| mature miRNA: AGAGGGACCTAAAGTGAACTT species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|29666932|gb|CB663207.1|CB663207 OSJNEd07O11.f OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd07O11 5', mRNA sequence AGAGGGACCTAAAGTGAACTT EST sequence (targeted fragment marked with yellow): GCCACTCTCCTCGTCTCCTCCATGCCTCAGAGTGATTAGTTGAGAGGAGGAATCAAGAATCGAGGGATAGGGTGAGGGAGATGGAGATCGAGGAGGCGGGCGGCGCCGGGGAGGATGAGCTGGAAATGGAGGCTCCGAGCGTGAGCACGGTGGCGATTGCGGTGAACGGGAGCAGGAACAGCAAGCACGCACTCAAGTGGGCTCTCGACAAGCTCGTCCCCGAAGGAAAGGTCCTCTTCCAGATCTTGCATGTCCGCCCCACCATCAAGATGGTGCCAACTCCAATGGGCAATTTCATTCCAATCACACAAGTGCGTGAAGACGTAGCAACTGCATACAAGAAAGAAGTGGAATGGCAAGCAAACAATATGTTGCTTCCTTACAAGAAGATGTGTGCTCAGAGAAAGAAGCTGAAGCTGTTTTACTCGAATCTGACGATGTGCCTACTGCTATAAGCGAAGAAATCAGCAAATTCAGTGTCTGCAAGTTAGTTTTAGGTTCTTCTAGCAGCATATTCCGAAGGAAAAACAAAGGAAGTAAGACTGCGACCAAGATCTGTGAGTGCATTCCAAGCTTCTGCACAGCATACGTTGTCTCAAAAGGAAAACTATCATCTGTGCACTCAGCTACATCTGATGCCATCGGAACACCTGAATCCATTTCTTCTTCAACTGTTTCATCCCCAAGCTCTAGAAGCTTTTCATCCAGTGTACCCTCACAATGGGGAGACACATATGGGTCAGCAAATGTGTCATTCCACCAGCCATCTCT | |||||||||
gi|88484131|gb|CI421402.1|CI421402 CI421402 Oryza sativa (japonica cultivar-group) 4 days after transferring callus Oryza sativa AGAGGGACCTAAAGTGAACTT EST sequence (targeted fragment marked with yellow): GGTCCCTCAATTTGTCCCAACTTTCAAAGGAAAAAGTACACCCAAGGTCCCTCAACTTGTCATCGAGTTACAAAATCGTCCCACAACCGCAAAACCAGATATATGATATCTCTCAACTTACAAAACCGTTCACTTTAGGTCCCTCGGTGGTTTTGACCGCGGTTTTGTCTGACGTGACGGCTGAATCAGCGTGGAACCCATGTGGGCCCCACATGCCAGGATTCCACGTCATCACCCTATCTCTTTCCCCTCCTCTCCCTTCCTCCTCTCTCTCTTTCTCTCTCTCTCTCACTTTTCTCCTCTTGGGCAGGCCGGCCGGTGGGTGGGGAGGTGGTCGCCGACAGCGGGATGCAGTGGCTGCGGCGCGTACCTGGCCGTGCCGCCGGGGGCGCGGTCGGTGCGATGCGCGCTCTGCCATGCCGTGACGCGCG | |||||||||
gi|33661435|gb|CF292402.1|CF292402 30DGS--01-D13.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza sativa Japonica Group cDNA cl AGAGGGACCTAAAGTGAACTT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTAAACCAAGTTGATTCTTTTGGGGCATATTTTCAAACGATGTTACTACAGGGATACACAAAGTAGAGTGCAAATTCCAGGGAAAATAGGTACTACGACAAGAGTATAATCCTGGTTGTCCTGCATTTCACTTTGTGCTTCGAACTGTATATAAAACCGTGGGCTGAAGTTGTGTACACCGGCCCAATTAAGTTGTGAAGACAAGATACTCCGGTGGGAAAGGGCTACTGGAACGGCAATTTTGGGCTGGAAGGTGCCGACCCAGTGCCGCCATGTCTAAATCGCCAAGGCCCACTTGCGGGATATCAGTTAGGATGATAAGTTCACTATAGATCCCTCATCTTGACGCCGAGTTTGAATAACGTCATTGAACTGGAATACAAGATATAACGTTGCCCTCAACTTGCAAAACCTGTATATCCAAGATCCCAGGATAGTATAGTTCCCGGTTTTGGTTAATGTGGCAAGTGGGCCCCACATGTCAGCGGCCAACTCTTCTTCCTTCTTTCTCCCTCCCTTTTCCATATCTTCCCCATATCTGAGATTCTCACCAAGCTTTCGAGCAGAGGCCGATAGTAGGGTAGCGAGCGGCGCTTGAT | |||||||||
gi|117237215|gb|CT861799.1|CT861799 CT861799 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD AGAGGGACCTAAAGTGAACTT EST sequence (targeted fragment marked with yellow): TACACGTCCGCGAAGTGGGGATGCGGGTGGGTCATTCACGTGGCGCGGAGCTGCGGGACGACCCGGTCAGCGCCACGGCTGCACGGTACCCAATCGGTCCCGTGTCGTAGAGCCGGCCCAAGGCTATCGGTCCCGTAGCTTCGCACCGTAATGAATGACTCACACGACGTCCCCACTTCACGGACTTCGCGGAATAGGGTTCAGGGAGGACGTTCTGACGGTGTGCTGCGGAGGGGGCGGGCCGTACAACTTCAACGAGAGCGTGGCGTGCGGCGGCGCGGCGGCGACGGCATGCGAGGACCCGTCGGCGTCGCTGTACTTCGACGGCGCCCACTTGACGGAGGCGGGGTATCGCCACGTCGCGGATGGATGGCTGAGCAGCATAAACTCTTGTCTCTGTGCCCAACCGCACACGATGAAACTTCGTAGGGCTTAATGGGCCTTTTGTTTTGGGCCTTAGGGCCATGTCCCAGGTTGCCCGGTGGGCTGTGGGTTGGGGGCGGAATAAGTTCACTTTAGGTTCCTCTT | |||||||||
gi|87034887|gb|CI188690.1|CI188690 CI188690 Oryza sativa (japonica cultivar-group) root of seedlings Oryza sativa Japonica Group AGAGGGACCTAAAGTGAACTT EST sequence (targeted fragment marked with yellow): GTTTGGGGGTTCGGAGAATAAAGAAAAAAGTACACCCAGNGTCCCTCAAATTGTCATCGAGATACAAAATCGTCAACCCAATAGATACCGGGCGTCCCTTAAATATCAAAACCGTTCGCTTTAGGTCCCTCGTGGTTTTGACCCCGGTTTTGTTTGGCGTGGTGGCCGAGTCAGCGTGGGACCCACATGGGCCCCACATGTCAGGATGCCACGTCATCTGTCCCTTCCTCTTCTCTCCATTTTCTCCTGGGCAGGCTGGCCAGCGTGTTGGGGAGGAAGTCGACGGGGCGAGGCGGGAGAGGAGGATCGGCGGCGGTGGCCGGCGACCGGCGATGCAGCGGCGGTGGTGACCACGCAGGAGCAGGTGGGTCGGCGGAGCGGGCAGGTGACGACCATCATCTCCGAGCAGTCCCCGCCGGACGTCGACGCCAGCATCGCCACGTTCCGCTGGAGGGAGGCGCTGCAGCCCGACGCCGAGGTGGGGCACGAC | |||||||||
gi|88723523|gb|CI747033.1|CI747033 CI747033 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro AGAGGGACCTAAAGTGAACTT EST sequence (targeted fragment marked with yellow): GTGTGTAGAGAGAGAGCTCGAGCTCTATTTAGGTGACACTATAGAACCAGGTGGTGAAAGAAGATAGAATATAGGAGGGGATTAGCTAACAAGTGGGCCTACTTTATTTTTTAAATTTATTTGATGACTGGGATGCCACGTAAGCGCCACGTCAGCGAAACCGCCTTCCAAAACCGTCGAGGGAGTCAATTTGCACTGGTTTTAAGAATTATGAGGTCAAGATATCCGGTTTTATGGTTTAGGGTCAAGGATTAGATTTCGATCAGTCACAAAATGAATTTATTCCGGCAGACTGACAGAAGCAAAAATAGGAATAAGTCCATTTTAGGTCCCTCAATTATAGGCTAAGTTTAATACCCAATCCTCAATTACATGGCGT | |||||||||
gi|86545845|gb|CI186051.1|CI186051 CI186051 Oryza sativa (japonica cultivar-group) root of seedlings Oryza sativa Japonica Group AGAGGGACCTAAAGTGAACTT EST sequence (targeted fragment marked with yellow): TTTTGAGGGAACACAAATTTTGGTATTTTGATTCACAAACTCGACGTTAAGATAAGGGATGACAAGCGAACTTATCCCTATTACAAGATCGCACAGCCCGTGTGTCTACATCTACTGTCGGAATAAGTTCACTTTAGGTCCCTCTATTTGTCGGTCAGTCCGATTTTCGTCCTTGACCACAAAACCGGGTACGACCCATCCCCCAACTTACGAAACCGGGCAAACAAAGTCCCTCGGCAGTATGGAGGGCGGTTTTGGCCGACGTGGCGTCTATGTGGCGCCTACGTGGCTCCTTTGACTAGGTCTTCGTCCCACGTGGCATTGACGTGGCGATTACGTGGCAATTTTATCTCGAAAAAATAATAAAAATAGTGGGACCCATATGTCAGCTACACAAAAAATAATTTAAAAAAGGTGGGGCCATGTGGTCCCACATGTCAGCCTCCTCTCTATCCCCCTCTCTCTCCCCCTACACTGCCAGG | |||||||||
gi|29615410|gb|CB620422.1|CB620422 OSIIEa05K03.f OSIIEa Oryza sativa Indica Group cDNA clone OSIIEa05K03 5', mRNA sequence AGAGGGACCTAAAGTGAACTT EST sequence (targeted fragment marked with yellow): GTGAGGGAGGAAAAAAAGAGTGAGAAGAAAGTCGAGATCATGTCCCTTTGGAAGGTGCTCCTGATGGTAATCGCGCTCATCTGCGCCCTGCATACTACTTCAGGGAGACCTCCCGTCGTGGGATATCCTGCTCCTCGTCCCAACAGGAGCTCGGGCACATGCTACGAAGGCTGCAACCCTCCAGGTAGAGATGACCCTTTGCTACTCTCCAGGTAGAGATGGCAACAGAGATCCATAACCAGAGACTCTATAGGTTTTTATTTTATTAGGAGTCATACATGATCTAATTCTTGTATCTATGGATTTATCAACGGAAAAAAAAATCCTTACATGTTGGATAGATGGGTATCAGTTCTTTAGCCACTCGTACCCCTTACCTATGGGTAAAAAATACCTATATGCTTAGCGTGATAGTTTACTTACTTTGAACGTTAATGTATGGTTTAATACTAGTATGGTTTATTTACTTGTTATATATGGTTTAATTCTTGCATGATTTGTTTACTTGTATTTGAATGCTAATACTAAAATCAAGGTTACTTAATATGATGTCGATAGTTGTTATCGTAATCGTTTAGTTATAGATAAAGGGGAAGGGAGAAGTTCACTTTAGTTCCCTCAATTTATCGTCGAGTCTGAAATTTATCCTTGAAATGCAAAACCGGGTACAACACATCCCCTAGCTTACAAAATCAATACAAATAGGGGGTCTCTCGGCAATATTGTGCCCAGTTTTGGTTGACGTGGCGTCTACGTGGGATCCTTTAACTAGGTGTTCGTTCCACGTGGTATTGATGTGTCGTTTACGTGGAAA | |||||||||
gi|86503952|gb|CI146585.1|CI146585 CI146585 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa AGAGGGACCTAAAGTGAACTT EST sequence (targeted fragment marked with yellow): TGGTCAAGCAAAAAAGGCTGTTTACGTTTTGTTCGCCGNGTTTTGGTGTCCGCATTGAGCGTGAAGATTGTTTATCCCCGGCCGAAGAAGGCGATTTGCTGGAGCTAGAGATAATGCCGGAAGGAGAGATTAATTTACAAATTAATCTTAGTCCATAGAGTAGACGATAGTCAATCGTTAGGATTGGCTTAAATCCAGACGATAGAGATGAGGCCAAACTCCAGAGAATCGATTGGCACATGGATTAGGCTGTGATAACTGATAAGGGTTTGTAACTTGTTCCCCGCACTAAAAACAAGACAGCTCATTAGAGTATTAATTAAGTATTAACTTAAAACAAATTAAAAGAATATTAAGTTAATTTTTAAAAGAAACTTTTTATACAAAATACATCGCTTAGTGCTTACTAGCTCCGTCCCAAAATATAACAACTCTTGACTATGAATCTAGACACATATTATTATCCAGATTTATAGTTAAAAATATTTATATTTTGGCATGGAGGGAGTACCTGTGATTCCAAACACAACCCGTAGAGAGTAGAGATAGTAGAGGTAAGCAGTGTTCTTGTGCTTGAATAAGTTCACATTAGGTCACTCTATTGGTCACCCAGTCTAATTTTCATCCTCAGTCCAGAAAACCGGATACAATACATCCCTCAACTT | |||||||||
gi|58662623|gb|CK051309.1|CK051309 56031rsicek_10428.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G AGAGGGACCTAAAGTGAACTT EST sequence (targeted fragment marked with yellow): CTCCAAGGTTCCTACAAGATGGCATGCATGATTGGCAGATGAAGCATCGTAGAGTTAGCTTTTGCTATTGCTTGTAGTGGCATTGTTCAGTCAAGTCTCGTTGGTGAAATGGAATGCAAGGGCTTTTCCTTTCTGGTGTGGGATGATGATGTTCTTTGTTGCAGTTGGCTTGTGAACATTTTAGGAATAAGTTCATTTTAGGTCCCTTAACTTTAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|86903283|gb|CI313646.1|CI313646 CI313646 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone AGAGGGACCTAAAGTGAACTT EST sequence (targeted fragment marked with yellow): AACTTCAACTCATTCTCCCTCAATGCAGTTAACCGACACTGAAGACTTGAAACATTTGGTTATATGTAGTCTGTAAATGTCATCTAGAGTATGTACTAATCATCATAAAAATCCCAAAGCAGAAAAAAGAATGATGATGAGAGAAGCTCAAAAACATTTTTCTCACGCCTGGATGGATGGGTGGATTTGGATGTTCTAAAACGGGGATAATCACCAGTCTTGGTGACCACTGTTTGCAACCCAATGTCTCTTGTGTGACTGGCATGTATCATTAAAAACGGGTCAGTCATCTTATTGCGGTGGTTCAGGGGCGTCGTCGTCGAACTCGTTCATGTGGTCCAAGAGATAGTTTGCGGCCAACAGCTCATCCTTGTTGCACGCGAAGAATACCTCCAGGAACAGATCGCGATCAAACCCCATTTGTTCCAGACGTTGTATGGCTTCGTTCTCCTCAGGTGTGACAGCCACTGTTTGAGGGATTCCCGCAGGAAACTGGTCTAGCAAGTTCCCTTAGGTCCCTCTGCAGG | |||||||||
gi|38480391|gb|CF964480.1|CF964480 8711rsiced_12368.y1 Oryza sativa cv. LYP9 trefoil whole plant cDNA library Oryza sativa Indic AGAGGGACCTAAAGTGAACTT EST sequence (targeted fragment marked with yellow): GCACGAGGATGGCCGAGGCGGAGCTCGACGGGTTCGACGCCGAGCGCGCCGCGCCGCTGCGACACCTCGGGCGGTTCATCGCCTACAGGCAGCATTAATTGATGGCTCGATGCGGCTAACAGTGCAACGAAAATTCAGCGCTTTCAATGATTTGAGCGACTCAAATCGAGACATATTTGTCAATTTCTGTACGTATATGATGGTAGCTTGGAGTACGGGGTATTTGTATACCGTTTGGTTGCTCAAGGAAATAAGTTCACTTTAGGTCCCTCAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTCGAGGGGGGGCCCG | |||||||||
gi|88960073|gb|CI381951.1|CI381951 CI381951 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone AGAGGGACCTAAAGTGAACTT EST sequence (targeted fragment marked with yellow): CTTTCATTACCAAAATTTGGCAGCAAACTAAATATAGCTATTTTTTTTTGGTAACTTTACCAAAATTTGGTAAGGTTTTTTTCGCATCAAAGTGAACAGGCCCGTAAATCCATTCGCAGCCTAGTACCGAAAAGGCACCCGTGGCGCAACAGTGCTAGCTAGTTCAACTAACTATACATGATAGCAAGTTAGCAACTGCAGTGGAAAGGAATAAGTTCACTTAGGTCCCTCAATTGTTGAGTCTAAAATTCATCTTGCACCGTAGAACTAGATATGACACACCCTTCCCAAGTCGATTTGGATGAGGGTTTCTGCTAACGTGGTGCTGACAAAATTCAGAAATATTGTGGAACTCACATGTCAGTGAGTCGGTTACCCTCTCTCTTTGCCATCTTCTCTCCCTTCCTCTTCTCTCGCATCGTCGGCGTCGTCTGTGGCGACAATGGATGCACTGTCC | |||||||||
gi|44678016|gb|CR291450.1|CR291450 CR291450 Oryza sativa library (Han B) Oryza sativa cDNA clone y750c09p3, mRNA sequence AGAGGGACCTAAAGTGAACTT EST sequence (targeted fragment marked with yellow): TGGCGCCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTTAAATAATTTTTTATTCAGGAGAGTAGGGAACTCGTAACACACGAACACAACCTATACTCCAGATCGGGCTGATGTATATCCACATAGCAAAGCCCACTAGGGCTTTTCCTTAGTTCAGGCATGGCATAAGTTAACTTTAGGTCCCTTATCTGGTTGCTCAGTTCAAGTTTCATCCTTGCAAGGGCAAAACCGGAGAAAACGCATTCCTCAACTTATAAAACTAATGTAAAAAAGGTCCCTCAATAGTATTGTCCTGCTTTCCGCTGATGTGGCGCCTACATGGCAGTACAAAATCTCCGCTATAGCTGCCCCTTCCTCGCCAGCTTGCCGTCTTCCCGTGGACTGAGATGGTGAGCTCACCGGCTGGCTCTCCTTCTGTCACTGCTGTCGGCGCGGATCGAGGTTCCCTCCCCGACCGTCGCGATAGGATCCCAAGGGAACGCCACGCAGGCCGATGGACCTCGAGCTAAGCGCGGATATGTTAAGAAGAAGAAGACCACAAGGGGCATTACCCAAACGGGGGGGGACAAAAAACCCACAAGGCGAAGAAGGGAAACGAAGATACCTCAGAGAGAGACAAGAGCCTAATCCACAGTATCAGTATGTCGTNCAGGAGAGGACCCATAATTACGACCAGCTTGGCCAACCGGGTAATTGTTATTAGAATTGAAGTCACGACAAATGAGAACAAAAGGGAGACGGGGAGAACTAATTATTTCTTTTTGGTTTTTTCTTTTTTCTTTTTCTTTTTTTTCTTTGCTTTTAGTAGCAACAAGAACAAAAATAAGCACAAATAGATAAAAACAGAAGTACAAGACAGCACAACGAGCAGAAAAAGAT | |||||||||
gi|58667628|gb|CK056314.1|CK056314 54526rsicek_3951.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gr AGAGGGACCTAAAGTGAACTT EST sequence (targeted fragment marked with yellow): GCACGAGGGAGAGAGGAGAGAAGCTAGGGTTTTCGGCGGCCGGCCGGGAGAGGGGGGTTTTTGATCCTCCGATCTCGGCGCCCGGCCGTCCGATCGAAACCCTAGCTGATCGGACGGCCGGCGGCGGCCGGACCGAAATCGGCCCAAGTGGGGAGCGCGCGGCGGCGGCTTTCCCGGCCCAGGCCCAGGTTGCGGCCTGGGGGAGGGGAGGGGGCGCTTGCCCGCGCGCAAAGTGGCCATAGGCCGACCGGCAAAGGCCGGAAAAGTTCAATTTAGGTCCCTCGGGGCCGAAAATGAATAAAAGAGAACAGTAGCAATTTTTCCATTTTATTTTGTCGATTTTTCATGCAAATTTCAATAGAATTTTGAATAGATTTTTGCATGTTTTACCTCTGTTTAAATTTGAACCAACGGGAGAATTTTCACAGAGAGAGAATTACAGAGATTTTGCTACTGTTCATATGATTTTATATAGTCTTCCGCTGCAAATAGATGAAATTGATGAAAATTAGTGTTTCTAAAATTAAATTTCGAACCAACGGGAGAATTTAATTTTAGGAACATTAATTATGTGCTATGATGTTGTAATTTTC | |||||||||
gi|86502925|gb|CI145558.1|CI145558 CI145558 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa AGAGGGACCTAAAGTGAACTT EST sequence (targeted fragment marked with yellow): GAAACATTGGTTATATGTAGTCTGTAAATGTCATCTAGAGTATGTACTAATCATCATAAAAATCCCAAAGCAGAAAAAAGAATGATGATGAGAGAAGCTCAAAAACATTTTTCTCACGCCTGGATGGATGGGTGGATTTGGATGTTCTAAAACGGGGATAATCACCAGTCTTGGTGACCACTGTTTGCAACCCAATGTCTCTTGTGTGACTGGCATGTATCATTAAAAACGGGTCAGTCATCTTATTGCGGTGGTTCAGGGGCGTCGTCGTCGAACTCGTTCATGTGGTCCAAGAGATAGTTTGCGGCCAACAGCTCATCCTTGTTGCACGCGAAGAATACCTCCAGGACCAGATCGCGATCAAACCCCATTTGTTCCAGACGTTGTATGGCTTCGTTCTCCTCAGGTGTGACAGCCACTGTTTGAGGCATTCCCGCAGCAAACTGGTCTAGCAAGTTCCCTTTAGCTCCCTCTGCAGGTTCGTTGATTAAGCGCAGGAACTCAGCCTGGTTTTCCTGAATCAGTTGCAAAATCTGTGGATTTTGTTTCCCCAACTCTTGAAGCAAAGGCTGCAGAATTTGAGGGTTAGCCTGCACCAAAGAAAGCAAGCCACGGAACTGTGAATTGTTTCGCAGAACATCAAGATTTCC | |||||||||