| mature miRNA: AGATTTTGGTTGGATGTGACG species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88723562|gb|CI747072.1|CI747072 CI747072 Oryza sativa (japonica cultivar-group) after pollination embryo Oryza sativa Japonic AGATTTTGGTTGGATGTGACG EST sequence (targeted fragment marked with yellow): GGATCTGCAGTGCGAGCCACGAAGGTTGGCGTCGTCTCCTCCTCCCTCTCCTCCTCGCGCGCGGCTGCCGTCGAGAAGACGCTCGGCCTCCCTTGTGCGGCCTCACCTCCTCGCGCTGAATCCCCTACTCCCCGTGTTAGGTGCGCCACCANTTCTCCTCCTAGCGCGCCGCTGCAGCCTGCTGCTTCTAGCGCCGCCGCCGCATCCAACCAAAAGCAGCCTTTCTACTATTTCTAGCACCGCCTCTGCCCTTGCCGACGCCGTCGCCTGCCGTCCCCCATTCCCCGCGTCAGCGCCTCCTCCAGTGGAGTCCCCGTCCACCGTTGGCCCGTCGCGGAGTCGCCAG | |||||||||
gi|88232084|gb|CI231933.1|CI231933 CI231933 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft AGATTTTGGTTGGATGTGACG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTCAGTCACATCATCTTCAATTTCAACCAAAATCTAAACTTTGCGCTGAACTAAATACAGCCTTAGATCCAAAGTTTGGATCCAAACTTAAGTCCTTTTCCATCACATCAATCTGTCATACACACACAACTTTTCAGTCACATCATCTCCAATTTCAACCAAAATCCAAACTTTGCGCTGAACTAAACACAAGATACTTTAGAACATCTGGCAGCTCGCTCGTTACCGGCACGACCTTTACTCTCAGAAAGATATCTGAGTGTCTTGCCAGGTGATTGCAGATGCAGCCAACGCATCAGAGTAGCCAGAACTGATCATAATCGGATGAATCACAGAACCACTTGATTCACGGAAATATTATGTCTGCATCCAATAACTATGAGTTCCATACTGTTGCCAGGAATTGAACACAATTGCATCTGGATTCCAGCTATTTTTCTCTAACCCAGTAAGGAAAGCAGCCTCAGCCAGTGAAGCAAGAAGTCTTCCATTGCTAGCATCCTTTCATTCATTAACAGAATACTCACTGACAAAT | |||||||||
gi|88549525|gb|CI479420.1|CI479420 CI479420 Oryza sativa (japonica cultivar-group) 15 days after pollination pistil Oryza sativa AGATTTTGGTTGGATGTGACG EST sequence (targeted fragment marked with yellow): GGAAAGCATAAAAATAACCTAGAATGCTCAACCTATATAAACTCCAGTGGCCGACGGAACAAATTTACAGGAAGAACAAATCGCGATACAGTAAAGAACAAACATGATAAACAAATTTGTTCATATATCTACAAACACACAAGCATAAAATGGTCCTCTGAATACTACGGTTTTTTTTTTTTGCCGAAAATTCAACAGAAAACTAAACTCCTTAGGTATTGCACTTCCACTTCGATGTGGGTACGCAGTTCAGGTAGTGGCACCAGTGGCATCCGTCATTTCCATTCTTACCCTTGAAGAGCATCACTAGTGAAACCACAAACCCGACAAGCAGCAAAACGAATGCCACAACCCACAAAACATATTGGTATGCTTTGTATTTGGGAGGCTGATTAGTTTGGGGCAANTCATGTCGTTCCATCCAACCAAAATGT | |||||||||
gi|88414059|gb|CI531031.1|CI531031 CI531031 Oryza sativa (japonica cultivar-group) 5 days after pollination pistil Oryza sativa AGATTTTGGTTGGATGTGACG EST sequence (targeted fragment marked with yellow): CGGAGGAAGATAGACAAGCTATTCAAAAATGCACTCTTAAATACAGGAAAATATGTCCAAGGTAAAACTTAACATTCTTGTCAAAATCCCACAGAATCGAAGCAATGGCAGACACCATTGATGATTATAGCGAAAAGCTGGGAAGACTAGTCGATTGATCACAAAGAAACAGCTAGGGTTCCGTCCTATGGAGAACGCATCCACAGTTTTTGTTCTTCATACAGCACCCAACGACCGGGCTGGCACATCCAACTAAAGTCGATCTAATAGTTTTGGTTGCCTCGCCCACGGCCACCGCCCATTCGTCCACGGCCCCGGGCATAGCCTCTGCCGCCTGGGCTACCTCCACCTCTGCCACCACGTTCATATGCCGGACCTGAACGTTCATA | |||||||||
gi|117230592|gb|CT860556.1|CT860556 CT860556 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD AGATTTTGGTTGGATGTGACG EST sequence (targeted fragment marked with yellow): GAGAAATTTCTCCTTTGAAGGCGCATCACTCCCCACTGAGCCGGCTCCTTGCTCGCCGCTCGCGTTCGTCGTCGTCTCGTCGTTTTCACAATCAATTTGACGTCGCCCCTATTTATGTCCTGCCTCGGTAGTTGATTCCTCCCCATTTCTGTTGCCTCTCGCGGTTGTGGTAATCGACGCTGTAGGATTTTTTTGTTCTTCTTCTTTTGGGTCTTCGGAGGAGGCGTCCGGATCTTTCGTCCCCATCGATCCCTTCCGGCCACGGACATTTCGTGGGTAGAGCGATTGATTGGTGGCTTAGGGTTAATATTGGGCAGTGATTATGGATAGCTCTTTGAAAGAGGACAAGGCTTCGGTCGAATCACGGGATGATTAGTTGGGGGAGAGAAACTCCCCTATCAATTAGAATTCGTTGCCAGAAACTGCGGCGTGTGCTGGGGCCAACCTGGATGATGAAGGCTTGTACTAAGCAGTGGAATATGTAGTTAAGGATTAGAATTCGTGAAAGAGATTTAAAATTTCATGGTACAGTTATCTAAAATATTACTTAATAGTGATGAATATGAACATATTTTGTACGAACCATATACGAAAGTAGTAATCTTATCGTTGGATATTGTATAGTAGACAAAACATGTTTTCTATTGATAATAAGGATTTCAAGTGTAACAAGTGGTTTGTGATGGTTCAATATATTGGTTTATGTGTGGGTGATTATAATATATTAGTATGAATGATAGTTAAGCTAAATTTGTTTTCTATGGTCCTTCGCTTCAGTAGACCCTCAAGAATAGAAATCTAGAATATCTGTAAGTATATAGAGAAAATGGAAGACGATGTTTTTTGTTGGTGATATAGTTTATAACATAATTTTCTGATATAGATAGAAGGGGAGAACAATGGATTATTATATACGATGCTTTAGGAACCCTTTGTAAAGCATATAGAATATCTAATCTGGGAACCTTATTAGGGTGTTGTAGATGAAAATAGAATATAAACGATAAAATAACATTTATATAGTAATTCGGATATTATCTGTAAACTTTTAAAAGTCTATATTTGCTAATATATGGATGCTGTTTTTATAATTGTTGGGAGGAGAGAGTGGATGGGGAATGTTAGTGTAGTTAATGTCTATGTTCGAATTCTAGTTGAATAAACGGAGGAATATGACATAACTAACCAAAATCTTCGCATCCTTTATAGCTTATCTGAATATGGTT | |||||||||
gi|44671797|gb|CR285231.1|CR285231 CR285231 Oryza sativa library (Han B) Oryza sativa cDNA clone p417d02p3, mRNA sequence AGATTTTGGTTGGATGTGACG EST sequence (targeted fragment marked with yellow): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTGTAGGAAGATAGACAAGCTATTCAAAAATGCACTCTTAAATACAGGAAAATATGTCCAAGGTAAAACTTAACATTCTTGTCAAAATCCCACAGAATCGAAGCAATGGCAGACACCATTGATGATTATAGCGAAAAGCTGGGAAGACTAGTCGATTGATCACAAAGAAACAGCTAGGGTTCCGTCCTATGGAGAACACATCCACAGTTTTTGTTCTTCATACAGAACCCAACGACCGGGCTGGCACATCCAACTAAAGTCGATCTAATAGTTTTGGTTGCCTCGCCCACGGCCACCGCCCATTCGTCCACGGCCCCGGGCATAGCCTCTGCCGCCTGGGCTACCTCCACCTCTGCCACCACGTTCATATGCCGGACCTGAACGTTCATATCCTCCTGGAACACCATATCCCCAGTTGACTCTTCCACGGACCCCGACAACAACAACAACTCTGTTCCGGTTGTAGTTCCAGGCACCATTTTCATATCCTCCATATACAGCTTGGTTGTAAACATACCCTCCATAAGCACTTGATTGTGTCATATGCTCTGAGACAACATATCCCAGTGGCTCTCCAGGGCCCGGCCTAGGGGGAATCCCGTACCACAAGGGGGCCCCGGAAAAAAAAGCGCAAACGGACGGGGACGGCAAGGACCGGAAAGGGAAGCAGCAACCATAGCGCGACCACACCCACCCCAGAGACCGCGGGAAAAAGACGAGGAAGAAATCAACGCACCGCAGG | |||||||||
gi|86838930|gb|CI330346.1|CI330346 CI330346 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone AGATTTTGGTTGGATGTGACG EST sequence (targeted fragment marked with yellow): CGTAATCAGAAATCAGTACTGAAGTAGTTTCAATGGTTCTTGCATTTGCATCACAATTCAGACTAAACTTAACAGAATAGAGAATGTTCTGATCAGTCTATGTACAAGCATTCAGGGTGCAGATCACCCGCGCAAATCAGTGTCTTCCCAGATGAGATCCACACGCGTTGTGTGATCATGATATGTAGGCCTTGACGAGATCGGTGTAGTTGCAGATGTCTCCTGTCCGAGGGCATGTAACCTTGCCTCCATTCTTCTTGGCCATCTCATCAAGAGCCTTGGTGCTATAAACATAGCCATTCGGGAAAACGAGCGGTGGGTTCTCAGTGTCCATGAGCTCCTTGGTTATGTAGCAGACAAGCTTTGAATGGTGCTGCTTGGAGAATGGAAGCGGCTCTGCTAGTTTCGGAACCCAGGCAGGGATAAGGGGTCTTCTTTGGGGCAGTTACATCGAACCAGAATCTAATGATG | |||||||||
gi|3106672|gb|D42392.1|D42392 D42392 Rice callus cDNA (H.Uchimiya) Oryza sativa cDNA clone AK101, mRNA sequence AGATTTTGGTTGGATGTGACG EST sequence (targeted fragment marked with yellow): TTTTTGGCTGTGTTTAGGCTGTGTTTAGATTCAAAGTTTGGATCCAAACTTCAGTCCTTTTCCATCACATCAACCTGTCATTCACACATAACTTTTCAGTCACATCATCTTCAATTTCAACCAAAATCTAAACTTTGCGCTGAACTAAATACAGCCTTAGATCCAAAGTTTGGATCCAAACTTAGTCCTTTTCCGATACATCAATCTGTCATACACACACAACTTTTAGTCACATCA | |||||||||
gi|86523307|gb|CI163513.1|CI163513 CI163513 Oryza sativa (japonica cultivar-group) shoot and callus Oryza sativa Japonica Group AGATTTTGGTTGGATGTGACG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTTTTAAACAAGGAAACATTTTTATTTCGAGGGAAGGACGCAGGACTGAAGAAACTTAAAAGTGTCCCTGATGTGTTTCATCATCCGTTCTGTCACTCACAAATGGACTCAAAGTACAGACCCAGATCAAGTGTCGTGTTCAACCAAAATGTTAACTGGCGAATGGAAGGTGGCGTGGTTTTCTAGAAACTGCAGATTTGTACAGACCAATCCCCAGACAGAAGAAATACAAGATCAAGACTGGTGGGCAGCAAACAAATTTTGCTGGGATTTATTTGCCCCGATTCATCGTCCAAGTTCTTCATACCTTCAGGGCCAACTTCTTAGCAGCAAGAACCTCCGCTTCGAGGGTTGGCTCCCAAAGAATTGTGGTTTCAGCCAATAGCGCTGTCACGACGTACGGGTCCATGTTTGATGCCGGGCGACGGTCTTCCAAGTAGCCTTTTCCCTTCGCCTCGGTGTCTCGCCCCACCCGAAT | |||||||||
gi|66915217|gb|CX102065.1|CX102065 RECm3043 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl AGATTTTGGTTGGATGTGACG EST sequence (targeted fragment marked with yellow): TGGTACCTGCAGGTACTGGTCTGGACTCCGTGTCACCACGCGTCGGGGTATAGCTTTGCTGGTGGTTACATTGCCGGTGTCTTCTGTGCTATTGTTTCTCACCCGGCAGATAATCTAGTCTCTTTCCTGAACAATGCCAAGGGTGCTACAGTGGGTGATGCTGTTAAGAAGCTTGGTCTCTGGGGTCTATTCACTCGTGGACTGCCCCTACGTATTGTCATGATCGGTACCCTTACTGGAGCTCAATGGGGAATTTATGATGCATTCAAAGTCATGGTTGGATTGCCAACTACCGGTGGTGTTACGCCAGCACCAGCCACTTCAGATGCTGGATTGAAAGCTGTCAGTGCCTGATTTTCTCATTAGGACAACTTGGTTATTTTTGGAACTTATCGTTCTTCATGGATGGAAAATATATTGGTCACATGAGTTCAATTATATTTTTGTTTAAAATTTTTGTAGAGGATGACTATGTCATCTTTGGAATGAGAGGAACTCGTTAAAACAGACAATGATATATTTTTTTTTGTCCAAGTGTAAGTTCTAATACTTGGTATAAAATAAGATTTAGGAACTTGGTATTCCCTCCGCCCCTAAATATAAAGAATTTTGGTTGAATGTGACACATCCTAATACAACGAATTTGGACAGGCTTCATGTCCACATTCATTGTAATAGGATATGCCATATCCAAGCAAAATCTATAAGGGACGGAGGGAGTATAAAATAAGATTTAGGAACCCAGATGGTTAGCGCACAAGTTGTGTTCCATTTCCTTTACACCATATTCTATTTTAATTAATTATTTAAACTACTCTCATGTATTCTGGGGCATCCCCATTTACGATTTACTAACCCTGGTCGATATTCACTTCTGTCCTCGAAAGAAGAAGTGTTAAAGAACAAGCAAGAGAAAGAAAACAAATACAAAAAAGGGCGGCAGGACACATAAAGGTGAGGACTTATGGCAAAAAGAGGTAGGGGGAGAACACGAACCTGGTAAGCCGCTTGCG | |||||||||
gi|41881460|gb|BX927424.1|BX927424 BX927424 Oryza sativa library (Han B) Oryza sativa cDNA clone p475c05p3, mRNA sequence AGATTTTGGTTGGATGTGACG EST sequence (targeted fragment marked with yellow): GGACCGATGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTGGTTCTGATTCTGGGGTTGGACTCTGATTACTTACGTTGATGCTAAATGTCACATATAACCAAAATCTCAACATAAACGGGAAGTCACACAGATATAGCCAACATTCATGACCACAAATTATCTTATCATACTTAGCAGGTTCACAAGGCCTTCGGGTTCATGAGCATCAAACACCAAAACTACTGGAAGAGCATGAGCATCAAACACCAAAACTACTGCAAGAGCATGACCATCAAACACCAAAACTACTGCAAGAGGCACCCTGACAAATTTGCTGGCATATATGAACAGCAAAANTCTAATCACAAGAGGGGGCAATCCAAGGGTCGTCTTCCACTTTCTTCCTTCTCGCTCTTCCATTCTTCTCCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | |||||||||
gi|86424932|gb|CI063693.1|CI063693 CI063693 Oryza sativa (japonica cultivar-group) UVC irradiated shoot Oryza sativa Japonica Gr AGATTTTGGTTGGATGTGACG EST sequence (targeted fragment marked with yellow): GATTCTTGNTGTTGACTCTGATTACTTACGTTGATGCTAAATGTCACATATAACCAAAATCTCAACATAAACTGCAAGTCACACAGATATAGCCAACATTCATGACCACAAATTATCTTATCATACTTAGCAGGTTCACAAGGCCTTCTGGTTCATGAGCATCAAACACCAAAACTACTGCAAGAGCATGAGCATCAAACACCAAAACTACTGCAAGAGCATGAGCATCAAACACCAAAACTACTGCAAGAGGACCATGACAAATTTGCTGGATATATGAAAGCAAAATCTAATCAAAGAGGGAGAATCCAAGGTCGTCTTCACTTTCTTCCTTCTCCTCTTCCTTCTTCTCCTCGGCTTTGGGGGCCTCGGCGGCAGCTCCACCAGCAGCGGCACCGCCAGCAGCAGCACCTCCAATGGCAGCACCACCACCAACAGCACCGATGATCACCTGGAAGACGGCGGAGCTGGGGGAGACCATGGCGAAGGAGGACTGGACCCCGGCGGCCGAGTCGGCGGCGGACGCGGCGGCGACG | |||||||||
gi|29644118|gb|CB649125.1|CB649125 OSJNEb12O08.f OSJNEb Oryza sativa Japonica Group cDNA clone OSJNEb12O08 5', mRNA sequence AGATTTTGGTTGGATGTGACG EST sequence (targeted fragment marked with yellow): ATCCTCTCGAGGTCTCGATTAGCTTGTACAGTTTGTCCTCGAGCTCTCGACCGGCTCCGGCAATGGCGTCCACGGACACTGAGCAGCAGGAACACGCAGTGGCGCTGCTACAACCCGAGGTTGAAGAAGCATACACCACTGATGGGTCTCTTGGCGTCGATGGCAACCCGGCGCTGAAGCATCGCACAGGCGGATGGATGGCATGCCGCCCGATTCTTGGCACCGAGTTCTGCTACTGCCTGGCCTACTACGGCATCACGTTCAACCTCGTCACCTACCTCACCGCCGAGCTGCACCAGAGCAACGTCGCCGCCGCCAACAACGTGTCGACGTGGCAGGCCACCTGCTTCCTCACGCCGCTGGCCGGAGCCGTCGCCGCCGATTCCTACTGGGGAAGGTACCGCACCATGGTCGTCAGCTGCTGCATCGGCGTCGCTGTTAGTCCCCTCCATTTCATTCGATCCGGGTTGTGTTTAGTTCCAAATTTTTTTTTTCAAACTTCTAACTTTCCATCACATTAAATTTTTCATACACACAATTTTTTTCAGTCACGTCGTCTTCAATTTCAACCAAAATCTAAACTTTATACCAATCTAAACACAGCCTTAATTAGAATTAGTCACTGTGTCCTTCCTGCCGTGAATTTATGGCTGATGGCAAGTAATCAGTCACTGTGTGGGATGTGGATTTTTATCCCTTGAGAGAACATTTAATTTTATATTAATATTAATTTATGTTAATTTATGTTGTCATTTAATTTTATATTTTATATTAATTTATGTTGTCCATTTTTTTTAATTTTTTTATGACT | |||||||||
gi|87024934|gb|CI261443.1|CI261443 CI261443 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat AGATTTTGGTTGGATGTGACG EST sequence (targeted fragment marked with yellow): TTTACGTTGATGCTAAATGTCACATATAACCAAAATCTCAACATAAACTGCAAGTCACACAGATATAGCCAACATTCATGACCACAAATTATCTTATCATACTTAGCAGGTTCACAAGGCCTTCTGGTTCATGAGCATCAAACACCAAAACTACTGCAAGAGCATGAGCATCAAACACCAAAACTACTGCAAGAGCATGAGCATCAAACACCAAAACTACTGCAAGAGGACCATGACAAATTTGCTGGATATATGAAAGCAAAATCTAATCAAAGAGGGAGAATCCAAGGTCGTCTTCACTTTCTTCCTTCTCCTCTTCCTTCTTCTCCTCGGCTTTGGGGGCCTCGGCGGCAGCTCCACCAGCAGCGGCACCGCCAGCAGCAGCACCTCCAATGGCAGCACCACCACCAACAGCACCGATAATCACCTGGAAGACGGCGGAGCTGGGGGAGACCATGGCGAAGGAGGACTGGACCCCGGCGGCCGAGTCGGCGGCGGACGCGGCGGCGACGAGGCGGCGCTGCAGCTCGTAAGGGGTGGCGGCGGAGGCCTCGAGCTCGCCCTTGAGCTGCTTGGCCGTCCACTCCTCGCCGGAGCTCC | |||||||||
gi|88961028|gb|CI096431.1|CI096431 CI096431 Oryza sativa (japonica cultivar-group) Panicles more than 5cm stage Oryza sativa Jap AGATTTTGGTTGGATGTGACG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTGACTCCTATTACTTACGTTGATGCTAAATGTCACATATAACCAAAATCTCAACATAAACTGCAAGTCACACAGATATGGCCAACATTCATGACCACAAATTATCTTATCATACTTAGCAGGTTCACAAGGCCTTCTGGTTCATGAGCATCAAACACCAAAACTACTGCAAGAGCATGAGCATCAAACACCAAAACTACTGCAAGAGCATGAGCATCAAACACCAAAACTACTGCAAGAGGACCATGACAAATTTGCTGGATATATGAAAGCAAAATCTAATCCAAGAGGGAGAATCCAAGGTCGTCTTCACTTTCTTCCTTCTCCTCTTCCTTCTTCTCCTCGGCTTTGGGGGCCTCGGCGGCAGCTCCACCAGCAGCGGCACCGCCAGCAGCA | |||||||||
gi|88718479|gb|CI741989.1|CI741989 CI741989 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro AGATTTTGGTTGGATGTGACG EST sequence (targeted fragment marked with yellow): GAAAAGAAAAATTAAACCCATCTGATAGATAATAAAGACAGTGTTGTTGTCACCATGCTAGAGCACTGCCGCTGTGTTGGCATCTCTCGAGGTCCCCACCCTGGCCTCTTGTCTATACCGTCAAATTATTTATCACATCAGCTTAATTATTAGATTTTAAAATATAGACTTATTTTCTATAAGAAAACCTTTAAGTAGAAACTGAAAAATTAAATTGAAAACTGTTTATAGGAAAACTTGACATACAACTAAAATCTAAAAGAATATGAGAAAAAGTTTATTTTAAAACTTTATAGAAAACATTTGTTGCAAAAAAAATTCAAAATATAGACTGGAAAATTTTCATTGAGAAACTTTCAAACAGAAAAGC | |||||||||
gi|117231442|gb|CT846855.1|CT846855 CT846855 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD AGATTTTGGTTGGATGTGACG EST sequence (targeted fragment marked with yellow): ATCTCCACATGTTCATTCATTCATCCGCCACATTAATTTCTATCGTCACTTCTTGTTTTGAGTTATTTCTTTCTTCCGATTTCAGTTGTAAGTCGCTTTAACCTTCTCAACTTTTTTTCTTCCAATTTTTTGCACTATTCAGATAAATGAATGTTAATTCTCATTAAGTTACACTATTTCATACTCCCTCTATCCCTAAATATAAGGGTTTTAGTTGGATGTGTCCAGATTTCTTGTATTAAGATACGTCATATCCAACCAAAACCCCTTATATCTAGAGACGGAGTGAGTATTATAAGTCGTTTTGATTTTTTTAGTCAAATTTATTCAAGTTTGATCAAATTTATGAAAAAAATAGTAATATCCGCAACACGAAATTAAACGTTTAATATATTTTGATTATATGTTTGTTTTATATCAAAAATATTTGACTAGGAAAAAGAGTCGAAACGACTTAGAGTATGTGTATTTTTCTTAATCCTCCTGCACAAATCTAAAATAATACATGGTTCATATTTTGAAAAAGAATAAAAAAAACAGAGAGACAGTAGTCCGTCCATGAAGCGACGAGATCAGGAGCAAGCGATCGCGAAGCTGACGAGCAGCGGCGGCGGCGGCGGCGGCGGCGGGAGAGACGACCTCCTGATCATCTTCATGTGGACCAAGAAGGCCATGCTCGCCGCCGTCGTGGTGGTCGTGGCCAAGTGCAGGGAGCTCTGGGAAGGGGTGCTCACGGCGGGCCCCGGCTGCGGCTGCGTGTCGCGTTCCGCCCCCGCCGCCGACGACGACGACGGCTACTACTTCGGCCGGAGCTACGAGTTCTCGTGCTCCGCCACCCCGGTCGCCTTCGCTCCGGCGAAAGGGGCGGGGGCCCCGGCGGCGCTGCCTGCTGCTGCCCCCTGCGTGGGAGCCAGCAGGCGAGGGAAATGCTGCGGGAGGGGGGATGATGTCCCCGG | |||||||||
gi|218501061|gb|FG950432.1|FG950432 MA_93-11_07327 Mature embryo cDNA Library of 93-11 Oryza sativa Indica Group cDNA 5', mRNA s AGATTTTGGTTGGATGTGACG EST sequence (targeted fragment marked with yellow): TTTTTTTTTGATGCTAAATGTCACATATAACCAAAATCTCAACATAAACTGCAAGTCACACAGATATAGCCAACATTCAGAACCACAAATTATCTTATCATACTTAGCAGGTTCACAAGGCCTTCTGGTTCATGAGCATCAAACACCAAAAGTACTGCAAGAACATGAGCATCAAACACCAAAACTACTGCAAAAGCATGACCATCAAACACCAAAACTACTGCAAGAGGACCATGACTAATTTGCTGGATATATGAAAGCAAAATCTAATCAAAGAGGGAGAATCCAAGGTCGTCTTCACTTTCTTCCTTCTCCTCTTCCTTCTTCTCCTCGGCTTTGGGGGCCTCGGCGGCAGCTCCACCAGCAGCGGCACCGCCAGCAGCAGCACCTCCAATGGCAGCACCACCACCAACAGCACCGATGATCACCTGGAAGACGGCGGAGCTGGGGGAGACCATGGCGAAGGAGGACTGGAACCCGGCGGCCGAGTCGGCGGCGGA | |||||||||
gi|117236837|gb|CT855654.1|CT855654 CT855654 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD AGATTTTGGTTGGATGTGACG EST sequence (targeted fragment marked with yellow): AAACTTAACCAAAATCCACAAGCATTTTCTTTTACCCACCAAACAAACAAATCGATCTCTTGTGTCTCATGGCCACCGTGCGGCCACACCCGCCGGCGCCACCGTCTCCGGTGCAGGCGCCGGCGCCGGCGGCGCCCCCTCCGGTGAGCGTCGCCGCGCGGCCGCAGGCGCCGTACTACTACTACTGCCACGGCTGGAAGGAGGGCGTGGCGGAGTCGCGCTGCCCGACGACGGATGCGGCGGCGGCGGCTGCGGCGGCGAACGGTGGCGTGATCGAGGTCTCGTCATCGGACAGCAGCGGCGGCGCCGGCGGCGCCGGCCGATGGGACGATGACGACGACGGGTGCAGCAGCTGCGTCGACGGCGACGATGGCGCGGCGGCCGGCGGCGGCGGGGCGGGGCGGCGCCGCGACGAGGAGGAGAAAGGGAGGAGCCAGCAGTTCGGCAGCTGGTGGAGCCCGCCATGACAGCAGCAGCAGCAGCAGCTTCCTCTGGCCGCCGCCGCCGAATGACAACCGCAAAGACGAAGACCCGGCGGCGGCGGCGGCTATGCGGCAAGAGGAGGAACGCAGATTCTGGGAAGGGTGCCTGGCCTCGGGCTTCCATGAGGCCTGTAAGGGTAGCTAAATTCATCGGATTAACGAATGGCAATTACTGAACCGTATAGTCCTAAACTGGAATACTACAATTCCCGAAAAATCCGTTCTCTTCCATATATCGGTAAATTTTATAAAAGAATAAAAATTTATATCTTCTACAAAGGCGTCTCCTAATCTTCGCTTATTCTATACATATAAATATCAAAGATATGATAATATATGTCTTCCTCTGCTATCAAAGGCTAGGGTCGATGTAACAAATTACACATCAGTAGAATAATGAAAATCATTAGACCGGCACAAATTCCTGCTCCATCCTCAAACAAACAAACGAAAATAGGAATAACACTCAAACTGTGAAACAACACTTAAAGATATCCACTGATGGTTCCGTCACTTCAAACCAAGATTTTGCCCAATACTACGAAAACTAACAAACTATACAACAAAACGAATCATCCGTCCTTATATATATATCACTGTTCCTTTTCAGATATAATAACATAAAGCTTACCCACAATCGCACTTTGAATCACAGTCACCACATAAGATGATCATGATACCATTAACTTGTCTTACGCTGTATTTATTACTGCCTACCGAACTATGATATCCATAACTGTTCACTTTGGTCACTCATTCTCATATCT | |||||||||
gi|88383587|gb|CI543360.1|CI543360 CI543360 Oryza sativa (japonica cultivar-group) root of seedling 10mM H2O2 (10min), 24hr afte AGATTTTGGTTGGATGTGACG EST sequence (targeted fragment marked with yellow): CCATGAACAAATGCAGAATTCATTTTCTTCCGGTTGAGAAGAGTCTGACTGGTGCACTCCAAGGAGCTTCACATCAAACACGAAACTCAGAAGCTGGAGGAAGATAGACAAGCTATTCAAAAATGCACTCTTAAATACAGGAAAATATGTCCAAGGTAAAACTTAACATTCTTGTCAAAATCCCACAGAATCGAAGCAATGGCAGACACCATTGATGATTATAGCGAAAAGCTGGGAAGACTAGTCGATTGATCACAAAGAAACAGCTAGGGTTCCGTCCTATGGAGAACGCATCCACAGTTTTTGTTCTTCATACAGCACCCAACGACCGGGCTGGCACATCCAACTAAAGTCGATCTAATAGTTT | |||||||||
gi|29668462|gb|CB664737.1|CB664737 OSJNEd10K08.f OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd10K08 5', mRNA sequence AGATTTTGGTTGGATGTGACG EST sequence (targeted fragment marked with yellow): CAGTAGTATACGTGCACTTTGGGTTGCTCATGCACTGGCTTAATTTCTGAAGATGAGTAATCTGCTCAAGGCTAAGAGCTGGGTACCAGAGGAGAAAGCTGCAGCGACTGCTTCTGATGAACAGAATGACAAGATAAAGAAAGTCCGGGAACTCCTGGGAAGCCAGATGACAGCAGAGATGCCGTCATTCTTGTCGGACGCCACCATCCGCCGCTTCCTCCGGGCAAGGAACTGGAGCACGGAGCAAGCAACCAAGGCTCTCAAAGAGACTGTCAAATGGAGGCGTCAGTACAGGCCGGACACAATCCGCTGGGAAGACATTCCTGGAAGGGAGCACGAAGCTAGGAGAACATATATAGCCGACTACTTTGATAAGAATGGAAGGATCGTCTTCATATCGAATCCGACAATTAAGGTTCATTAACTGATCATGCATTTAATGACCGGCAGAGTACCCTGTTAACTATTTTTTTTATTAGTCTAACAGAGTACTCATCCATCCCATAATATAAGAGATTTTGGGTGGATATGAGATATGTCCAGATTCATTGTATTAGGATGTGTCACATCCAATCAAAATCTCTTATATTATGGGACGGTGGGAGAAACTTTGAGTCTTCAACTAATTTTCTAAATTATTTATATATTCGAATTTACCACCAATATATGTTGTTTCACTTGTCTGACAACAGAGTAAATCATCCACCAAGGACCAGATAAAACAGTTAGTGTATAACCTGGAGATTTTTGCCATGCACTCAGAAAACATGGAAGACGAATGTACTGTTTGGTTAACTGACTTTCAAGGCTGGGTGGCTACAAATACGCCATTGCCGTTGCTTCGTGAATGCACTCACATAATTCAAAACCAT | |||||||||
gi|89174229|gb|CI042122.1|CI042122 CI042122 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone AGATTTTGGTTGGATGTGACG EST sequence (targeted fragment marked with yellow): GCTTTTAAAGTCCGTCGCTTCGTCAGCCTCGCCGCGCGATGGACGGCGCCGTCGGCGAGCCGCCGTCCATGGCTGACGCTACGTACTACTACTACTAACCTACGGAGTAGATTTTTGCGGAGCCATCGTTTCGCTTATCTACGAAATAAACGAAACGATATATTTACAAACGAAAAATAATTTGTGAATAAAATTTTTATATACGTATTCTTAGCAATTACTCCCGCTGTCAGGTGGATGTGAAATATCTTATTACTACGAATCTAAACGAAGAGTATGAACAAATTCGTATAGTAGTAGGATGTGACACATCCAATCAAAATCACTTATATTATAGGATAGATGGAGTAAAAGAAAAGGCTGAAAAATAAACTTTGATAAAAAAATCTCAAAATCTGCTTCAAATTTAAAGTTAAAAATTTAAATTTTGACAGATAAATATAAATATAAGTGAAAAGATGATGCCCTTGAATTTTCGATGGACTGGCTTTTTGGACAGCATTTTGGTGCACGACATCGGCTGCAATTTCATGGGCTCCAACCGAAATT | |||||||||
gi|88298596|gb|CI563591.1|CI563591 CI563591 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone AGATTTTGGTTGGATGTGACG EST sequence (targeted fragment marked with yellow): GGATTAGCTTGTACAGTTTGTCCTCGAGCTCTCGACCGGCTCCGGCAATGGCGTCCACGGACACTGAGCAGCAGGAACACGCAGTGGCGCTGCTACAACCCGAGGTTGAAGAAGCATACACCACTGATGGGTCTCTTGGCGTCGATGGCAACCCGGCGCTGAAGCATCGCACAGGCGGATGGATGGCATGCCGCCCGATTCTTGGCACCGAGTTCTGCTACTGCCTGGCCTACTACGGCATCACGTTCAACCTCGTCACCTACCTCACCGCCGAGCTGCACCAGAGCAACGTCGCCGCCGCCAACAACGTGTCGACGTGGCAGGCCACCTGCTTCCTCACGCCGCTGGCCGGAGCCGTCGCCGCCGATTCCTACTGGGGAAGGTACCGCACCATGGTCGTCAGCTGCTGCATCGGCGTCGCTGTTAGTCCCCTCCATTTCATTCGATCCGGGTTGTGTTTAGTTCCAAATTTTTTTTTTCAAACTTCTAACTTTCCATCACATTAAATTTTTCATACACACAATTTTTTTCAGTCACGTCGTCTTCAATTTCAACCAAAATCTAAACTTTATACCAATCTAAACACAAGCCTTAATTAGAATTAGTCACTGTGTCCTTCCTTGCCGTGAATTTATGGCTGATGGCAAAGTAATCAAGTCACTGTGTGGGATGTGGATTTTTATCCCTTGAGAANACATTTAATTTTATATTAAAATTAATTATGNTAATTTATGGNGGCATTTAANTTATATTTNATAT | |||||||||
gi|88841503|gb|CI005583.1|CI005583 CI005583 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c AGATTTTGGTTGGATGTGACG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTTTCAGTCACATCATCTTCAATTTCAACCAAAATCTAAATTTTGCGCTGAACTAAACACAGCCATAATTTGTTTTGATGATCTAGTAGTCTCACGGATTACAAGTTTACAACAAGACGGTCAACAGCACCCCGGAGGATATGGCAATCGATGACGTTGAATGACTGACAAGCATTTGTTCTTTGATGCCATGATCAACAGAAATCTTACACATAACCGCACAGTAAAGGTATATGTAGATAAGGAGACAACAAACAAAGATAAGATCAGCTAAATATACTTGCTGCGTTCATTGAAGGCTCACCGTTTCGAGGCTCCTGAAACTTGATTGGTATTTGTGACATCTGTGGTTGGTGTTTCCTAACCTTTACACCAGCCATTGATAACAACTTGTGCGAGGCTACGTAAACATAATCAGAGTTGTCAATCCTTTTCTCTACAAAATATATGACTTCAGATACACCTGACTGGATAATAATCTTAGCACACTCATTGCAGGGGAACATGGTAACA | |||||||||
gi|89177449|gb|CI390628.1|CI390628 CI390628 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone AGATTTTGGTTGGATGTGACG EST sequence (targeted fragment marked with yellow): GAGGCTACAATTAAGACGAACATCGCATTTCAGGGTATGATAGGAGATACAGCACTACTTTGCAATATTAGTAAAACGACAGAGCATTCTGCACTTCGGAGCAAAGATTCAGATAACGTATTCTTGTGTCCAGATGTATCTTCCAAAACTAGGATAAAGTCTTAGACAAGCTAGCCTGTCACACAGAGAGCTTACAATATGGAAACGCAACGAAGAGCATCACACAAAATCCAACTTGACAATGATGCGCGAAATCTCCAGCCAAGTGATGACTCACGATGATGACGAATTTACAGCATGCACGAACCGAGATCTTAGTACTCCCATTTCTTAAGCTCCATCCCATCAGGTGGGCTTCCCTCTACCTTCTTCGAGCCAAAATCTTTCCAATTGGTCGACAGAACAGTACCGTTAGATTCAACCAAGATTTCATCATTGCTCGT | |||||||||
gi|87005716|gb|CI316135.1|CI316135 CI316135 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone AGATTTTGGTTGGATGTGACG EST sequence (targeted fragment marked with yellow): CGTTACAAGGGGCACTCCAGCAAGTGTACCTGATCTTTCAGCGACTCGACACAATCAACAAAAATCTCTTGCACCCCTTTGAACTTGAAACCCAGCTGCGTGGATCTTGGATGTGTTTAGCTCATGTGAGTGTTTCTCATATGGGTTCCTCAAGCTCCTTGGGATGGGAAAAATTGGAAATTGGTTCGCAAGCAAGGCGACTAATTCGTTGTTGTAAAGAACAACGGAGTTGCATAGATATCTCCCAGTAGCCTGAGGTGCCTTCGTACACCAGAATGTGGCAGCTCGCCACATCGTCGATGTGAACATATCCCATTCTCCCATACGAGATGAATCTATCTGTGTCACCTTGAACGTAAGCCCCGGATGTCTGAAGAGTGAGAGACAGTTCATGTGATAAACTGGCCCAATCACAAAT | |||||||||
gi|44668117|gb|CR281551.1|CR281551 CR281551 Oryza sativa library (Han B) Oryza sativa cDNA clone y683g08p3, mRNA sequence AGATTTTGGTTGGATGTGACG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTGTTCAAAAATGCCCTCTTAAATACAGGAAAATATGTCCAAGGTAAAACTTAACATTCTTGTCAAAATCCCACAGAATCGAAGCAATGGCAGACACCATTGATGATTATAGCGAAAAGCTGGGAAGACTAGTCGATTGATCACAAAGAAACAGCTAGGGTTCCGTCCTATGGAGAACGCATCCACAGTTTTTGCTCTTCATACAGCACCCAACGACCGGGCTGGCACATCCAACTAAAGTCGATCTAATAGTTTTGGTTGCCTCGCCCACGGCCACCGCCCATTCGTCCACGGCCCCGGGCATAGCCTCTGCCGCCTGGGCTACCTCCAACTCTGCCACCACGTTCATATGCCGGACCTGAACGTTCATATCCTCCTGGACCACCATATCCCCAGTTGACTCTTCCACGGTCCCCGTCAACAACACCAACTCTGTCCCGGTTGTAGTTCCAGCCACCAATTTCATA | |||||||||
gi|89188746|gb|CI115995.1|CI115995 CI115995 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo AGATTTTGGTTGGATGTGACG EST sequence (targeted fragment marked with yellow): TTTTTTAATAACTGAACAAGGAGTAATTTACATCGTAAAATGGGGAATGCCCCAAAGATACATGTAGAGTAGTATAAAATAATTAAATTTATGAATATGGTGGTAAAGGAAATGGAACACAACCTGTGCGCTAACCATCTGGGTTCCTAAATCTTATTTTATACTCCCTCCGTCCCTTATAGATTTTGCTTGGATATGGCATATCCTATTACAACGAATGTGGACATGAAGTCTGTCCAAATTCGTTGTATTAGGATGTGTCACATTCAACCAAAATTCTTTATATTTAGGGGCGGAGGGAATACCAAGTTCCTAAATCTTATTTTATACCAAATATTAGAACTTACACTTGGACAAAAAAAATATATCATTGTCTGTTTTAACGAGTTCCTCTCATTCCAAAGATGACATAGTCATCCTCTACAAAAATTTTAAACAAAAATATAATTGAACTCATGTGACCAATATATTTTCCATCCATGAAGAACGATAAGTTCCAAAAATAACCAA | |||||||||
gi|29668463|gb|CB664738.1|CB664738 OSJNEd10K08.r OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd10K08 3', mRNA sequence AGATTTTGGTTGGATGTGACG EST sequence (targeted fragment marked with yellow): AGATTCATTGTATTAGGATGTGTCACATCCAATCAAAATCTCTTATATTATGGGACGGTGGGAGAAACTTTGAGTCTTCAACTAATTTTCTAAATTATTTATATATTCGAATTTACCACCAATATATGTTGTTTCACTTGTCTGACAACAGAGTAAATCATCCACCAAGGACCAGATAAAACAGTTAGTGTATAACCTGGAGATTTTTGCCATGCACTCAGAAAACATGGAAGACGAATGTACTGTTTGGTTAACTGACTTTCAAGGCTGGGTGCTAACAAATACGCCATTGCCGTTGCTTCGTGAATGCACTCACATAATTCAAAACCATTATCCAGGGCTGATTTCTGTCGCAATCCTCAGCAACCCACCAAGGATTTTCGAATCCTTTTGGAAGATTGTGTGCTATTTCATTGAGCCAAAGTTGAAAGAAAAAGTGAAGTTCGTATATACTAACAATCCAGAGAGCCACAAGATAGTTGCTGATATGTTTGATTTGGACAAGCTGGAGTCTGCATTTGGGGGGAGGAACACACTTCCATTTGACATGGACAAGTATGCAGAGAGAATGAAACGAAGTGACCAAATGAGAGGAGCTCCCATGCATGCCAATGGCTACTCTTGCTCTACCCAAACCTGACCACATAAAAGTTCACCTTAATTTCTTTTAGTTTCATATAAAGTGGCATAAATATATATACGCCGGTTAGATCTGAATAAGTGATGCATGTCACTCTTAGGTAGGATTTTGAGGCGGGCGGACCTGAGTAAAACTCCATGACAAATTATGTACAAGGAAGAAGCTAATCATGTAATAACCCAAATTTCAGTTGCGTTAAAAAAG | |||||||||