| mature miRNA: AGATTGAGACTTGTATGGCTT species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|13372297|gb|BG453503.1|BG453503 NF092E09LF1F1068 Developing leaf Medicago truncatula cDNA clone NF092E09LF 5', mRNA sequence AGATTGAGACTTGTATGGCTT EST sequence (targeted fragment marked with yellow): CCATTGTGTTGTGCATTTGTATTTTAACAAAACTCATCTCACACAATCACAAACCAAAGCCAAATTCTCTCTGAAAGGAAAGATCAATCAAAAAATCCGATCCACCAAAATCTATTTTCAAATCAATAACAAATTTTTGCGATTGGGATAATTAGATAATCAAAATCAAATCTTCATCATCATGAGTGGAAGAGAGTGTGATGCAGATGGTAGCACCCCATTATTGCAAACCCAATATGCAGATAATTCATATCATGTCAAAAGAACTGGAACAGTATGGACAGCAGTGGCACACATAGTGACAGGAGTAATAGGATCAGGAGTGTTATCATTAGCATGGAGCATTGCACAAATTGGATGGATTGCAGGACCATTAGCAATTATTTTATTTGCTTCTGTTACTCTTCTCTCTGCTTTTCTTCTCAGTGATACTTATCGTTCTCCTGATCCTGAACTTGGCCCTAGGAGAAGCTCTTCTTACCTTGATGCTGTTAATATTCATAAGGGAGAAAAGAATGGACGTCTCTGCGGTGTTTTTGTAAACATAAGCTTATATGGTTTTGGAATTGCTTATATCATCACAGCATCCATCAGTATAAGAGCAATCCAAGACTCAATCTGCTTCCATAA | |||||||||
gi|27403861|gb|CA916931.1|CA916931 EST641078 GPOD Medicago truncatula cDNA clone GPOD-34J21, mRNA sequence AGATTGAGACTTGTATGGCTT EST sequence (targeted fragment marked with yellow): CTCATCTCACACAATCACAAACCAAAGCCAAATTCTCTCTGAAAGGAAAGATCAATCAAAAAATCCGATCCACCAAAATCTATTTTCAAATCAATAACAAATTTTTGCGATTGGGATAATTAGATAATCAAAATCAAATCTTCATCATCATGAGTGGAAGAGAGTGTGATGCAGATGGTAGCACCCCATTATTGCAAACCCAATATGCAGATAATTCATATCATGTCAAAAGAACTGGAACAGTATGGACAGCAGTGGCACACATAGTGACAGGAGTAATAGGATCAGGAGTGTTATCATTAGCATGGAGCATTGCACAAATTGGATGGATTGCAGGACCATTAGCAATTATTTTATTTGCTTCTGTTACTCTTCTCTCTGCTTTTCTTCTCAGTGATACTTATCGTTCTCCTGATCCTGAACTTGGCCCTAGGAGAAGCTCTTCTTACCTTGATGCTGTTAATATTCATAAGGGAGAAAAGAATGGACGTCTCTGCGGTGTTTTTGTAAACATAAGCTTATATGGTTTTGGAATTGCTTATATCATCACAGCATCCATCAGTATAAGAGCAATCCAAGACTCAATCTGCTTCCATAACAAAGGGAGTGAAAAAACATGTGGATATGATGATACATATAACATGCTTGTTTTTGGGGCTATTCAAGTTGTTCTCTCGCAGATACCTAATTTCCATAACATCGAATGGCTGTCTATTGTTGCAGCAATAATGTCCTTTGCTTATGCTTTCATAGGAATGGGACTTGCCATTGTTTAAGGTCACGAAAATGGA | |||||||||
gi|8748744|gb|BE205446.1|BE205446 EST398122 KV0 Medicago truncatula cDNA clone pKV0-21L17, mRNA sequence AGATTGAGACTTGTATGGCTT EST sequence (targeted fragment marked with yellow): ACTAAGATAGATAGATAGGAGGAACACAACACATATTTGGCAACATGAAGTTTTCATTAGCTATTAAAACACACAAGTCTTAATCTCAAGTCTAAATACTTTCAATGACCCATCACTCAAGTAATGCAAAAATGAGAAAGTGAAAATTGAAGGATAGATAGATGTAGACATTCATTGTGGGACCACCATATTGCACCTCATAGCTTGTTAGATTCATATCAGAAACACACCAGCATGGCCCATCACTCATATCAGAGAAGCATTCTTTGTAAAGATTTGAATCTGAAACCACCCCAGTTGAAAATTATCTATCTGATGTATACTTGAACATGACCTGAAATAAATAGCATCCAAAAAGGAAAGGACTTAGTCTTAGGCCACCCTTCATTATTGCTGCTTTCAGAAGAAAGAGCACCATGTGGAAGTAGTAAATGCATTAAATTCAGGAGATGTTTTCCATTGGGATTCTTTACATGTGCTAGTTACTATTGCTCCTCTTTGAAGCACTTCCAATAAAAGTTTGTGATGGGGTTTTATGACTTGGTTTTGCTGTTCTGTTATGTTTGGTATGTCTTTTAT | |||||||||
gi|13368782|gb|BG450000.1|BG450000 NF012G12DT1F1100 Drought Medicago truncatula cDNA clone NF012G12DT 5', mRNA sequence AGATTGAGACTTGTATGGCTT EST sequence (targeted fragment marked with yellow): GTGTTGTGCATTNGTATTTTAACAAAACTCATCTCACACAATCACAAACCAAAGCCNAATTCTCTCTGAAAGGAAAGATCAATCAAAAAATCCGATCCACCAAAATCTATTTTCAAATCAATAACAAATTTTTGCGATTGGGATAATTAGATAATCAAAATCAAATNTTCATNATCATGAGTGGAAGAGAGTGTGATGCAGATGGTAGCACCCCATTATTGCAAACCCAATATGCAGATAATTCATATCATGTCAAAAGAACTGGAACAGTATGGACAGCAGTGGCACACATAGTGACAGGAGTAANAGGATCAGGAGTGTTATCATTANCATGGAGCATTGCACAAATTGGATGGATTGCANGACCATTAGCAATTATTTTATTTGCTTCTGTTACTCTTCTCTCTGCTTTTCTTCTCAGTGATACTTATCGTTCTCCTGATCCTGAACTTGGCCCTANGAGAAGCTCTTCTTACCTTGATGCTGTTAATATTCATAAGGGAGAAAAGAATGGACGTCTCTGCGGTGTTTTTGTAAACATAAGCTTATATGGTTTTGGAATTGCTTATATCATCACAGCATCCATCAGTNTAAGAGCAATCCAAGACTCAATCTGCTTCCATAACAAAGGGAGTGAAAAAACATGTGGATNT | |||||||||
gi|161109130|gb|EY477034.1|EY477034 METAY37TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence AGATTGAGACTTGTATGGCTT EST sequence (targeted fragment marked with yellow): GGACTGCAAAAAACAAACAAACTCAACAATGAAACCTTGCATGGTTTTTCTCTTTGTCTTGTTCTTTCTTCATAGCTATGTTCAAGGACGTTTTGTGGTAGAGAAAAACAGCATAACGGTTCTATCACCACATAAACTAAGAGGTAAAAACGATGGTGCTATAGGAAACTTTGGTATTCCAAATTATGGAGGGTATATTGTAGGGTCACTTGTTTATCCTGAAAAAGGCTCTCATGGTTGTCAAGTCTTTGAAGGTGATAAGCCTTTCAAGTTTCAGTCTCATCGTCCTACTATTGTTCTTCTTGATCGTGGAGAGTGTTATTTTGCCTTAAAGGTATGGCATGCTCAACTAGCTGGAGCCGCAGCAGTTTTAGTGGCTGACAGCATTGATGAGTCACTGATAACTATGGATTCTCCTGAGGAGAGCACCGATGCCGAAGGCTACATAGAGAAGATTGTAATTCCATCAGTACTAGTAGAGAAATCCTTTGGTGATTCATTGAAAGAAGCTTTAAACAACAAAGATGAAGTTTTGCTAAGAATAGATTGGAGGGAATCGGTACCTCACCCTGACAATCGAGTGGAGTATGAGTTCCGGACCAACAGCAACGACGAATGTGGTGCACGTTGCGATGAACAGTATCATCCACGTGAGAGAAGATTGGCTATATATTTGCTTTTGAGTCCATTTCACAGCTAAGAAAATTCAGTACTTTTACTGTAGGAAACTTTTGTGAAACATTGTATACATGTACACATATAGAAATTTCTTCCATAGAATAATATTGATATCTAATTTTCACAGTTTGTAATAGATATATTGAGATGTAAATGAACACGTACGTGAGAAT | |||||||||
gi|11910013|gb|BF644884.1|BF644884 NF023H01EC1F1014 Elicited cell culture Medicago truncatula cDNA clone NF023H01EC 5', mRNA seq AGATTGAGACTTGTATGGCTT EST sequence (targeted fragment marked with yellow): TTTTCTCTTTGTCTTGTTCTTTCTTCATAGCTATGTTCAAGGACGTTTTGTGGTAGAGAAAAACAGCATAACTGGTTCTATCACCACATAAACTAAGAGGTAAAAACGATGGTGCTATAGGAAACTTTGGTATTCCAAATTATGGAGGGTATATTGTAGGGTCACTTGTTTATCCTGAAAAAGGCTCTCATGGTTGTCAAGTCTTTGAAGGTGATAAGCCTTTCAAGTTTCAGTCTCATCGTCCTACTATTGCNNTTCTTGA | |||||||||
gi|11935287|gb|AW694612.2|AW694612 NF078B07ST1F1060 Developing stem Medicago truncatula cDNA clone NF078B07ST 5', mRNA sequence AGATTGAGACTTGTATGGCTT EST sequence (targeted fragment marked with yellow): GAGAGAGAGAGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTAACAAAAAGAATCAACCATATATTTTACAAGGAAGTACAATAGAATAAGCTCAGAGCTGGTGAGGCAACAACAGAGAATCAAACTTCACCTGTATACATTAATTAATGACTAACCTATCCAGACACCACGGCTCACACTCAAAATATATTGTATAGTTACAGTATCACGATCCATACACTAATAATACGTGATGATAAGGAAATGAATAAAGCCATAAAACTTAAATCCGCGTCGCAACTTCTTTTGAGTGGAATTGAATATGGAGAAGCTACATACTATAGTTTAGGAGAAGGATTGAAGGGCCGAAGATGTGGTGACTAAACTTGATAAGAGACCAACTATGACAGCACTGTTATATGTGCTTGGTTCTCCTTGCATAGAATTGTTCCTAGAATCAATGTAAGTCTCAATTTAAGAAAGGTCCACCAACAAGTGCTCCAGTAGCTACATTGGGATTCGGGATCGGATGAGTCAAGCCACTGCCACCCGTCCTTGCAACCAGTTTTC | |||||||||