| mature miRNA: AGCAGCGTCGGGCTCGACCGC species: Chlamydomonas reinhardtii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|14234010|gb|BG852826.1|BG852826 1024035C11.y1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDN AGCAGCGTCGGGCTCGACCGC EST sequence (targeted fragment marked with yellow): CACGCGCGAGGCTATGAAGCTCGTGTACAAGGGCAAGGTTCTGGACGATGCCACCACGGTTGGGGACACCAAGTGACGGAGCAGGGCTATATTGTGGTGTTCATCCAGCCCAAGAAGGCTGAGGCCCCCAAGCCGGCTGCCGCGCCTGCTCCTGACGCTGCGGAGCCCGACGCTGCTACCGTTGACTCGGACCCGGATGGTACTACTACCGCGGATCCCACCGACGACGCGCCCGATGACACTCCCGCCGACATGCCCACCGACGACGCTGGTCCTGTCGACGAACCGTAGCTTGACGGTGCCCTTTTTGCATGCTACGCAGCACGCTAACTGCACAACTGCAGAAATACCAGGTATTTTTTTAGTATTAGTAAATCGTTATCTTTTTCCCATTGTAGTTTTTCATTATTATACCCATAACATCCATTACTCATGTGAGATCTAATGATTTCCACTGTGCTCGAAGAT | |||||||||
gi|7615607|gb|AW721047.1|AW721047 833011C04.y1 C. reinhardtii CC-125 -S, Lambda Zap II Chlamydomonas reinhardtii cDNA, mRNA sequ AGCAGCGTCGGGCTCGACCGC EST sequence (targeted fragment marked with yellow): ACGGGCGGCGTTGTGCGGTTGCGGCCGGCGCTGCTCCTAGGACAGCGGCGTGCGTTTTGTCAACTCGCGAGAATAATTTTATAGCTGACCGCCCGTCCATAAGGGCGAGGTGGAAACATGCTGCACTCAACAAGTTGCTGCCGCGGCGCATGCTCGCAGCAGCATGGCCACGTGTTGTGGTCTGAGTGGGGCTGCGAGGCAAGTACCTAATGCTGTGAGCCTGTGCGAATCTTTGGTGATTTCGCAAGCCCTAAGTTGTGGCAGCCGACCTCAGCCGCATGCCAAGAGTTTTGCAGTACGGTACAGTGGTTGGAGAGAAAGGGTATCGCGTCTTGATGGCTCGCAAGGGATTTTGGGGGCGGTCATGCGGCATGACCGCTGCACTCATCATTTCGTTGGGCGCGTGGGTGTTGCGTTGTGTCGCATCTGCATGAGTTGCAGTGAGGAAGAGGACGCGTCCCGAATAAGGTGACGGATTGGGCCGCTTGGGCC | |||||||||
gi|161795367|gb|FC079668.1|FC079668 CACW11580.fwd CACW Chlamydomonas reinhardtii Strain S1D2 normal Chlamydomonas reinhardtii cD AGCAGCGTCGGGCTCGACCGC EST sequence (targeted fragment marked with yellow): CTTTTACGGCAACAAGCCTACGTACCCAGAGCGAAGCGAGAGGAGTGTGCGAGAGCGGCCTGCGCTGCAATGATGGCGGGGTGCAGCGTGTGGGCTGGGCATGCGGCGGCGTGGCGTGATGTTTGCGCTTCGCGGCGTGGCATGCGGCCGTGGAGGCGAGGCAGGGATAGACTCGACTGAATGACGATTTCAATCTCCAAGAGCCGACGGCCAGCGGCCGCTAAGGAGAGCGGCCAACTCGTGACATGGCGAGAGCCGCGTTCCTAGGCTTGCTTGAGGTTGGGTCTTGGATGGGTGCGTGTACAATAGGCCTGAGTCTAGGTTGGGAGGTGGTGGGGACAATGTGCGCCCATGATCCGCATACGGTGTTCGGTTCTCTGCGCACGGATGCACGTACAGATTGCCGAGGCTGGCAACTGGTGGGTTGAGAAGAAGGGAGACTGTGTGATGTGCATGCGGTATGTATGCTATCTTCGGCGGGGCGCTTAACGGGGAATTCCCGTCGCAGAACGGATTCGGTGTGCGTTGTGGCCAGGTGTAGCAGAGCAGCTCTTGGCTAGCATCACATAGACGTGATGTGCACGGGCGGCGTTGTGCGGTTGCGGCCGGCGCTGCTCCCTGGACAGCGGCGTGCGTTTTGTCAACTCGCGAGAATAATTTTATAGCTGACCGCCCGTCCATAAGGGCGAGGCGGAAACATGCTGCACTCAACAAGTTGCTGCCGCGGCGCATGCTCGCAGCAGCATGGCCACGTGTTGTGGTTTGAGTGGGGCTGCGAGGCAAGTACCTAATGCTGTGAGCCTGTGCGAATCTNTGGTGA | |||||||||
gi|22054952|gb|BQ811626.1|BQ811626 1030024D02.y1 C. reinhardtii CC-1690, Deflagellation (normalized), Lambda Zap II Chlamydomona AGCAGCGTCGGGCTCGACCGC EST sequence (targeted fragment marked with yellow): TCGGCACGAGGGATCCGCATACGGTGTTCGATTCTCTGCGCACGGATGCACGTACAGATTGCCGAGGCTGGCAACTGGTGGGGTTGAGAAGAAGGGAGATTGTGTGATGTGCATGCGGTATGTCTGCTATCTTCGGCGGGGCGCATAACGGGGAATTCCCGTCGCAGAACGGATTCGGTTTGCGTTGTGGCCAGGTGTGGCAGAGCAGCTCTTGGCGAGCATCACATAGACGTGATGTGCACGGGCGGCGTTGTGCGGTTGCGGCCGGCGCTGCTCCTAGGACAGCGGCGTGCGTTTTGTCAACTCGCGAGAATAATTTTATAGCTGACCGCCCGTCCATAAGGGCGAGGTGGAAACATGCTGCACTCAACAAGTTGCTGCCGCGGCGCATGCTCGCAGCAGCATGGCCACGTGTTGTGGTCTGAGTGGGGCTGCGAGGCAAGTACCTAATGCTGTGAGCCTGTGCGAATCTTTGGTGATTTCGCAAGCCCTAAGTTGTGGCAGCCGACCTCAGCCGCATGCCAAGAGTTTTGCAGTACGGTACCAGTGGTTGGAGAGAAAGGGTATCGCGTCTTGATGGCTCGCAAGGGATTNTGGGG | |||||||||