| mature miRNA: AGCCAAGGATGACTTGCCTG species: Populus tremula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|23984003|gb|BU819801.1|BU819801 UA47BPG05 Populus tremula cambium cDNA library Populus tremula cDNA 5 prime, mRNA sequence AGCCAAGGATGACTTGCCTG EST sequence (targeted fragment marked with yellow): GGAAGAGGAACCTGTTTATGTAAATGCAAAACAGTTTCATGGTATTATGAGGCGAAGACAGGCACGTGCTAAGGCAGAGCTTGAAAAGAAAGCAGTAAAAGTTAGAAAGCCATATCTTCATGAGTCTCGACACCAGCATGCTATGAGAAGGGCAAGGGGTTGTGGAGGTCGTTTCCTTAATACAAAGAAGCTTGATCATAATGCTGCCAGTCCAACGTCAGATAAAGGTACCGGAGATTTGGATTCCTCCGGTGATCTGCAGGAAGGAAAAGGGTCCATGGTTCAAGACATCCAAACACACGCTTCCTCCAATGGCCATGGTAATGGCAATGGATTCTCATCAAGATATCGTTCATTATCAGATGATGGCAGCTTCTTGGGTCAGCAGAAGGGAACCACACATGGGAATGGGGTGTCTAATGGGAACGTCTCCATTCATTAAATTTCCACCTTGAGTTACAAAGCTGGAGGCATCAGCCATGTCCAACTTGGGGGGAGGAACTTTCAGCGTGTGGTGTATCTCAGGCAATTCATTCTTGGCTTTGGGTCTTTGTTACTTGGTGCATGCTGGTGGTGTGAGTGGAGCATATCATATGTGATGGACTTCTTGCTGTCTTCAGACTCGAACT | |||||||||
gi|60707333|gb|DN497143.1|DN497143 Q035A07.5pR Populus dormant bud cDNA library Populus tremula cDNA clone Q035A07 5', mRNA sequ AGCCAAGGATGACTTGCCTG EST sequence (targeted fragment marked with yellow): AGCAAAAGGAAACCCACACGGGAATAGGGTGTCTAATGGAGCTGTCTCCATTCATTAAACTTCCACCTCGAGTTGTACGGGGCCCTTCAGCATTGCTACACTGGAAAAGCTGGAGGCATTAGCCATGTTCAACTTGGGAGGAAACTTTTCCTGTGCTGTGTTTCTCAGGCAATTCATTCTTGGCTTTCGGTCTTCGGTTACTTGGTGCATTCATGGTGGTGAGAGTGTTGCATATGTGGTGATGGACTTCATGTTGTCTTCAGACTTGAACTAATTTCATCTCTCTTCTTTTAGTCGCTTCTGTAAAGATGGCAAAAACTTGTGCATCTACCTAGTAGAAATTACTCTCGAATGTGGTAATTCCAAATGGTCTGCATTTGAACTTTCATGTGACCTCTTCTTTATGTGTGAGCAAAGGGTTCTTCTACCCTAACATCTCAATGACGCTAAGAGTTGGCTGTTGTTCGGAAAAAAAAAAA | |||||||||
gi|60697194|gb|DN487510.1|DN487510 Q033G01.3pR Populus dormant bud cDNA library Populus tremula cDNA clone Q033G01 3', mRNA sequ AGCCAAGGATGACTTGCCTG EST sequence (targeted fragment marked with yellow): GTCAGACACAGCATCACAGCACAGTCAACATGCAGACAGTAATTGATGGTTGCAGTGCAGTCAGCATGTGGCTCCCATGCACTGGGGCACTTATTACTGCTGGCGCATGCCTTCGCCTCTGTTCAGCAGCAGCACATGTTTCTTCAGACGGGTACAGAGAAATCCGAACGCAAGCCTGGAACGCGCTGTACTTTAATAAATGTTTGGATGCTGTGAAAATTGTGAAGAATTTGATACTATGTCTGCAAAGTGCAATGTTGTAGATGAAATAGCTAATAGGCAATGATTCCAAACATGTGCTGCATGTGGCAGCGTTTGTCAATGTACAGAGATCAGAAAGTTGAGTTTGCAGTGTGACAGATTTGGCATAAAAGGTCATTGGCTGTTGTATTTCGGACATTTCGGTCTCAGCCTGTCATCCTTTCTTCAGAATTTCTTAGCCTAGTCATCCTTGCCTCAGATTTTGTTGAACGGCTTGTGCTTGCAGTCCAGCTAGGCTGTACTGACCATTCAATGCATTGCCTGGTCCCCATGTAGTCGTGAAACAATTTTTGGTAGCTTATGCCCTTCTCTGGTACCTTATGGGGCC | |||||||||
gi|38580264|gb|CK095939.1|CK095939 UA37BPE06.3pR Populus dormant cambium cDNA library Populus tremula cDNA clone UA37BPE06 3', m AGCCAAGGATGACTTGCCTG EST sequence (targeted fragment marked with yellow): GGCAGAGCTTGAAAAGAAAGCAGTAAAAGTTAGAAAGCCATATCTTCATGAGTCTCGACACCAGCATGCTATGAGAAGGGCAAGGGGTTGTGGAGGTCGTTTCCTTAATACAAAGAAGCTTGATCATAATGCTGCCAGTCCAACGTCAGATAAAGGTACCGGAGATTTGGATTCCTCCGGTGATCTGCAGGAAGGAAAAGGGTCCATGGTTCAAGACATCCAAACACACGCTTCCTCCAATGGCCATGGTAATGGCAATGGATTCTCATCAAGATATCGTTCATTATCAGATGATGGCAGCTTCTTGGGTCAGCAGAAGGAAACCACACATGGGAATGGGGTGTCTAATGGGAACGTCTCCATTCATTAAATTTCCACCTTGAGTTGCAAAGCTGGAGGCATCAGCCATGTCCAACTTGGGGGGAGGAACTTTCAGCGTGTGGTGTTTCTCAGGCAATTCATTCTTGGCTTTGGGTCTTTGTTACTTGGTGCATGCTGGTGGTGTGAGTGGAGCATATCATATGTGATGGACTTCTTGCTGTCTTCAGACTTGAACTAATTTGCATCTTTCTTCTTTTCGTTGCTTCTGTAAATAGGCAAAAACTAGTGTATCTACCTGCAGGAATTAATCCCAAATGTAGTAATTCC | |||||||||
gi|60696529|gb|DN486911.1|DN486911 P073B01.3pR Populus petioles cDNA library Populus tremula cDNA clone P073B01 3', mRNA sequenc AGCCAAGGATGACTTGCCTG EST sequence (targeted fragment marked with yellow): TGAAATCGACACTGCTATCGGCAAATTGGAATACAGCCGTGCCAATGCATTTTTGGACTTTCCATCACCAACACCCACCAACACATCAAAGAGTAGCATGAGCTCCGATTCAGGTGCAAATCCTCAATACGATGTCAAAATGGCAGATGGGGCTTACAGGGCAGGCTGTGCATCCTTGGCTGCAGGGAAACTTGATGAGGCTCTTCAATATTTGAACGTCTCTCTCTCGAAATGTCCTCCTGATAAAACCTCTGCTGTTGCCAAGCTTCAGTCTCTTATTTCTCTTACTTCACAGCAACTCCAGAAATTGCCCACTTGACTCTTTCATTTTTGTTGGCTGTCTGAATGCTTTCCCAACTTCCCGTGCTATTATTTGGCCTAATCTAGTTGGTGATGTGGGAACAAGAGGTAGAGAACAGAGGAAATGGGAGAAGCAACGAGCCATCAACATTTCCAATAGTTGAGTGTGATCTTTATCAATGCAGTGTGTGCCATGTTCTTCTCACTTGCTCTTAGCTTATTAGTGGTTTCGACGTCAGGATCAGACATTGAATTAGCTTTGGAATTGTTCTGTATATGGAACTTAAATGAAATGATGGATCCATTTAGAT | |||||||||