| mature miRNA: AGCCAAGGATGACTTGCCTGT species: Lactuca sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|90520830|gb|DY982688.1|DY982688 CLSS5012.b1_G05.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSS5012, mRNA sequence AGCCAAGGATGACTTGCCTGT EST sequence (targeted fragment marked with yellow): GTCGTTTTTCCTTTTCACAACACCCTCTGCCGGTAAATCTTACTGGCAAATTGCATCAACTCCATGTCCACTACAGCCATGAGAGCAAATTCACATGATTCATCTTCACAAGAACAATCATTAGACAGGGACACTCAGTCTGATGAAGTTTTAAGTGAAGAAGAAGATGATGTCAGCAAAGAAACACATAACAATGTGTCATATTTTCCTTCAGATACATGTGCACAAGAGCACCAAAATTTTCAGCATGACATACTTCCAAGAAATGAAGAAACCCTTTCACAGCCACCACAACTTGAACTTGTCAACCAATCAGTTGCTCCTTATTATGATCCGTATTATGGTGGGATGATGGCAGCAGCTTATGGTCAACATTTTGTTCATCCTCAGTTTGTTGATGTGCAACAAGTGAGGATGCCATTGCCACTTGAAATGGCACAAGAGCCTGTTTATGTGAATGCTAAACAATATCATGCAATTTTGAGGCGAAGACAATCACGTGCTAAAGCTGAGCTTGAAAAGAAACTTATAAAAGATAGAAAGCCTTATCTTCATGAATCCCGGCATCAACACGCGATGAGAAGAGTGAGAAGTTCCGGTGGTCGATTTGCAAAGAAAACCGAAACCGATGCTTTAAAAAATACAAGTGATGACGTGGCAACAGGTATGAAGCGCGTGCACTCAGAGCCAGCTGTAAGTTTCGGGACCCACACCAACCAAGAAACAAGGGGTGGCGGAATGGTAAATTCATGCAATGGTGGGGCCCTCAGGTATGAAAACCAAGATGGGTTTCAGGAGGGAGGTTCTTTAGGGCAGCAATGGTCAACAATACCTTCTAGTCAAAATCACAGAGGGCAGTTGCCGTGAAATGAAATGATATGATATATCGTATGATTTGGCTGGCAAATCATTCTTGGCTGTTTTTATGTGG | |||||||||
gi|90521804|gb|DY983662.1|DY983662 CLSS6276.b1_H09.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSS6276, mRNA sequence AGCCAAGGATGACTTGCCTGT EST sequence (targeted fragment marked with yellow): CGCGGGGATTCCTGATTTCTCTCTCTACTTTTGTTGCACTCTCAGTTTCACCATTTTTCTCGCTTTATCTTGGGTTTTAATATTTTTCAAGTTGAAAGATGGAAAGGGATTTCATGGGTTTGAATTCGAAGGATTCAGTGGTTGTGGTGAAGGAAGAAGCTGGTGAAGGATGCAAAGAATCAGTGTTTTCAATGAACTCCGCTGTTCACTGGCCTCTATCAGATGCTTTAGATGCCTCTAAAAACCGTCAATCTGGTGAAATTCAGAATGCAGTTCCGATTTCCATGAGTAATCCATTCTTCAGAACCCAATTTGGTGGTGCTCCATTGAAACAACATGGTGTTAGTGTTATTCCACCTAATGGTTCATTTCTTGCTGGAACTACTGAACCATGGTATAGTTCCAAGACTTCTTGTGCTCCTGCTCAATTAACCATCTTTTATGGTGGTATGGTGAATGTGTATGATGATATTTCCCCTGAGAAGGCTCAAGCTATCATGTTTTTGGCGGGAAATGGGGCGTCTGTGACTACCCCTCAAGCTAGGGTTCCAACTCAAGTGGCCACTCCAAGTCCAATCAATGTACAACCGTGTTCTGCAATCTCAAGCCCGATGTCCGTGTCTTCACACCCAGTTGGTCAATCGAGTGGTGGGCCCACTAATAAAGATGAAGTTGGTAAACCAGTCGGAGGTTCGGTTCCTCCTGCTAGCAAAGTGGATACTCCACGAGTTATCAATTCACTTGAACAAGTGATGCAATCAGCTGTTCCTCAAGCACGCAAAGCATCCTTGGCTCGGTTTCTTGAGAAGCGCAAGGAAAGGGTGATGGCTTCGTCTCCTTATAGCATCAACAAGAGCTCATCCGACTATATTACCAATCCAGGACCTAATGCCATAGTAGCAAC | |||||||||
gi|22239393|gb|BQ853928.1|BQ853928 QGB21N24.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB21N24, mRNA sequence AGCCAAGGATGACTTGCCTGT EST sequence (targeted fragment marked with yellow): GATGATGAACCGGTTTTTGTGAATGCAAAGCAATATCATGGAATAATAAGACGTAGAAGATCACGTGCTAAGGCAGAAATGGCAAATAAAGTTTTGAAAAATCGTAAGCCATATATGCACCACTCACGTCATCTCCATGCAATGCGTCGACCAAGAGGAAACGGGGGTCGTTTCTTGAACACCAAAAAGGAAAACAACTGCAAAGATGAAAATACCGATCAAGAAAAAGACAAAAACCTTTTAAAGTCTCCTAATTATACAATTTTCATGTCCAATCATCACAACTCCACTTCTCATCGTGAACCAAATAACATGTTCTCAACGGGAGACGTTAAAAGTCTTCCGATTGGAAACCTTTCGGTGGTCTCTTTTTCAGAAATGATGTCCGGGAACACAGCTCCCAGACATAGTTTTGGCATGCATGGCAAATGGGTTGCAGCGACTGGTGGTGGTGATGGTCGCTGCAATTTTACAGTCTAATGTCAGAGATGAGGTCCTGATGTGTTGTATGTATATCAGCATATCGGGACCTCATATCTTTACAACCAGATGAAATATTTGAAATATTTATCTGGTTGTCTTTGGCAACTCATCCTTGGCTTATTGTGTTGAGGTTGTCTCTAACCTTTCTCACGTTGCATTTCATAGTGTGCAATGTTTTGAGAGTTGTTATGAGATGTTCATAGCCTTAATGCATGTTAAAAAAATGAACAAACACT | |||||||||
gi|83993268|gb|DW139377.1|DW139377 CLSY7067.b1_F15.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSY7067, mRNA sequence AGCCAAGGATGACTTGCCTGT EST sequence (targeted fragment marked with yellow): GCGGGGAATATTTTTCACGTTGAAAGATGGAAAGGGATTTCATGGGTTTGAATTCGAAGGATTCAGTGGTTGTGGTGAAGGAAGAAGCTGGTGAAGGATGCAAAGAATCANGTGTTTTCAATGAACTCCGCTGTTCACTGGCCTCTATCAGATGCTTTAGATGCCTCTAAAAACCGTCAATCTGGTGAAATTCAGAAAAGCTTTGGTGTAAGTAGGCAAGGTGGCACTCATTTTTCAATGGCTGCTTATCCCATGCAACAGAATGCAGTTCCGATTTCCATGAGTAATCCATTCTTCAGAACCCAATTTGGTGGTGCTCCATTGAAACAACATGGTGTTAGTGTTATTCCACCTAATGGTTCATTTCTTGCTGGAACTACTGAACCATGGTATAGTTCCAAGACTTCTTGTGCTCCTGCTCAATTAACCATCTTTTATGGTGGTATGGTGAATGTGTATGATGATATTTCCCCTGAGAAGGCTCAAGCTATCATGTTTTTGGCGGGAAATGGGGCGTCTGTGACTACCCCTCAAGCTAGGGTTCCAACTCAAGTGGCCACTCCAAGTCCAATCAATGTACAACCGTGTTCTGCAATCTCAAGCCCGATGTCTGTGTCTTCACACCCAGTTGGTCAATCGAGTGGTGCGCCCACTAATAAAGATGAAGTTGGTAAACCAGTCGGAGGTTCGGTTCCTCCTGCTAGCAAAGTGGATACTCCACGAGTTATCAATTCACTTGAACAAGTGATGCAATCAGCTGTTCCTCAAGCACGCAAAGCATCCTTGGCTCGGTTT | |||||||||
gi|22236431|gb|BQ850962.1|BQ850962 QGB14A16.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB14A16, mRNA sequence AGCCAAGGATGACTTGCCTGT EST sequence (targeted fragment marked with yellow): GGCCGTACTGCGGGTCTCACCCTGAACGCCTCATTCTTAGGGAACTTGAAGTCCATGATCTGGGGGGAGTCAGGCGGGCAACAGTCGCCGCCGGTGGGAGTGCTCTCCCCAGGTCTAAACCCTGAAAGAGGGTTAGTCCCACATTTGGAAATATCCGGGGCGGATATTGGCGCAGCTCCGACAGACGGAACAGACGTCAAGTTCACAGCTCCGGCAAGACCACCGAGACCGAGAAGAACATTCCGGCGATCAAGGTTGTTCAAGGAGTTCTCAGAAGAACCAGCATTGCAAGAGATTTTGTGTTTTAGTGGCTTATTAAGGGCACATTTCTTCGAGAACAACGGCCAAGAAGAGATGACAGGGGAAGTGGTGGTGAAAGAAGAAGAGTAGGTTTTAGTGGTGGCTCCGGCAGCTGTAACTGTTGGTGTGGGAAGAGAAGCCATGAGCTTTTGGTGGTGTCCAATGGTGAGAGCTTCTTCCACCATCAAGAACTTAGGTTCCCGGTATACCATCCTCAAGTTGGGCCCATACAGAGTGTTGGGCCCAACACCGATGGTATACTAGGTGGAACCCACCACATGTTTCGTTGATGAACAGCGAAATAGACTCGGTGAACCAACAACCTGAAATCTGGGGGGGTGTTGGTCCCCAGGGAAGTCATCCTTGGCTC | |||||||||
gi|83988857|gb|DW134966.1|DW134966 CLSY2473.b1_B19.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSY2473, mRNA sequence AGCCAAGGATGACTTGCCTGT EST sequence (targeted fragment marked with yellow): CGCGGGGGTGCCTCTCAAGTTTCAACCATTTTTCTCGCTTTATCTTGGGTTTTAAATATTTTTCAAGTTGAAAGATGGAAAGGGATTTCATGGGTTTGAATTCGAAGGATTCAGTGGTTGTGGTGAAGGAAGAAGCTGGTGAAGGATGCAAAGAATCAGTGTTTTCAATGAACTCCGCTGTTCACTGGCCTCTATCAGATGCTTTAGATGCCTCTAAAGACCGTCAATCTGGTGAAATTCAGAAAAGCTTTGGTGTAAGTAGGCAAGGTGGCACTCATTTTTCAATGGCTGCTTATCCCATGCAACAGAATGCAGTTCCGATTTCCATGAGTAATCCATTCTTCAGAACCCAATTTGGTGGTGCTCCATTGAAACAACATGGTGTTAGTGTTATTCCACCTAATGGTTCATTTCTTGCTGGAACTACTGAACCATGGTATAGTTCCAAGACTTCTTGTGCTCCTGCTCAATTAACCATCTTTTATGGTGGTATGGTGAATGTGTATGATGATATTTCCCCTGAGAAGGCTCAAGCTATCATGTTTTTGGCGGGAAATGGGGCGTCTGTGACTACCCCTCAAGCTAGGGTTCCAACTCAAGTGGCCACTCCAAGTCCAATCAATGTACAACCGTGTTCTGCAATCTCAAGCCCGATGTCTGTGTCTTCACACCCAGTTGGTCAATCGAGTGGTGNGCCCACTAATAAAGATGAAGTTGGTAAACCAGTCGGAGGTTCGGTTCCTCCTGCTAGCANAGTGGATACTCCACGAGTTATCAATTCACTTGAAACAGTGATGNCATCAGCTGTTCCTCAAGCACGCAAAGCATCCTTGGCTCGGTTTCTTGAGAAGCGCAAGGAAAAGGTGATGGCTTCGTCTCCTTATAGCATCAACAAGAGCTCATCCGACTATATTACAA | |||||||||
gi|90519995|gb|DY981853.1|DY981853 CLSS3875.b1_E09.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSS3875, mRNA sequence AGCCAAGGATGACTTGCCTGT EST sequence (targeted fragment marked with yellow): GATTTCTCTCCGATTTCTTTGCCAATTCTAGGGTTCGTTTTTCCTTTTCAACAACACCCTCTGCCGGTAAATCTTACTGGCAAATTGCATCAACTCCATGTCCACTACAGCCATGAGAGCAAATTCACATGATTCATCTTCACAAGAACAATCATTAGACAGGGACACTCAGTCTGATGAAGTTTTAAGTGAAGAAGAAGATGATGTCAGCAAAGAAACACATAACAATGTGTCATATTTTCCTTCAGATACATGTGCACAAGAGCACCAAAATTTTCAGCATGACATACTTCCAAGAAATGAAGAAACCCTTTCACAGCCACCACAACTTGAACTTGTCAATCAATCAGTTGCTCCTTATTATGATCCGTATTATGGTGGGATGATGGCAGCAGCTTATGGTCAACATTTTGTTCATCCTCAGTTTGTTGATGTGCAACAAGTGAGGATGCCATTGCCACTTGAAATGGCACAAGAGCCTGTTTATGTGAATGCTAAACAATATCATGCAATTTTGAGGCGAAGACAATCACGTGCTAAAGCTGAGCTTGAAAAGAAACTTATAAAAGATAGAAAGCCTTATCTTCATGAATCCCGGCATCAACACGCGATGAGAAGAGTGAGAAGTTCCGGTGGTCGATTTGCAAAGAAAACCGAAACCGATGCTTTAAAAAATACAAGTGATGACGTGGCAACAGGTATGAAGCGCATGCACTCAGAGCCAGCTGTAAGTTTCGGGACCCACACCAACCAAGAAACAAGGGGTGGCGGAATGGTAAATTCATGNCATGGTGGGGCCCTCAGGTATGAAAACCAAGATGGGTTTCAGGAGGGAGGTTCTTTANGGGCAGCATGGTCAACAATACCTTCTAGTCAAATTCACAGAGGGCAGTTGCCATGAAATGAAATGATATGATATGTCGTATGATTTGGCTGGCAAATCATTCTTGGCTGTTTT | |||||||||