| mature miRNA: AGATTGACGAGTGCAAGAAGA species: Physcomitrella patens database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|208388255|gb|DC949283.1|DC949283 DC949283 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. paten AGATTGACGAGTGCAAGAAGA EST sequence (targeted fragment marked with yellow): TCAACNGGNNGGGGACGTGTACAAGAAGACGTNGGCGACNGACGGAATCGCGGGGCTGTACAGAGGTTCGCGATCTCNTGCGCGGGTATCATCGTGTACAGGGGTCTGTACTTCGGAATTTACGACTCGCTGAAGCCGGTGGTGTTGGTGGGCAACCTGGAGGGCAATTTCTTGGCGAGTTTCTTGTTGGGATGGGGAATCACGATCGGAGCGGGTCTGGCGTCGTACCCCATCGACACGGTTCGGCGTAGGATGATGATGACCTCCGGAGAGGCAGTGAAGTACAACGGGTCGATGGACGCGTTCAAGCAGATTTTGGCGAAGGAGGGAGCGAAGTCGTTGTTCAAGGGCGCTGGTGCGAACATCCTTCGTGCGGTGGCTGGAGCCGGAGTGTTGTCGGGATACGATCAGTTGCAGATCTTGCTTCTGGGCAAGGCCTACTCTGGAGGCAGCGGCTGAGTGCTTCGTAGCGGATTATGAAGAGAATTTTGTTGCCCTGGTCAATCTTTAATTTAGCACTTTCTTTTTTGTAGTGTAACTTTTTGAGTTCTTTCGCGTTCTGACTATCATAGTGCACATGCGTATAGTGCGCTGAGCTGGTTATCGTGTTAGTTTTGTGTCTTCGAATTAACTTCGAGATTACTCAACTTAGGCGCCATAATGTGCTTATTTACAACTCTTATGAAGCAAGAATTGCTGGCTTCTGGTTCGTCCATTGTGCTCTCTTTTTATCTTCATTTAATATCATTCTATACACCTCAACAAATAAAAACAAATTTCT | |||||||||
gi|208399109|gb|DC904518.1|DC904518 DC904518 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp AGATTGACGAGTGCAAGAAGA EST sequence (targeted fragment marked with yellow): AGTACCAAGCTCAGACGTGTAGCCGACGAAGCCAATAGCAGCTGGGTATGCTAGTCACTGATTCTGAAGCGGCCGGTGTGTCGATTGCGATGTATCTCAGTTCGGCGAAGGCCTGTGTCTGGAACATGGGAAGAGGGTCTTCTTGCACTCGTCAATCTCTCACAGCAACTGGGCAGGGTTGTATCCGAACGTGGAAAACGCAGCAACCGTTGTTGAACCAAAGGATGGTATTTTTCTCCGAGAAAAACGCCGTGGCTTATCTGGTGTAGACGATCCCTAATCCGGACATGACCGCCGCTGTGCAGGTGTTGGGGAACCACAATGCGCAAGAGATGCGAGAGATGGAGGAGTGCAAGAAGTACGACTGCGAAGCTACATGCTTCATCGAGCAATGAAGTCTGGGTTTTCTCCAACTTCCGCATACACACACTTTTCTCGACGACATCCGTTTCAAGCGACGTCGTAAAGATAGGGTGACAAGGAGCGTTCCAGAGCTCAGCTCGGGGCATGCCCCGGCACTCCCTAGCATATAAACATACCGGGTGGAATTTGTACCCACCAGGTCTTGCTCGGTGTCCCCTGTGCCCAAGCTGTTGGCTGCATTGCCCTCGCGATTCGAGTGTGGAGAGATTTTAGCAATGGCCTCCGCTGTGGCTTCAACCGTTGTGGCTCCTGTCTCTGTGACTGTGGCGTCATCATCTGTGGCCGCCTCTCGCGAGTCTTCCTCCGTCAAGGCTTTTTCTGGACTGAAGTCAGCGACCTTTT | |||||||||