| mature miRNA: AGAGCTTGTTTGGTAGCCAAG species: Populus tremula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|38591037|gb|CK106712.1|CK106712 UB30CPH10.5pR Populus active cambium cDNA library Populus tremula cDNA clone UB30CPH10 5', mR AGAGCTTGTTTGGTAGCCAAG EST sequence (targeted fragment marked with yellow): CTGGCATATGGCGGGACGGAATGAAAGCTGATTGCAAGCCAGTGGCCATTGGATACCAAACAGGCTCATTTGCTTATAACTATTTATCAGAGAATCTTTACATAGCTCGTTCAAGACTTGTCCCCTTAGGCTCCCCAGAAGAGTATGAAAGTGCATTACGGCGAGGGCCAGGTGACGGAGGGGTGGCAGCATTGTAGATGACTTCCATATGTAGATCTGTTTCTTTCAAGCCAAAAGGATTTTGGGATCATTGGGCAACCATTTACCCGGGGTGGATGGGGATTTGCTTTTCGAAGGGAATCTCCGCTTGCTCTTGATATCTCTACAGCAATTTTGAAACTTTCTGAGGATGGGGAGCTGCAAAAGATCTATGAGAAATGGTTCTGTAAGATGGGATGCCATGGAGAGAAAAAACACGGCAACGAGCCTAATCAACTCAACCTGATCAGCTTCTGGGGTCTATACATTCTATGTGGTGCCATCGCTCTCACTGCCTTTTTTTTGTGTTTGCTGCTACGAATGGTTCGCCAATTTTGTGCGCTAATAAAACGTAAGACAAGGATGGGGCTCTTCCTCTCCGTGCCCTCAATTT | |||||||||
gi|23984898|gb|BU820226.1|BU820226 UA52DPF08 Populus tremula cambium cDNA library Populus tremula cDNA 5 prime, mRNA sequence AGAGCTTGTTTGGTAGCCAAG EST sequence (targeted fragment marked with yellow): GTTAAATTTTCATTGTTTAATCTTTATCCTTTTACTTTTGGATTCTAAACAAGCTTTTATTTTTAAGCAGCAGTATTGTCTGAGGATGCTGAAGCTAAAGTCAGTTCTCAGTCGCCGCCAGAACCATTCATCTCTAATGGACACGTTAAATTTCCGAATCATTATAAAGTCCCTGAAGCTCTAAAGAGTGGTTTGACATGTGGAAGCTTTGATACTAATTCTGGACCAGGAGCAAAATGCAGCAATGGTATTGATGGTGACATTAACTCTATGCATGCTGTTGAACTTGCACATCTGACTGATGAAACTACCATGGAACCTTCTAGCAATGATAGTGGATCAACACCTATGCAAGTTAATCATTCTGATCAACCAGAGTCTCCTATACATGCGCTTGAAAAAGTATCAATATCAGAGGGCAATGTTGAACCTAGTGCAGACTCGAGGGCTGTTCAGCCAAAGCAGGATGAGATGTTGCTTCCAGAAGGCCATCAGAGCTCCACTGTTCAAATTGCACCAAACTATGGTTTTGGGATCCTGCCAACCATGCATGCTGCTCACCTTGTACCAATCGCAGGACATGAGACACAGGCATGGGATG | |||||||||
gi|38590392|gb|CK106067.1|CK106067 UA52DPF08.5pR Populus dormant cambium cDNA library Populus tremula cDNA clone UA52DPF08 5', m AGAGCTTGTTTGGTAGCCAAG EST sequence (targeted fragment marked with yellow): AATTTTCATTGTTTAATCTTTATCCTTTTACTTTTGGATTCTAAACAAGCTTTTATTTTTAAGCAGCAGTCTTGTCTGAGGATGCTGAAGCTAAAGTCAGTTCTCAGTCGCCGCCAGAACCATTCATCTCTAATGGACACGTTAAATTTCCGAATCATTATAAAGTCCCTGAAGCTCTAAAGAGTGGTTTGACATTTGGAAGCTTTGATACTAATTCTGGACCAGGAGCAAAATGCAGCAATGGTATTGATGGTGACATTAACTCTATGCATGCTGTTGAACTTGCACATCTGACTGATGAAACTACCATGGAACCTTCTAGCAATGATAGTGGATCAACACCTATGCAAGTTAATCATTCTGATCAACCAGAGTCTCCTATACATGCGCTTGAAAAAGTATCAATATCAGAGGGCAATGTTGAACCTAGTGCAGACTCGAGGGCTGTTCAGCCAAAGCAGGATGAGATGTTGCTTCCAGAAGGCCATCAGAGCTCCACTGTTCAAATTGCACCAAACTATGGTTTTTGGGATCCTGCCAACCATGCAAGGCTGCTCACCTTGTACCAATCGCAGGACATGAGACAACAGGCATGGGATGTTTCTC | |||||||||
gi|38581193|gb|CK096868.1|CK096868 UB30CPH10.3pR Populus active cambium cDNA library Populus tremula cDNA clone UB30CPH10 3', mR AGAGCTTGTTTGGTAGCCAAG EST sequence (targeted fragment marked with yellow): ATTATGCCGGGACCGGAAATGAAAGCTTGATGCAAGCCAGTGGCCCATTGGATACCAAACAGGCTCATTTGCTTATAACTATTTATCAGAGAATCTTTACATAGCTCGTTCAAGACTTGTCCCTTAGGCTCCCCAGAAGAGTATGAAAGTGCATTACGGCGAGGGCCAGGTGACGGAGGGGTGGCAGCCATTGTAGATGAGCTTCCATATGTAGATCTGTTTCTTTCAAGCCAAAAGGATTTTGGGATCATTGGGCAACCATTTACCCGGGGTGGATGGGGATTTGCTTTTCGAAGGGAATCTCCGCTTGCTCTTGATATCTCTACAGCAATTTTGAAACTTTCTGAGGATGGGGAGCTGCAAAAGATCTATGAGAAATGGTTCTGTAAGATGGGATGCCATGGAGAGAAAAAACACGGCAACGAGCCTAATCAACTCAACCTGATCAGCTTCTGGGGTCTATACATTCTATGTGGTGCCATCGCTCTCACTGCCTTTTTTGTGTTTCTGCTACGAATGGTTCGCCAATTTGTGCGCTATAAACGTAGACAGTTGCGCTCTTCCTCTCCGTCCTCAATTTCATCAAGCACTCGCTGTTCTCATGTCATCTATCATTTTTTCGACTTCATCGATGAGAGAGAAGAAGCTATCAAGAAAATGTTTAATCATTGTGAGCATCCTCACCCTCAGGCTAACCCGGACACGCATGTCCATTTCAAGGAAATTGAAGGATCCGCCATTGGTGCCATTTGAAGAGCTTGCTATTGAATAGAATTTAGTCCCTGTACATAAGCATTATATTATATGTGTAATTTAGAAGTTGG | |||||||||