| mature miRNA: AGCCAAGGATGACTTGCCGG species: Ipomoea nil database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|27242050|gb|BJ560230.1|BJ560230 BJ560230 Ipomoea nil mixture of flower and flower bud Ipomoea nil cDNA clone jm30b14 5', mRNA AGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): ATAACGAAACTAGGGTATTGTTCACCAGTTCTTTGCTTCTGCTTGCAGAGGGAGGGGTTTAGAGAGAGAGAGAGGGGAGAGAAGAAAAATTTGAGAGGAAGCTGAGACATTTGGATTAGTCCTTGTGTCTCCTCTACCTCTCTATATTTTTCTGGGCATCATTTCTGTTTTAGATTGGGTTGTTTTTGGGTTTTGTTTGGGAGTAAATGTTTGTTGAGGAAAGATTGAGTCTTTGAGCGGAAATTGTTTGTTTACACACTCGAAAGTGGAANGAAAACAGGTTATTTTTGATGAATTTTGGAGGGTTTCTGGATAATAGCTTTGCTGGTGGTTTTGGCGGCGGCGGCGGCGGCGGTGCAATGCCCAGTGGTCCGGTAGCTCATCCTTGCCTTGTTCCTCAGTCTCTTGCTAAGNCCATGTTCAACTCTCCAGGACTCTCTCTANCTCTCCAA | |||||||||
gi|27260748|gb|BJ578920.1|BJ578920 BJ578920 Ipomoea nil mixture of flower and flower bud Ipomoea nil cDNA clone jm39n07 3', mRNA AGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): AAATGGAGGAGGAGCCTGTNTACGTCAACGCGAAACAATATAATGGGATTTTAAGGCGAAGGCGGGTTAGAGCTAAAGCAGAACTTGAAAAGAAAGCCATCAAAGCCAGACGGCCATATCTTCATGAATCTCGCCATCAACATGCACTGAGGAGGGAAAGGGGGTCGGGGGGCCGATTTCTCAATACAAAAAAGCTAAATGATATGAATTCGAAAACAGACGAGCATACGCAATCTGGTGCAACTGCTACAACAAACTCGGGCCACTCATCGGGTTCAGAGCATTTGTGTACGAACAGCGAAGGGCAGTCTGCTGTAAAAGAAATGTGCAGAGCAGACAGCCATGGCTTCCCATCGGTGCATTTTACAGAGTCGAGCGGGAATGAAAAGGGAAGTTTTCGTCATGGTCATCAAAACTGGAGCTTTATGGGAAACCAGGCTCCTCACGGTGCGCCACCCAGCAATTGAAAACTCGTTCCTGTGTAATGGAGGGGTAAGACAATCCATCCCTTCTTACACGGGTCTGGCAATTCATTCTTGGCTTGTTTTACCTATGTGGGCAAGATGGGTAGAAACGAATAGACTCGGGCTGTGTCGGTCAGCCATTTGTTTCTATTGCTTCTTCCCAGTGTTGTAGATATATGCTCTGATATATAGACTGAGAAGTTGTAGTGTGATTATTTTGTGGTTGGCTTACCACAAAAAAGATAGTGGTGTTGAACTTATAGACAACAAAC | |||||||||
gi|27243800|gb|BJ561980.1|BJ561980 BJ561980 Ipomoea nil mixture of flower and flower bud Ipomoea nil cDNA clone jm35i04 5', mRNA AGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): GTATTATCTTCACACCCATTTTCCCCTCTCTTTCTCTCTCTCTCTCTCTCTCCTTTGTCTTTGTGGGTTTCTCCAAAACAAAATCCGCTTTTTAAAGTCAAGCATGCAGTGATAGATGCATAACGAAACTAGGGTATTGTTCACCAGTTCTTTGCTTCTGCTTGCAGAGGGAGGGGTTTAGAGAGAGAGAGAGGGGAGAGAAGAAAAATTTGAGAGGAAGCTGAGACATTTGGATTAGTCCTTGTGTCTCCTCTACCTCTCTATATTTTTCTGGGCATCATTTCTGTTTTAGATTGGGTTGTTTTTGGGTTTTGTTTGGGAGTAAATGTTTGTTGAGGAAAGATTGAGTCTTTGAGCGGAAATTGTTTGTTTACACACTCGAAAGTGGAAGGAAAACAGGTTATTTTTGATGAATTTTGGAGGGTTTCTGGATAATAGCTTTGCTGGTGGTTTTGGCGGCGGCGGCGGCGGCGGTGCAATGCCCAGTGGTCCGGTAGCTCATCCTTGCCTTGTTCCTCAGTCTCTTGCTAAGTC | |||||||||
gi|27248643|gb|BJ566823.1|BJ566823 BJ566823 Ipomoea nil mixture of flower and flower bud Ipomoea nil cDNA clone jm12g17 3', mRNA AGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): CNTCAAAATTTGACAATTAAAGATGGAGGATCGGGTTGCTGTCCCGTANTCGGGNCACAACCCTGTCCTCGTTGCAACCAAACCCGAAACCTCTGCTCTTATTCCCATTTGGTTGCAACCATTAGGTAACTCATCCTTGGCTATCAATCTTGGAGTTCATCCTTGGCTATCTCTCTATCTGTGTTGGCAAATCATCCTTGGCTTACAAGCATTCTGGCTGCCTCTATCATCCCTGTTACACCCAACAATCTGGGCACTGGTTTGAGGCTCTTCACCCAGAATGCAACCTCTTTTTCATCTTATATATACATACATAATCCTATCTCCAATAATACATATATCATGAAGATCCAGATATTGGGTTCATGATATGATGTTGCAGATTTGCAGAAAAACTTGGTGTGTTGTAAAAGATTGATACAACTTATGTGTGATTTCTGGTATTGTATTTGACATAAATATGGAT | |||||||||
gi|74394456|gb|CJ749276.1|CJ749276 CJ749276 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf47h22 5', mRNA sequ AGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): GGCGTATTATCTTCACACCCATTTTCCCCTCTCTTTCTCTCTCTCTCTCTCTCTCCTTTGTCTTTGTGGGTTTCTCCAAAACAAAATCCGCTTTTTAAAGTCAAGCATGCAGTGATAGATGCATAACGAAACTAGGGTATTGTTCACCAGTTCTTTGCTTCTGCTTGCAGAGGGAGGGGTTTAGAGAGAGAGAGAGGGGAGAGAAGAAAAATTTGAGAGGAAGCTGAGACATTTGGATTAGTCCTTGTGTCTCCTCTACCTCTCTATATTTTTCTGGGCATCATTTCTGTTTTAGATTGGGTTGTTTTTGGGTTTTGTTTGGGAGTAAATGTTTGTTGAGGAAAGATTGAGTCTTTGAGCGGAAATTGTTTGTTTACACACTCGAAAGTGGAAGGAAAACAGGTTATTTTTGATGAATTTTGGAGGGTTTCTGGATAATAGCTTTGCTGGTGGTTTTGGCGGCGGCGGCGGCGGCGGTGCAATGCCCAGTGGTCCGGTAGCTCATCCTTGCCTTGTTCCTCAGTCTCTTGCTAAGTCCATGTTCAACTCTCCAGGACTCTCTCTAGCTCTCCAAACGGGTATGGAGGGCCAAGGAGAGGTGGCGAGGATAGGTGAGAGCTATGAAGCTAATAACAATGGCGGCCATAACGGCAGTG | |||||||||
gi|74417218|gb|CJ772038.1|CJ772038 CJ772038 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf44i22 3', mRNA sequ AGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): GGATACTGTGTCTGATGAAGATGGTTTAGAGAGTGATGGAGATGGGTGTTGGCCCTTTCAAAGTTTTGTTGAACAACTCATGGTTGATATGTTTGATCCTTTATGGGAGATTCGTCATGGCAGTGTCATGGCATTAAGAGAGATATTAACCCATCAAGGTGCAAATGCTGGAGCTATTATGCCTGATCGCAGCCTTGATGTTGGATTAGGTTCTATTTTAAAAGACAGGGTTGTTGAAAAGCAGGAAAGTGTAATTGATTTGAATATACAAGTTCCAGTTGATGAGTCTGAGCCAGCTTTTAAGAAGCCTAAGATTGAAGATGCATCACCTCTTCTGATGGATACAATTCCTTCTGCCAGCATGGTTGGTAACATTGACAATATTCAAGTGAAAGTCGAAGATGTTGGATTGAATTTGCCAGTAAAGCAGGAAAATGGTGAATTTAATGTTGGCTCTCTGAAGATGGAGATTCAGTCTAATTCCAATAGTGAAAGTTCTTTCAATAATGATATGGTAGAGGCAAAGAGCTCCTGTGAGGACAATATCTCCTTAGAAAAGATGGATCTACCAAGAAATCTTCCAGAAAATTGTGAGCTGATGAACTTGGTTAAATTGGCTAGGCATTCTTGGCTTAAAAATTCTGAATTTCTTCAAGACTGTGCAATTCGTTTCTTGTGTATATTGTCCACTGGACCGGTATGAAAT | |||||||||
gi|74411812|gb|CJ766632.1|CJ766632 CJ766632 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf47n12 3', mRNA sequ AGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): GACATTCAATTGCTTGCNTCCGAATCTGTACACAGACCCATATTTTATGGGGATGATGGCCTCTTATGGTCAGCCATTGGTTCCTCAGTTTCTTGATATGCAACAAGCTAGGATGCCTTTGCCACTTGAAATGACTCAAGAGCCCGTTTACGTGAATGCCAAGCAGTATCATGGGATCCTCCGGAGGAGAGAGTCACGTGCTAAAGCAGAATCTCAAAAGAAGCTAATAAAAGTTAGAAAGCCGTATCTTCACGAGTCCCGACATCAGCATGCTTTGAAGAGGGCTAGGGGTACTGGAGGGCGTTTTGCAAAGAGATCTGAGACAGCTGCTTCGAAAGAAACAGGCTCTGGTGCAGCTGCCGATGCTTCAAAAACCCATCAAGCAGCAAAGGCGCCCGATCCCCAACTTCCATCGATAAATGGAGGCAGCAGTTACTACGTTGGAGGTTCATCAGGTGGACGGGGGAGTATTGCAACTAACGCAGCATAGGAAGACAACAGAAGTGGAGTTGTTCTCGATCTTAGCTTTTTCAAGCTGGGCGGCAAATCATTCTTGGCTTTGTTATGGTTTAGGAAGGGGGCGGAGTGTTGTTGGCCTTTTAGTTTCTCGCGATTTTCGCTGTGTTCTTCCCTCTGTATAAAGATTGGTAGGATTTAGATTGGGTTGTGTTATGTAGGTAGGAGAGACCATCTAAAGTGTAGGCAGGAAGAGCGTCTACCATTACTGCTTGCATTTTCTTTTCTCACATAGACATAGCTTAAAAGTCCTCCACCTGTGGAGCTGAATTTGAT | |||||||||
gi|74401407|gb|CJ756227.1|CJ756227 CJ756227 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf11m18 3', mRNA sequ AGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): CAGATCCATACTTCAGNGGCTTATTTACTGCTTATGGACCTCAGCCTTTCCTCAAATGGTCGGGATTGCACCTGCTCGGGTACCATTGCCACTTGATCTTGCAGAAGATGGACCGATTTATGTCAATGCAAAACAGTACCATGGAATACTAAGGAGGAGACAAATACGGGCAAAGCTCGAGGCGCAAAACAAGCTCGTGAAAACTAGAAGGCCATACCTGCACGAGTCCCGCCATCTTCATGCAGTGAATAGGGTTAGGGGCTCGGGCGGGCGATTCCTTAGCACGAAGAAGCTGCGAGAATCGCTGTCAATGAACTGCGGTTCTGGAAGTGATTNTGCGAAGCACCACAGGGCTTCGACTGCCTNTTNTACTCCACACGGGATGTCTCAGGGCGTTCATGGCAACGTCATNTTCCAGCCGCCCGATCATCACAGGCTCTCGAGCCTGCCTTCTCACATGGCGGCCGCTGCTGCTTCCATGCAAGGCGGGGGCGGGCTTACTTGCAATGCATATTCTCCGGGTGTCCGGTGAGGAGTTCCTCACTGGGCAGGCATTTCATCCTTGGCTATTGTCACTTTTCCTGTGAAGAATTGAAGTTTCTGTGTTTAGTTTGGTTCCTTTTTTTTTGTTTTTTTTTCTTAGAAACTGCAATAAGACATGCTTGACCTTTTTCTTTTTGATGACTTTAAGATAATGCTTAGTCTGTCGTGTAACCATTAAATTTTA | |||||||||
gi|27248643|gb|BJ566823.1|BJ566823 BJ566823 Ipomoea nil mixture of flower and flower bud Ipomoea nil cDNA clone jm12g17 3', mRNA AGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): CNTCAAAATTTGACAATTAAAGATGGAGGATCGGGTTGCTGTCCCGTANTCGGGNCACAACCCTGTCCTCGTTGCAACCAAACCCGAAACCTCTGCTCTTATTCCCATTTGGTTGCAACCATTAGGTAACTCATCCTTGGCTATCAATCTTGGAGTTCATCCTTGGCTATCTCTCTATCTGTGTTGGCAAATCATCCTTGGCTTACAAGCATTCTGGCTGCCTCTATCATCCCTGTTACACCCAACAATCTGGGCACTGGTTTGAGGCTCTTCACCCAGAATGCAACCTCTTTTTCATCTTATATATACATACATAATCCTATCTCCAATAATACATATATCATGAAGATCCAGATATTGGGTTCATGATATGATGTTGCAGATTTGCAGAAAAACTTGGTGTGTTGTAAAAGATTGATACAACTTATGTGTGATTTCTGGTATTGTATTTGACATAAATATGGAT | |||||||||