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mature miRNA: AGCCAAGGATGACTTGCC
species: Catharanthus roseus
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|116655635|gb|EG556651.1|EG556651 CR02022A02 Leaf CR02 cDNA library Catharanthus roseus cDNA clone CR02022A02 5', mRNA sequenc

AGCCAAGGATGACTTGCC
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TCGGTTCTTACAGAAAAG

EST sequence (targeted fragment marked with yellow):
CTGTTCAAGCCAATGGAGATGTTAAATTATCAGAGAATGGTTCAGTTGCAAAATCTGGGGATGTGCCAAAGGGTGCTAAACCAATTTCTGAGAAAATTGTGTTAAATGGGGTTGCTAGTTGTTGTTAGCTTCAGCCATGCACAATGGGCGGCCAGCGGATTGCAGTCTCCTTGTGGGGGAAACATTAATTTGCAGGATGGTCTAAAGCTTGAAAAGACATTCTTGGCTATATTCTAGGCATTGGGCTGCCCTGTCCATTATGCCCGGCTGCCTCGGGCATTGATTCATTCACAACAGATAATATAAAAGCCTAAAAGATCAAGGTTGTGTGGTTTGGCAAGGGCTGGACATCTTTTAGGGAGGAAAAATGAACCCCGTTTTTCTACTTGGTGACGGGGTTCAGCTTTTATAGTTGGTTAGCTTTCTAACAAACAGGTTTCGATAATAGGGTTTGGGTTGTAGGGGTTATATT