| mature miRNA: AGCCAAGGATGATTTGCCGAC species: Picea sitchensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|149980010|gb|ES880035.1|ES880035 WS02942.CR_J02 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS02942_J02 3', mRNA sequence AGCCAAGGATGATTTGCCGAC EST sequence (targeted fragment marked with yellow): AAGAGCTCTTTTTTTTTTTTTTTTATGCAAAAATATCTATTCAATCATATAAAATTTGCAGTTTCTCGCTGTACAAGCACACAATGCTAAAACTTGTAATATAAGAATTGAAGCCCTTGAGTGAATTGAGAGTGTCTACTCAAATATCGGAAGATAATTCCCATCATTATAAATTCATGCAAACACAGGGGTATATGAACCAACGGAACGCAACAACTCCTAAAGAGAACTGCTGGAGGAAACCCTCTCAACGGTATTGAGAAGCCAGCAATATGAAGAGCTACTTCTGCATAAATTATTTCGTTACCAAAACGCAGATATATTCGATGATAACGATCTGATCCGTGAATAACACACCATCCTCGCGCAGGGCCTGGCATGAAAAAGGAGATAGCGATGCTTTGCCAAGAATAACCTACCCGCAGGACTGAAATGCGCATGTGGAACAATGATTCATAACAGTATGCGGGCAAGTCATTCTTGGCTGAGTATGGCTATCTGCCTCGACATGCGAGAGCCTACACGAATTTCTTCATAACTGAAAAAAATTACATGAATCTCAGAGTAAGAGAATAAGATGTGTAATTGGAGCCG | |||||||||
gi|166895756|gb|FD730288.1|FD730288 WS03734.C21_D14 SS-B-N-22 Picea sitchensis cDNA clone WS03734_D14 3', mRNA sequence AGCCAAGGATGATTTGCCGAC EST sequence (targeted fragment marked with yellow): GCACGAGGGCATTACACTTATCATCAAAGGCGAGGATTTCATTCATCTGCATTTCATCCTCTTTCAGTCAGCAATGCAGAAAGTGGCCAAGTTGGAGGCATGGTTTCCAGTGGAGGCCACCATACAGCAGTAGCAACCTAATGACATCATTTCAGATGGGGGCATCAACATGTATGTCCTGTTCAATCTCCAAGTTTATGGACAAACAAAAAAGTAAGTTTATTGACTTTTGTAAAAAATATCTATGCATATAGTTTATGATTTTGTTTTATAAGATGTTCACCAAAGAAAGGTTGGTCTGAAGCATGCAATATCCTGGCATGCAACTTCCTTGACAAGATATTTTTCAAGGAAAGGGCAGGGTTCGGCATACATCTGAAATTAAATCTATTTATCTCAGAGGCTGATACTTTTGCCAAACCTTAGATATTGAACTTGGTAGATTTGTGTAGGACTTGGGACACTATATCAACTAGGCTGTAGATTTGTGTGGTGTGATGCAGGGCAGAACTCTGTCAGCCTGCATAAATGGACAGAGGCAAATCATTCTTGGCTAATGTATTTGGTACTTTT | |||||||||
gi|218447007|gb|GH285048.1|GH285048 WS0454.CR_K20 SS-BD-N-30 Picea sitchensis cDNA clone WS0454_K20 3', mRNA sequence AGCCAAGGATGATTTGCCGAC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTGTAAACAAGATCAGATTTCATACATAGTAAGATTCAATAATAATAAATATCGGTGGATAGGGAGCAGGGCGTATGATGATATTTCTTCTGCCAAGCAACTTATTCGTCTATATATATTTCATCTAAGGTCTAGCATGAGAAGCACAGCAAGATATGTAGCCAAGGACAAATCGCCAACTTCCTTCCATATCATGACGTCATGTACAATATGCATTTGTCCAGACAGATTATGAGTGGATGTCGGCAAATCATCCTTGGCTCCATCACCTACTGTGGCCTTTCATGCAAGATCCCACATGATTTCCTTGCTTCTGCTGGGGCTGGTCGCTCATTGTTTCTCCCATAGAAGGGAGACTCATAAACATTGGAAAGCAGAGACGAAGAAAGCGAGTGTTATCCACAGAGAATGAAACATCGTTATACCCCCC | |||||||||