| mature miRNA: AGATCATCTGGCAGTTTCACC species: Poncirus trifoliata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|188291273|gb|EY830635.1|EY830635 PT11-C2-300-058-F08-CT.F Poncirus trifoliata bark, greenhouse plant Citrus trifoliata cDNA, AGATCATCTGGCAGTTTCACC EST sequence (targeted fragment marked with yellow): GGCGGGACGCGGGGGGACAGCGCAGTACGGTCCGGATTCCCGGGTCGACCCGGGCTTCTTCACCCAGCTTGATCGCGGTCAAGCCGATGTCCATGTAATACGGCAGGTTCTCGGCGCGCACCTGGTAGAACACCGGACGGGCGTGGTGAATGTCGCACAGGTCGCGGAACTGCCAGATCATCTCGGCCCGTTGCAGGGTCGGGCCGATTGGATCGTACAAGGCCACCAGGCTGCGACCGCGACGAGCGTACATCAGGAACGCTTCGTCGTTGGGGTGAAACAGCAGGGCTTTGTCGCCGGTCAGTGCCAGGCCGCCATCGGGTTGCGCCGAGTTCATCAGGATCTTGGTGGCGCGCTCCAGTTCCTCAGGCGTTGGCAGGTGGATGATCGGGCGCGCGGTACGCAGCAGCCAGGTCAGCGACACCACCACCAACACCACGGCGGCGCCCAGCAACGAGCGCAGGCCGCGCGGGGCGTTGGCGTCGAGGGTGAACTGCCACCACAGCTGATGGCTGTAGGGCACGTCCTGGTAGGCGAACAGCAGCAGCCAGATCGACGCACCGAGTACGCACACGCTGGCAAACAAAGATACAGCGGCGAGAAGGGGCAGTTCGGTCAGGCGGCTGGGCGCGATAGAACAAGAGTCCAAATACCGCCAGGAGCCCCGCGGCACTGGGCATTAATGTATCCTTCTACCAAAAACAACCCCATGAACCATTCATAAATATGCACCCATCTCCCGACGTACGAGCGGCCTGATCCCTTTCGCCTGGTGGCCCCCTCCATATCTCCTCTCAGGAACCGCCGAGCACTAAGAAACCGTCCTTCTACGTACCGCTAAAAACTGGCGACACTCGCCTCCTCGCGCCCGCCATACTCGCAACTGCATACCCCTCTCGTATTCTTGTTACATACTGCTATTCTTTTGGCTCGACGTCCGCCCACATTTCGTTCCACTCTCCATCT | |||||||||
gi|57878325|gb|CX643496.1|CX643496 UCRPT02_68H10_b Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifolia AGATCATCTGGCAGTTTCACC EST sequence (targeted fragment marked with yellow): TTTTAGTACAGAATTAAAGATGGAATAAAAAGTCAAAGTGATAAAAGGTTAATTCCGTAATAGGAAACAGATATTGTAAACCCAAAATCTAATCTTACTGAATTACAGGAGGAAGTTCAGGTCACTGAAAAAAATGATATTACAAACGAAGAGAAGGAAAGTGAACAAGAGCGTTCAGGTCACAAGTATTGAACAAATCAATTACTCCACTTAAAGACAGAACAAGAGCGTTGCCACCCAGTGTGGATAGCAAGACGTTGAAACTGTTGTCCAGGCGCTGCTCACATCATCTTGAAGATATCCCCAAAAATTCCTTGCATGGGATTTCTACGCTTAACTCCAAAAAACTTCTCCGCTATGTCATCTAGCATCTCATTAAATGCCGGTTCCCTTTCTATACTTGCCTTGTAATTGGCTCTCAACATATTAAAGAGTGGTAAAGCATCTCTTTCCAACGTTTGCAAAACATAAAAAACAAACTGTATTAGATCTGATGGTTGGAGCTGAAGCTGCTTATTTTCCACTTGCTTCTTTACTTCGTCCATGATATAATTAGCATCTTTCATATTACCCAAAGATAAATACATTAGAATTGCTCGTGCAACTGCCAGATCATCTTCACCAGGATAACACTTGCCCATAAAATTGACTATAGTAGATGCAAACTTCTCTGGGTTGTTTCCTCTGACAAAATGAAATGATACTCTTGCCATGTCCAGTTCAGGGGATTCTGAATATAAATATTCAGCTAGCATAACATGAAGCTCCGGGGACCCAGTTTTAGGAGCTCCAAACTCTATAGACCACTTAATAGCAGCCTTTAAGAATGATGAGCAG | |||||||||