGAGCTTCACTATGATATAGAGTAACTATACAATTATAGATATTTTTTTTTATATATCTAATTTATTTTTAATGAATTATTATTGCGCATTTAATTTATATAATTATAATATAAGCAGATATCATATTACTTACGGAATAATCATATCTTCCAAATCAGACCGCCTGTGGGCTCACTCTCTTCCACATCTCTCTTCAGGTTGGGTTTCCATCTAAGTGGCTTTCCCACATGCTCATAACGTTTGTAGTGCGTATGCGAAGTATGAAGGACGTATAGGGCCCTATGGGTTGTGGTAGAGTATGACCACTAGAGTATACGAAGCTTCATAATAATTCGAGTTGTAACTAATTATATACCTTATGATTAACCTAATCGATCTTATAGATTTGTAGTGGTTTTTATGAGAAC | |||||||||
gi|66914589|gb|CX101437.1|CX101437 RECm2390 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl AGAGAGTGAGCACACACGGTG EST sequence (targeted fragment marked with yellow): TTTTTGCCCACAATAATATTTCTCATTCTGTATAAATCTGTAACAATAATAATCTAACTAAGTTTAACCAATATGCACTACAAAGGAGCAAAGGCTGGTCAATACGCTCAACATCAAGCATAATGCTATTTGTAGTTTTGTACACACTACCACAGATATAAAAAAGGGCTAATAAAACAACAGGTGCTAGGACCACTGTCCACTGAAACCAAAATAGTCAAGCGGACAAGGAAATGGTTACTGTGCTTCCTAATCAAACTGCAAATGTAGTGACATCTTTTACAGCTCAAACAATTTAGGAGCTTATCCAGAATCTCAACACGGCAGTTTACAACATGGACTACTACGATGACTCTTTCCCCATTCAGCACAGACGTCTCTCTTAAGTTGAAAACAAAATGGCAACAGCCTATCACTGGAAAACCCAGTCAAGATAGGTCAAAGGAGCGGTCCATGGCTTTGATTCCTGTTTCCCTGCAAACGTACCCAGCGTCCTTGTCTCTAAGCGAGTAATCATAGATAGACAATCCTCCAGGCGATTTGTATTTTATACCTGATATGTGAAGTTGACCAGAGTGGGACCAGGTCCAACGCCGCCGACATCCACCGGGAGTCCAACTCCGGTCTGCCAATCCGCCGGCAAAGCCGGGCCACCTAGTGTCCGTATGATAGCCGAAGCCGTCTTGCCCGACACCGGCATAGATGGGATGGCCGGAAACCGCCGCTTAACATCCTCGTGGTCGAAATCCAGGCGCTCCGCCCCGGCCGTGGCGGCCCACCCGGGGGTGAGCGGGTCGCCGGGGCCTCCGAGGATTACGTGCCCTCTCGAACCGNCGTCCGGTGGCCGGCATGAAACGGGGGGGGGCCCTTTCGGGGGCGGGCACCACCCGCGGGGTAGCTCTCTCGATTGCACCGGAAGGCGGATTAGAATAANTAGAGGCGCTGTAAAGATACTCTAAGGTGCCAAAAAAACGGGCGGGGTAATACGCAGGAAAACGCGCCCACAAGTGGAACCCTCCGGGTATAAAGAACGGCCCTACAGGAGTGCTGTATCTGTGTGTGCTCACTCGCTCCATACACTTATATACCG | |||||||||
gi|88326088|gb|CI651142.1|CI651142 CI651142 Oryza sativa (japonica cultivar-group) callus 100ppm ZnSO4 for 1week Oryza sativa Ja AGAGAGTGAGCACACACGGTG EST sequence (targeted fragment marked with yellow): TGTGCTGTGTGTGCTCTCTCTCTCTCCATCCATCAGGCCTAGAGAAGAGGAGAGACAAGNGCCTCCTTCTCCTCATCTCCTTCCTCCTCCTTCCCCCTTCTTCTTCTTCCTCCTCCTCCTCTCTCTCTCTAGCCATACTCTCTCTCTCTCTTCTCCACTCNTCTGATCGACTCCGCTTCGATCCCCGNCGACGACCCCCCCCCCCCGGGGTTTATTTTTTTTCCTATCTCTCTCTCTTCCCTGATTCGGTGCCACGCACGCGCAGGAAGGAACCAGAGCTATCTATCGTGATGTCCACTCTCGCGGCGCATTCACCGTTGGGGCCAGCGGCGGCGGCGCAGGAGAAGGCGGCGAGCCGGAACAAGCGCAAGTACCGNGCCGAC | |||||||||
gi|40493499|gb|BX900796.1|BX900796 BX900796 Oryza sativa library (Han B) Oryza sativa cDNA clone y784c02p5, mRNA sequence AGAGAGTGAGCACACACGGTG EST sequence (targeted fragment marked with yellow): TAATAGCTATCGCTATCATTCATAATCACTCGGTCGGTCGAGCTCAGAACCATGGTGTGANAATGCAGTATGTGATGCATGTATAGTGTCATGCATTATGCACTAGATGTTATCCTGACTGTAGCTAGTGACTGCTCGTGAGCATGCATGCAGTACGCGTCTGCTATTATGTGATCTGCAGTGTGTGTGTGTACTGCGTGTATGCTGAGTCGCTATTACTAGCACGCTGCACGTAGTAGTCTAGTACTCTNATGNCTGTGTACTGATATGTGTCGTATGTCATCGTGCTGTGCTGAGTAGNAGTGGTGACGTAGTCTGACTGCGTATCAGTATGTCTGTGCTAGTGAGGCGTCCATCGAAGAGTAGTGATACGTGACTGACTGTCCGTGAAGTGAAGTCTAGCGAGCGCGACGTGCGGAGTCTGCGTGAGTGCTGAGTAGTATAGCGTCGACTGCTGACTACGTGTATGAGTGACATCGAGAAGCGATGCGTTGCTCGCGCGGACGACGTGTAGTGACTAGGTAAGATGGTAGGTAGGTGTGCACGCATGTGTGAGTGTCTGGGATCTAGTCTACATATGAGTGATCACCTCTGCATGTCTAGTCATGCTGTGAGTGCATGTCGCTGAGTCTGATACGTGCTGTCTGTCTAGACCGGTGATATCAGCGTCAGGTAGCCAGAGCTGTGAGAGAGTTCGTGAACGCAGCGTATGTGAGATGCAGAGTAGTGATGTATGCTAGTTGATGTGATAGAAGATGTGATATGCACTGGGTGCGGTGTGACGGTGTCGGAGGGTAAGGTGGTATGGACGTCCGAGTGAGTCGAGGTAGTCGGTCTGCAGTAGGCTGGATGGTGAAGGTGTGTGGTGGATGAGTGTTGATGTGTGGCTGGATGATGGTGAGGTCGAGTGGGTTGGTGTGGTGGGGTCCTGTGAGGTCGTTTGTGGTCGTGTTCACTTGTGTGTGCGGATGGATGAGATGGAGCGTGATGTGTGGGATCGAGAGGTCGCTTGATCGTCATGTATTCTATGAGTATACACTAATCCGAAGTAGTGACGTGAGTGTTGTGGATGTTTCTATCTCTGGTGCAGCGGTATTGTAGTGTATCTCATTGCTGGTGATGGTCGTACGCTGTGACGTTGGTGTAGATATTCTTATACGAGAGTAGTTGCTGGATGTCGATGTCTGAGTACGTATGATGTGCGTGTATGTGAGTTGTGGTCTATTGAGACGTATGCTGTGTCTGTGTTGTGTGTCGTAGATGATACTGTCGTTCAAGTTTGTGTCTGACGTAGTCTCGTGTGTACCTGTCGTATTTCAGTGCTCTCATTGGCGATGCTCTCTCTGCTCGCCCGTGTTGTTGGTGTGTTGGGTGGTGTTTGTCTTGTGTGCTTGTTATGCTCTTCGTTTTGTCGTGGTGTTGCTGAGTTATTGGTGCGTGTTGAGTGCTTCGCGTGTCTCCGTTCTCTAGTGTGTGCTAGGTGTCGCTTCGTTCTATGGTGTGCACGTGTCGCTTGGGTTGATGGGAGTAGGTGCTGTCAGTGGTTGCTATGTTCGTATGTGGTTGACTGTGTGTTCGTTGCTGCTGCTGATGTCGGCTCATCTGACGTATGTGTGTGACTTAGCTTCGTGTGTGCTCACTCTCGGCCTGCTGCTGCTGTCGCTTCGTTTCTGCAGTGCGTGCCTTGTCTGTGCTCGTATGCTTGTCGTGTGTCTCTCTGCTCTTGTGGTGCTCGTGTCCGTGCTGTCGTATCTAGTATAGCGC | |||||||||
gi|88296325|gb|CI669101.1|CI669101 CI669101 Oryza sativa (japonica cultivar-group) callus 100ppm ZnSO4 for 1week Oryza sativa Ja AGAGAGTGAGCACACACGGTG EST sequence (targeted fragment marked with yellow): TGTGCTGTGTGTGCTCTCTCTCTCTCCATCCATCAGGCCTAGAGAAGAGGAGAGACAAGCGCCTCCTTCTCCTCATCTCCTTCCTCCTCCTTCCCCCTTCTTCTTCTTCCTCCTCCTCCTCTCTCTCTCTAGCCATACTCTCTCTCTCTCTTCTCCACTCCTCTGATCGACTCCGNTTCGATCCCCGCCGACGACCCCCCCCCCCCCGGGGTTTATTTTTTTTTCTATCTCTCTCTCTTCCCTGATTCGGTGCACGCACGCGCAGGAAGGAACCAGAGCTATCTATCGTGATGTCCACTCTCGCGGCGCATCCACCGTTGGGGCCAGCGGCGGCGGCGCAGGAGAAGGCGGCGAGCCGGAACAAGCGCAAGTACCGCGCCGAGCCGCCGTCCGCCGAGCTGGGGTCATTCGGGCTGGAGTACCCACTGACGGCCGA | |||||||||
gi|88338715|gb|CI644172.1|CI644172 CI644172 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro AGAGAGTGAGCACACACGGTG EST sequence (targeted fragment marked with yellow): TTCTCTCTCTGTCAGCCATTTGATCTCTCTTTCTCTCTTTCTCCCTCATGTGTTATACTGTTCTCTCATATCTATCTTCTTTGAGGTAGTAATATACTTGAGCAAATTAAGCTGCTTAATTATTTGTGTATGATGATCAGCTGCTGATCCGGCCTCATTTCTTGCATATATGACCACAACCACATACATGCTTGTTCATTTTTTTTCACAAAGAAAGAGAACAGTTTAATTTAATTTCTTGGGGTTTTTGGATCAGTTAATTTGTCTTGAGAGGGGAAGAGATCTCTATGGGTTTTGGAGGTCTGACAGAAGAGAGTGAGCACACACGGTGCTTTCTTAGCATGCAAGAGCCATGCTGGGAGCTGTGCGTGCTCACTCTCTATCTGTCA | |||||||||
gi|66916719|gb|CX103567.1|CX103567 RECm4575 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl AGAGAGTGAGCACACACGGTG EST sequence (targeted fragment marked with yellow): GGTGCAGGTACGGTCGGAATCCGGGTGACCACGCGTCGCCCACGCGTCGCTCGCGAGCTCAGCGCCGCCGCCGTCCAGCTGCTTCTTCCGCCGCATCTCGCCGCCGGGTTAGGGTTTGGGGATGTCGGACCGGCAGCAGTCGGAGGAGCCGGAGGAGCAGGTGGACCTGGAGGGTGACGACGACAACGACGTCATGGACGACGACGAGGACGGGTACCGCCGCCGCCGCCGCCGCGAGGACTCCGACGAGCCGGACGACGACGAGGAGGATCCCGAAGTCGAAGGCGACGGTCACGGAGATACAGGGACCGCGGCGGGCGAAGGAGGAGCGGATGAGATGGACAAGGCCGCCGCCGGCGGCGGCGGCGGCGGCGATGGGCCTGAGGACGATGACGAGAAGCGGAAGTGGGATGAGCTGCTCGCTCTGCCGCCTCAGGGCTCCGAGGTGTTCATCGGCGGTCTCCCCCGCGACACCACCGAGGAGGACCTCCGTGAGCTCTGCGACTCGTTCGGCGAAATCTACGAGGTGAGGTTGATGAAGGATAAAGAGACCAAGGAGAACAAAGGATTCGCATTCGTCAACTTCACCGCGAAGGAAGCGGCTCAGCGTGCTATCGAGGAACTGCATGACAAAGAACACAAGCGGAGGACACTGCGTGTGCTCACTGTCGCAAGCAAAGCACAGGCTATTCGTTGGTAATGTACCCAAGGGGTTGGGTGAGGAGGAGCTGAGAAAGATAATCCAAGGGAAGGGGCCAGGTGTTGTCAACATTGAGATGTTCAAGGATTTACATGACCCAAGCCGTAACCGTGGGTTCCTCTTTGTTGAGTATTATAACCACGCTTGTGCAGACTATGCCAGGCAGAAATTGTCAGCACCAAACTTTAAGGTTGATGGTAGCCAATTGACCGTCAGCTGGGCTGAACCTAAGGGTTCATCAGATTCTTCTTCTGCAGCTGCCCAGGTGAAGACTATATATGTGAAGAACTTACCAGAAAATGCTTCTAAAGAGAAGATAACGGAGATCTTGAACAGCCTGGGGGAGGTACAAAAGTCGGTTGCCACCTTGCTAGGGTGGGCCTAGAGAGATATGCGTTGGTCACTTGCTTGAAAGATCAGTGCCGGGGCCGTAAGGAAGCGAAATTAGTTATGGGCATGGAGTACAGGCAACTTGGGTAGAACGTTACCTCACCGGGACCATTCCATCCTGGGGCGTGAACAGGATGACGGCGAAACCTAATGGGACAGAAGATCGCAAGTATACAGCCCCGGCGGCGGTCATTACAAATGCAGAGGACGAATACAGAAGAAGAACGATAAAAGAAAATGACAAAAACGGAAGAACACGAAGGACAGAAGAGAAAAAC | |||||||||
gi|88377894|gb|CI638028.1|CI638028 CI638028 Oryza sativa (japonica cultivar-group) callus UVB iradiated callus, immid after trea AGAGAGTGAGCACACACGGTG EST sequence (targeted fragment marked with yellow): ATGTGTTATACTGTTCTCTCATATCTATCTTCTTTGAGGTAGTAATATACTTGAGCAAATTAAGCTGCTTAATTATTTGTGTATGATGATCAGCTGCTGATCCGGCCTCATTTCTTGCATATATGACCACAACCACATACATGCTTGTTCATTTTTTTTCACAAAGAAAGAGAACAGTTTAATTTAATTTCTTGGGGTTTTTGGATCAGTTAATTTGTCTTGAGAGGGGAAGAGATCTCTATGGGTTTTGGAGGTCTGACAGAAGAGAGTGAGCACACACGGTGCTTTCTTAGCATGCAAGAGCCATGCTGGGAGCTGTGCGTGCTCACTCTCTATCTGTCAGCCGTTCACCATGCCCAATATGATTAATCTCCTTCTCTCAGTTGACAGTAATTT | |||||||||
gi|88570659|gb|CI662032.1|CI662032 CI662032 Oryza sativa (japonica cultivar-group) callus 100ppm ZnSO4 for 1week Oryza sativa Ja AGAGAGTGAGCACACACGGTG EST sequence (targeted fragment marked with yellow): TGTGCTGTGTGTGCTCTCTCTCTCTCCATCCATCAGGCCTAGAGAAGAGGAGAGACAAGCGCCTCCTTCTCCTCATCTCCTTCCTCCTCCTTCCCCCTTCTTCTTCTTCCTCCTCCTCCTCTCTCTCTCTACCCATACTCTCTCTCTCTCTTCTCCACTCCTCTGATCGANTCCGCTTCGATCCCCGNCGANGACCCCCCCCCCCGGGGTTTATTTTTTTTTCTATTTCTCTCTCTTCCCTGATTCGGTGCACGCACGCGCAGGAAGGAACCAGAGCTATCTATCGTGATGTCCACTCTCGCCGGCGCATCCACCGTTGGGGCCAGCGGCGGCGGCGCCGGANAAGGCGGCGAGCCGGAACCAGCGCAAGTACCGTGCCGAGCCGCCGTCCGCCGAGCTGGGG | |||||||||
gi|112785906|gb|EE591653.1|EE591653 NEW_RNG28-H02 Rice mixture of leaf, root, panicle Oryza sativa Japonica Group cDNA, mRNA seq AGAGAGTGAGCACACACGGTG EST sequence (targeted fragment marked with yellow): CAATGGCGCATGCTAAGAGCAATGGATATCAAGCCAGTGATGCCACCAGCTCGCTCGACGCTCTGAGAGAGCTCTACGGCAACACCCTCGCCGTCGTCAAGTCCATGGCTCTCAAGGCCGCCATGGACCTCGGCATCGCCGACGCCATCCACCACCACGGCGGCGCCGCCACTCTGTCCCAGATAGTCACCAGGGTCGCGCTCCACCCGTCCAAGGTTCCATGCCTGCGTCGCCTCATGCGTGTGCTCACTCTCTCCGGCGTCTTCGCCGTCCAGAAGCTGGCGCCCGGCGATGCCGCAGCCCCTGCCGACGAGGCCGAGGCGGCCGTCTACGCGCTCACGCCGGTGTCCCGCCTCCTCATCGGCGCCGGGAACCAGGGACACATGATGTCCATGCTGCTCCACCCGAACTTCATCACCCCCTTCTTCCGGATCAGCGACTGGCTCCAGCGCGAGCTGCCTGGCCCGTGCATCTTCAAGCACACCCATGGCCGGAGCTTGTGGGAGATGGCCGACGACGACGCCGCGTTCAACACGGTCGTCAACGACGGGATGGCGTCGGACAGTATCTTCACGATGGACATCCTGGTCAGGGAGCATGGCGAGGTGTTCCAGGGGATCAGCTCGCTGGTCGACGTCGCCGGCGGGAACGGCACGGCGGCGCAGCCATCGCAGGGCGTTCCCGGAGGTGAAATGCAGCGTGATGGACCTCGCCCACGTCGTCGCCGAGGCTCCCGGTGGCACCGGTGTCGAGTTCATCACCGGCGACATGTTTGAGAAGTGTTCCACCGGCAAACGCTGTCTTCCTCAAGTGGATTATGCACGATTAGGGTGACAACGACTGTGTCAAGATACTGGGGAACTGTAAGAAAGCCATCCCAACTAGAGACAAGGGAGAAAAGGTGATAATCATGGATATAGTGGTTGGGACAGGGCCGTCCGACCAAAAGCATAGAGATGTGCAGATCTTGTATGATGCATACATCATGTTTATCAATGGTGCCGAGAGAGATGAGCAAGAGTGGAAGAAGCTTTTCCTTGAAGCTGGGTTTAGTGACTACAAGATTATGCCAATTATGGGATTCAGGTCAATCATCGAAGGTCTACCCTTGAAGA | |||||||||
gi|58604963|gb|CK032996.1|CK032996 35430rsiceg_3504.y1 Oryza sativa cv. 93-11 tillering whole plant cDNA library Oryza sativa cD AGAGAGTGAGCACACACGGTG EST sequence (targeted fragment marked with yellow): GCACGAGGCTTCTCTCTTCTCTTCTCCTCATCCTCCTCTTTAGCTTCCTCTCGCGCTCGCCGTGGTGCTCTCTCTCTCTATCGGGCGCGCGCCTTTCTGTGTTGGTCGTCTCTTTCCTCGCGTGCTCTGCCGCTGCGCAAGAATCAAAAGGCGCCGGCCACTAGAGAGAGTGTGTGTTTGTGTGTGTGTGTGGCTTGAGTTGAGAGTTGAGAGACCAATCGACCATCGGCTGTGATCTCAAAAGAAAGAGAGGGGCAAAGCGAAGTGGGCAGACTTGGGCGGCAATCCTTGCGAATCATCAAGGGATTCTGTCTTTTCTTTGGTGCGATTCGATTGTTTCTTTGTAGGGGGAAGGGAGAGAGGAGGGGGGGTTTTTGGCAATTGGCATGGAGGAGGCGGAGGAGATGCAGGTGGAGAGGATGCAGGAGGAGGTGGAGGGAGGCGGCGCGGATACGGATAAGCTCAGCTACGAGATTTTCTCCATCCTCGAGAGCAAGTTCCTGTTCGGGTACACGGACCCGCACCAGCTGTGGCT | |||||||||