| mature miRNA: AGCAGTGTGCAGTTGTGGCTA species: Chlamydomonas reinhardtii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|14239309|gb|BG858125.1|BG858125 1024055H10.x1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDN AGCAGTGTGCAGTTGTGGCTA EST sequence (targeted fragment marked with yellow): NGGGGCGGCCGCGCGGGGGGNNGGNNNGGGGNANAGGGGNCGAACGGGGGGAGAGGGGAGGGGTAATANNGGTGGGCGCGACTGAACACTGCTGNGNGNGTTTGTGAGAGTGAGAGGTGACTCGAGGAGCGCCGCGCCGCTGCGGTGGTGTGATGTTGTGTGTTGTTATGTCTTGTTGTGTGTGATATTGTGTGTATATGGGATGGTCAGCTGTCGGGGAGAGACGCTGTGTGGGNTGAACAATATATTTTGTATAGAGATCGAGCAGTCCCGGTGTGTCGTGNGGTGTTTGCTGAGGTAGTAAGGCACGCAGCTATCGCACACNAGAGAGAGAGAGTGAGCGTCGCGTGGAGTACCNCTGCGGACGAGAGAGAGTACACTAGGAGAGTAAGAATCGAACGACACACACATCCCGACTATGCAGTATAGGATGTGTGAGGTCGACGCGACGAGTGAGGAGGAAAGCGGCAAGAGGAGAGGTGGACGAGAGATACTGAGTGAACTTGAACAGCGCGGGTGCAAATNTGGGAGAGGTAACCACGAGAGAGCGGGATAATAGTGTGGGTGTGGGATATACAAAATTAGGGGCTAGAGAAAACAAGGGCGATCGCAGCGGTAGTGAAGCGAGAGGAGCCAGGAGAATGGAAAGCGGTGAGGTANCAATAAAGAGTGAGATACAGGAGTGGGTGGTACAGTAGGGGGGCAGTAGTGGAAGGGGAGTGAGGAGGGAAGACCNGCGAGGGAGGAGGGGACGATGTAGGGTAGTGGGGAGAAGGGAAGAACAGGAAGAGAGGGAGGTGGAAAGTAGAAGAGCGATGAAGAGAGAAGGACGAGGGAGACGCGGGGGAGCTGAGAAGGAGTTTGTGTTGTGGACGTGCGAAGGTACTTGTGACTATGGTTGTGCATTGGTAAGCGGGTTTGGTGCCGAGAGGGAGTGATGGTGGTGAGTTGGATGAATGAGTGGTGGTGGGGCACAGGCGGATGAGTTGTATGGCCTGGANTGGGGGTTCGCATACCGGTACGGCTAGCTGCANAGTGACTAGTCTATCGACGGCGTGTTCGACGTAGNCTCGTCGAAGTGGTACAGTNTTGCGTGGTGTTGTNGTGCAGGGAGATGGGAGCTGCGAGATGAGTCGCGTCGATACTCAGGGANCGCGGTCNTCGCGCGGCGAGCTAGTGTAATGCGGTGTGAGCGTAGAGGATGTGNTGTGNCTAGCGACGAAATGACAGAGACACATAAATCAGAGGAGATCCTAAAGGCACAGAGATGCGCAGATATGACATAGCACGCNGCAGTACTCGAGACAGTCGTCGCGNTGATATGCGCGTGAGCGTGGGTCGGTGACNNCGAGCGAGTGGTCANGNTGGACGGGGGGAGACGACGTGGTGAGNTNATCGTGCGGTGACAGTGTAGGCGCTCGATCGNGACAGCGATGGATCGTGACAGCGTGTGANATGCAGGNAGCCGGANCGGCTAGTNCATATGATGACGTGACGCTGTGTATCGATCGACGTTAGATAGTACTGATGCGATCATATTACTNACANNGTAGCTTACACGCATGGNTGTGCGNGATGNCGCNNAGGGATGAGNAACGAACGGAGGGCAGGAGGAGNAGAGCAGATGGTGGGGNANAGNGACATACACGACACAGGAGCAACAGACGCACGACGTAGNG | |||||||||
gi|16431254|gb|BI996480.1|BI996480 1031038F10.x2 C. reinhardtii CC-1690, Stress II (normalized), Lambda Zap II Chlamydomonas rei AGCAGTGTGCAGTTGTGGCTA EST sequence (targeted fragment marked with yellow): TTTTTTGATCACGTACGTCACACTTCGTCACAGGTGCAGCAGCTAGCAAAATGTACGGATGTACCAATCCCGGCGGCCCGTTGCCGTTCGTTGCAGACAAAGTGTCGCCTCAATTGCACACTGCCTCTCGCTTGTCGACCTACAAGAGCTCCATACAAGCGTACCCGCACCATCCAGCCAAAACGGTGTTTCCTAGCCTACTTGCGTGTAAAGCCTTTCCTGCTGCTGGGCCACCCATGCGATCGGCAAAATATAGCAGCTTAGCAAAACACAAACGGCTTTCAAAGTGCGGGATTAAATGAGGGTAGGTGCCCTGATCTGGTGCGGATGTGGTCGAAGAAGTGGTCAGTAAGATGAATGGCGGCGAGCATGGCTCTCTATCTAGGTACAGTAATCAACGCAGTGGCTGGCATCTAGGCTACACGCTGACTAATACTGGTACTCGATACTGCATTCCTGCTTCTAGCTAGACAACTATTGGTGCTGTGAGCGTCATTGGCCCTCATTGCAACCACCACAGCGGCACCGCCGAGCCAACGAGCCCGGTGGGCACGTGCGTGCGCTCCGGAGCACGGAGCATGGAGCTTGACCAGGGCGCCCCCGGCGTGATGCATG | |||||||||
gi|14242286|gb|BG861102.1|BG861102 1024075F10.x1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDN AGCAGTGTGCAGTTGTGGCTA EST sequence (targeted fragment marked with yellow): CNNNNATTNCATNNTAGGGNNNGNCACGCCCACGGNNGGGNGNNGNCGCCCCGGNGNNNCCGCCNCNNCCCCCTCCTCGAGGNGNTTCGCNGTCTGCAGGCTGTCGTCTANCTCATCACGCTCTCTGCTNTCGNCTGTANTCTAGTCGCTATCGCGTACTGCCACGACCCGAAGACNTGGNNNNCNCGGCCCCAGANNAGGCGATGGGCCACAGGNNCAGCGNCGNCGGNNGAGGNNNNAATTATGAAGGTATGGTGCGCACGATCGACAGATGCGACCGCACTGCACACCACCGCNAACTCAGTCTGAGAATAATAGCGAGTCACTGCATCTACTAGAGCCACGACTACGTACACTGCNTNTAGATGAAGACTTCATCACACGAGNTGACGCGTACGAGCGCGTGAGAGTAGAAGAAGTAGAGAGAAAGACACAGAAGTAGAGATGANCTTTATAATCAGATAGCATCACAAAGGAACATACAAGAGNGATAGAGACTCGACTNGAGAAGGCAGCGGCCAGAGAGAGCATGACGCANCNACTAGATCGTACGCTACTTACTTCGCTCNNCGNNNNTTTTCTGTATCCNCGTCAGCGNGCTTACGTCCGCCCTTCTGNTGTCATGTGTNTCTTCGTCGGTCATCCAGCNCGNCACNTTATCTNTATTTGTGGTGCGTTATGGNGAGAGATAGTGCTGTGGTAGATGCGTATGNGACAANATACAGCGTACGATAAAAGATCGAAGTACACGAGAATAGAGTAGAATATGAGAGAGNGAGTAGTACGGNGAGAGAGAAAGAGGGTATGTGTGCGAGAGCGTAGAGACGAGNAGTCNAGACACATCGCAGGTCCTGAATCGCGCAGCCGCCACACTNTCGTATATCAACGACNTGNNNAATGCGCNATTNNNTANNCCGCNCCNCCTCCACATATGCAAACACNCACANCATTTAACATCNATNNNCCGTTCCNACACNANNNATGAGTNTCTCCNTTNNTNTTACATATTGCNCANCAAACCGTGTCGGCNGCGAGTTTAATATACGTCGCAGTCGCAAGNGTACACTGCTGTCGATACATTAGCGTCGATNTNGTATATACTGTACAAGTGNACCACGCGACGCAGTCGCATAGGACCANTNGCAGCCGCNCAGCGACGAGTNAANATGAGCGAGTGAATNCNATGTCAGATGCGATCATACGATCAGGACGTAATACGTGTNATGAGCGTAGAGACACTCAGACGTACGTACCTCCAAAATGAGCACTAGANAGNGAGCGCNTATCACAGACAGCGACGNACGTGATGCGATGCACACGGAGCACNTGACGAGTGNATGTTAGGTAGTANANCGTATCAGGTGATACGCAGTTTATTGGTAGTATAGTGATGGGAGACGAANGAGTCTATGGGTGTGATAATAGTACGATAGACGACGAGATGCATGNTGNGTAGTGATTCTGTGCGTTCTAGCGTCGTCGGCTTCGCCCGTTTCAGTAGCGCTCNATATGCTCATGCNCATTGTGAGTTTATCCGCCNTCAGTCTACATGAGCTGGTTNTAGATATGGTGGAGATACTAGCANTATATCTCGCACTATATGATTATTTGTAGCATGATAATATACACGTGTGTGACATAGTTGTGGTCTCCAACCTACTCACGTTAGATNAGATGTAANATGCGGTAGGAGAGTACAGGGTGTGNATTGTGCGACAGACGTACG | |||||||||
gi|9460248|gb|BE453137.1|BE453137 894068F06.y2 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDNA, AGCAGTGTGCAGTTGTGGCTA EST sequence (targeted fragment marked with yellow): CTGACCAGTTAACCCTTAAATATAGACGCACACTCTCTACTCCTGAACGTGCTCCCGCCCTTCGCCACTGCCACCTCACCGCGTTCGGCTGCTTATATAACGTCGCTAGAAGCTTCATACAAATACAACCAATATTCTCGACAAATGCTGCGCTGATGGTTACGTAGGTCGAGTCGAGCACTCGTTTAGCGTCTAGCTTTCGTAGACAGCTCCCGGCCAGCCCTCTTGCTACTGCTAGAATTTGGAGTCACTTATGCGGAGGAGCTGAACAAAGGCCAGGAGAGCGAGCGGCGCGACTGGCAGCAAATGCGCACTGCTTGGTGACACAGCTGCAGAGGAATTGATGTGGCGTGGTGGCTTGGGGTGCGAGATGGATTTCGCGACTTCCAGCCACCGCCAGCGCTGGCTCTACACTCGGACGGGGTTGACGGAGGAGCGACACAGGCTGCAGCAGCGGGTGGTGGACGGACTGCGGCAGCAGCGGCACGCGGCAGCGGCAGCGGCGGCGGCACCCGGTGACGGCGGCGGTGGGGCCGAGGTGGCGGGCAGTGCCACCAAGCGGGCACGAGAGCCCCCGCCTCTGGCGGCACTGGGCGAACTGCTGATGCTCAAGTACTACCAGCAGATCATTCAGGAAAAATGCCGCGAG | |||||||||
gi|14224184|gb|BG842984.1|BG842984 1024001A12.y1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDN AGCAGTGTGCAGTTGTGGCTA EST sequence (targeted fragment marked with yellow): TTGGGAGAAAGGGTTGGGTTGGGGGAAAAAGGAGGAAGATGAAAAAAAAATCCTTATAAGAGAAAAGAAGAAAACGCCGGGTTTGNNGNGGGGGAGAGGAGANGGGNNGGGNNNNNANGNNAAAAAAAAAAGAAAAAGNGGAAGAGGNNGGGGGNNGAAGAGAAAAAAACGAACNCGGCGGGAGCACACGGCGGGGCCAGCGGCGAGGGCGNGGNGGCCGCCCCGCACACCGAAAGCGGCAGCACCCGACGCGAAGCACAACAAAACACAGGACAAACGCCCGGCCCACCACCAGACCCCGGCCGGCACGAGGCCACGCCGGCAACCACACCCCNNCCGAGAGCCGCCGNGCCGACGAANGGANAAAGAGNGAAAAAGGGGCGAGAAAACGGGACGGAGACAGGGCGAGANCACAAGCACAACAAAGAGCCAACACCCGCCAANAGGACGCGCGGAACGACAAAGCCGCGCNCCGCCCGGCGGCCGACCCGCCGGCACGCCGACGGACCACACGCAGCGAGACGCCACGCACCAGAGCCCAGAGCGCCACACGCACACCGCACAGCCCGCAGCACCACCGCCNCCCCAACAAACAGGGCAACAAACGACAGACAACACCAAAGGGACGGGCGGCCCCTCCCACACAAAGAGCGCGAGCGGCGGCCGCGGCGCGGGGGTCGGCGCGCGCGCGCGGGGACGGCCCGGCGACGGCGCGCGCCGACGNCGAACAGACACAACAGAAGGGACCACGAGCAACGTAGCTCGGTGCGTGTCAGGCATGGCTGCATAGCGCTTCCGCGCGCGATGCGTCGAGACACAACAGCTCGCTTCGCGGCGTGGACTGCCTCCGCTGATACGCCGAGACAGCCCGGGTGCGACCTTGCTCGTATCGGGTACGTGAGAGTTGTAGGTCTAGTGGGCGGAGAGAGGTGATAGTCGAGCGTGTGCGTGTGAATGCGAGTCGAGCGTGTGGAGGGCCAAGAGTTCAANATCCCACATTCCCTTCTAGCCACTCTCGACAAACGCANCACCACACAACAACCACGTACGAATGATGACGCGNGCCGGGGCACGTGATCACGCACCGCGACAGCGGAGCAGAAGAACACGCGCGTAAGCGAGAAGGAGGANAAGACATCGCTACTGCCTCCGTAGCACAACTGCACGCTGCACTCACTACTATTCACCTCCGTTACACCACAACACGAGAGTTAGAAGAGGTACACAACTGNTGATCGAACCTCNTCNATCAAGACACCGTCCCGCAGCAAGCGACCGCACGCGTGGAGAAGAGGACAGAACACAGAGACGGATGCGAGAAAAACATAACGAAAGACAGAAGAAAGAGAGATATANGAATGAAGACAAGCACACGAGTGAAGACGGCGATTGTGCTAAAATG | |||||||||